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Search of human proteins with 7706425
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
sapiens]
(96 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] 186 3e-48
gi|7657313 Lsm1 protein [Homo sapiens] 58 2e-09
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 43 5e-05
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 43 5e-05
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 42 8e-05
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 42 8e-05
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 42 8e-05
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 42 8e-05
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 42 8e-05
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens] 42 1e-04
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s... 42 1e-04
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom... 38 0.002
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p... 38 0.002
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p... 38 0.002
gi|40254988 LSM domain containing 1 [Homo sapiens] 37 0.004
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s... 35 0.017
gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote... 35 0.017
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform... 33 0.064
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 32 0.084
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 32 0.084
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 32 0.084
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens] 32 0.11
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens] 32 0.11
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ... 32 0.11
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo... 30 0.54
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo... 30 0.54
gi|171543895 ataxin 2 [Homo sapiens] 28 1.2
gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo ... 27 4.6
gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo sa... 27 4.6
gi|169203121 PREDICTED: similar to small nuclear ribonucleoprote... 27 4.6
>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
sapiens]
Length = 96
Score = 186 bits (472), Expect = 3e-48
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
Sbjct: 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>gi|7657313 Lsm1 protein [Homo sapiens]
Length = 133
Score = 57.8 bits (138), Expect = 2e-09
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYI 61
T++L I++ V+ DGR ++G L+ DQ NL+L ++ ER+ + + G+++
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIFV 65
Query: 62 VRGDNVAVIGEIDEETDSALDLGNIRAEPL 91
VRG+NV ++GEID E +S L + E +
Sbjct: 66 VRGENVVLLGEIDLEKESDTPLQQVSIEEI 95
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 43.1 bits (100), Expect = 5e-05
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQV 55
+S + +I+ + I DGR+ +GT K FD+ +NLIL + E + ++ E+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 56 VLGLYIVRGDNV 67
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
isoform B [Homo sapiens]
Length = 231
Score = 43.1 bits (100), Expect = 5e-05
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQV 55
+S + +I+ + I DGR+ +GT K FD+ +NLIL + E + ++ E+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 56 VLGLYIVRGDNV 67
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 42.4 bits (98), Expect = 8e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQV 55
+S + +I+ + I DGR+ +GT K FD+ +NLIL + E + + E+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 56 VLGLYIVRGDNV 67
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 42.4 bits (98), Expect = 8e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQV 55
+S + +I+ + I DGR+ +GT K FD+ +NLIL + E + + E+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 56 VLGLYIVRGDNV 67
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 42.4 bits (98), Expect = 8e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQV 55
+S + +I+ + I DGR+ +GT K FD+ +NLIL + E + + E+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 56 VLGLYIVRGDNV 67
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 42.4 bits (98), Expect = 8e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQV 55
+S + +I+ + I DGR+ +GT K FD+ +NLIL + E + + E+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 56 VLGLYIVRGDNV 67
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 42.4 bits (98), Expect = 8e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQV 55
+S + +I+ + I DGR+ +GT K FD+ +NLIL + E + + E+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 56 VLGLYIVRGDNV 67
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
sapiens]
Length = 103
Score = 42.0 bits (97), Expect = 1e-04
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERV------FSSSQGVEQVVLG 58
L YI++T+ V GR G LKGFD +NL+LD + E + + ++ Q LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LG 72
Query: 59 LYIVRGDNVAVI 70
L + RG +V +I
Sbjct: 73 LVVCRGTSVVLI 84
>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
sapiens]
Length = 76
Score = 41.6 bits (96), Expect = 1e-04
Identities = 18/70 (25%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
L+ ++++ +++ + GR + G L+GFD +NL++DE E S Q +G+ ++RG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN----NIGMVVIRG 64
Query: 65 DNVAVIGEID 74
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
sapiens]
Length = 74
Score = 37.7 bits (86), Expect = 0.002
Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
L+ + ++ ++ + GR + G L+GFD +NL++DE E S +Q +G+ +RG
Sbjct: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQKNIGMVEIRG 64
Query: 65 DNVAVIGEID 74
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 37.7 bits (86), Expect = 0.002
Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
L+ + ++ ++ + GR + G L+GFD +NL++DE E S +Q +G+ +RG
Sbjct: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQKNIGMVEIRG 64
Query: 65 DNVAVIGEID 74
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 37.7 bits (86), Expect = 0.002
Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
L+ + ++ ++ + GR + G L+GFD +NL++DE E S +Q +G+ +RG
Sbjct: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQKNIGMVEIRG 64
Query: 65 DNVAVIGEID 74
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>gi|40254988 LSM domain containing 1 [Homo sapiens]
Length = 173
Score = 36.6 bits (83), Expect = 0.004
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE--RVFSSSQGVEQVVLGLYIV 62
LE +N+T+ + +DGR +VG D+ N+IL + E + S E VLGL +V
Sbjct: 93 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMV 152
Query: 63 RGDNVAVIGEIDEET 77
G ++ I E+ E+
Sbjct: 153 PGHHIVSI-EVQRES 166
>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
sapiens]
Length = 92
Score = 34.7 bits (78), Expect = 0.017
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEI 73
I G + GFD+ +NL+LD++ E + S ++ +Q LG +++GDN+ ++ +
Sbjct: 43 IEGCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>gi|169194552 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 62
Score = 34.7 bits (78), Expect = 0.017
Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 9 INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVA 68
+++ +++ + GR + G L+G D +NL++DE E S Q G+ ++RG+++
Sbjct: 1 MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQN----NTGMVVIRGNSIL 56
Query: 69 VIGEID 74
++ ++
Sbjct: 57 MLEALE 62
>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform
a [Homo sapiens]
Length = 91
Score = 32.7 bits (73), Expect = 0.064
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
++ I + ++ + IVGTL GFD +N++L++ E + +G L ++ G
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEI-TPEGRRITKLDQILLNG 76
Query: 65 DNVAVI 70
+N+ ++
Sbjct: 77 NNITML 82
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 32.3 bits (72), Expect = 0.084
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVL------G 58
L+ +I+ + I +G + G K FD+ +NLIL + E + V+Q L G
Sbjct: 154 LQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWG 213
Query: 59 LYIVRGDNV 67
L ++ G+N+
Sbjct: 214 LVLLHGENL 222
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 32.3 bits (72), Expect = 0.084
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVL------G 58
L+ +I+ + I +G + G K FD+ +NLIL + E + V+Q L G
Sbjct: 154 LQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWG 213
Query: 59 LYIVRGDNV 67
L ++ G+N+
Sbjct: 214 LVLLHGENL 222
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 32.3 bits (72), Expect = 0.084
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVL------G 58
L+ +I+ + I +G + G K FD+ +NLIL + E + V+Q L G
Sbjct: 154 LQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWG 213
Query: 59 LYIVRGDNV 67
L ++ G+N+
Sbjct: 214 LVLLHGENL 222
>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEI 73
I G + GFD+ +NL+LD++ E + S ++ +Q LG +++G N+ ++ +
Sbjct: 43 IEGCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGGNITLLQSV 90
>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEI 73
I G + GFD+ +NL+LD++ E + S ++ +Q LG +++G N+ ++ +
Sbjct: 43 IEGCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGGNITLLQSV 90
>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
sapiens]
Length = 92
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEI 73
I G + GFD+ +NL+LD++ E + S ++ +Q LG +++G N+ ++ +
Sbjct: 43 IEGCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGGNITLLQSV 90
>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
IVGTL GFD +N++L++ E + +G L ++ G+N+ ++
Sbjct: 7 IVGTLLGFDDFVNMVLEDVTEFEI-TPEGRRITKLDQILLNGNNITML 53
>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
IVGTL GFD +N++L++ E + +G L ++ G+N+ ++
Sbjct: 7 IVGTLLGFDDFVNMVLEDVTEFEI-TPEGRRITKLDQILLNGNNITML 53
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGV--EQVVLG 58
M L + + V +G + G K + +L+LD +HE+ SS G E+++
Sbjct: 268 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMES 327
Query: 59 LYIVRGDNVAV--------IGEIDEETDSAL 81
+ D V V + D TDSA+
Sbjct: 328 ILFKCSDFVVVQFKDMDSSYAKRDAFTDSAI 358
>gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo
sapiens]
Length = 108
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE---RVFSSSQGVEQV-- 55
+T +++N N V + + + ++G +K FD+ N++L+ E V S +G ++
Sbjct: 22 LTQSVKN--NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKP 79
Query: 56 -----VLGLYIVRGDNVAVI 70
+ +RGD+V V+
Sbjct: 80 VNKDRYISKMFLRGDSVIVV 99
>gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo
sapiens]
Length = 118
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE---RVFSSSQGVEQV-- 55
+T +++N N V + + + ++G +K FD+ N++L+ E V S +G ++
Sbjct: 32 LTQSVKN--NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKP 89
Query: 56 -----VLGLYIVRGDNVAVI 70
+ +RGD+V V+
Sbjct: 90 VNKDRYISKMFLRGDSVIVV 109
>gi|169203121 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 GRMIVGTLKGFDQTINLILDESHERVFSSSQ 50
GR + G L GF +NL++DE + S Q
Sbjct: 23 GRCVQGILWGFSHFMNLMIDECVKMAISGQQ 53
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,754,150
Number of Sequences: 37866
Number of extensions: 90328
Number of successful extensions: 176
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 34
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.