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Search of human proteins with 7705887
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705887 hypothetical protein LOC51161 [Homo sapiens]
(162 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705887 hypothetical protein LOC51161 [Homo sapiens] 319 6e-88
gi|10835203 advanced glycosylation end product-specific receptor... 32 0.24
gi|61966741 TMF regulated nuclear protein [Homo sapiens] 31 0.53
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 30 0.91
gi|169218146 PREDICTED: similar to neuron navigator 3, partial [... 30 0.91
gi|120953251 neuron navigator 3 [Homo sapiens] 30 0.91
gi|4758250 ephrin B2 [Homo sapiens] 30 1.2
gi|157419150 protein tyrosine phosphatase, receptor type, M isof... 30 1.2
gi|157419152 protein tyrosine phosphatase, receptor type, M isof... 30 1.2
gi|46195719 olfactomedin-like 2B [Homo sapiens] 30 1.2
gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo ... 30 1.2
gi|167736355 mucin 4 isoform a [Homo sapiens] 29 1.6
gi|16905507 progressive ankylosis protein [Homo sapiens] 29 1.6
gi|14589893 cadherin 4, type 1 preproprotein [Homo sapiens] 29 2.0
gi|116284392 mucin 2 precursor [Homo sapiens] 28 2.6
gi|239742763 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|239740974 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|239508696 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|225903367 glycine receptor, alpha 1 isoform 1 precursor [Homo... 28 2.6
gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens] 28 2.6
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 28 2.6
gi|194733742 Wolf-Hirschhorn syndrome candidate 2 protein [Homo ... 28 2.6
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 28 2.6
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 28 3.5
gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens] 28 3.5
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 28 4.5
gi|194328806 nuclear receptor subfamily 1, group H, member 3 iso... 28 4.5
gi|194294517 nuclear receptor subfamily 1, group H, member 3 iso... 28 4.5
gi|4507467 transforming growth factor, beta-induced, 68kDa precu... 28 4.5
gi|33946327 nucleoporin 214kDa [Homo sapiens] 28 4.5
>gi|7705887 hypothetical protein LOC51161 [Homo sapiens]
Length = 162
Score = 319 bits (818), Expect = 6e-88
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MNSRTASARGWFSSRPPTSESDLEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVG 60
MNSRTASARGWFSSRPPTSESDLEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVG
Sbjct: 1 MNSRTASARGWFSSRPPTSESDLEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVG 60
Query: 61 TMLLSFGIITVIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHGRD 120
TMLLSFGIITVIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHGRD
Sbjct: 61 TMLLSFGIITVIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHGRD 120
Query: 121 AASVQAATSVQAMQGKTTLPSQGPLQRPSRLVFTDVANAIHV 162
AASVQAATSVQAMQGKTTLPSQGPLQRPSRLVFTDVANAIHV
Sbjct: 121 AASVQAATSVQAMQGKTTLPSQGPLQRPSRLVFTDVANAIHV 162
>gi|10835203 advanced glycosylation end product-specific receptor
isoform 1 precursor [Homo sapiens]
Length = 404
Score = 32.0 bits (71), Expect = 0.24
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 21/108 (19%)
Query: 5 TASARGWFSSRPPTSESDLEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVGTMLL 64
T S+ G SR S S +EP +GP + + G +G+GT+ L
Sbjct: 304 THSSHGPQESRA-VSISIIEPGEEGPTAGSV-------------------GGSGLGTLAL 343
Query: 65 SFGIITVIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELEQ 112
+ GI+ +G A L+ I ++R + + P N + EE+ EL Q
Sbjct: 344 ALGILGGLGTAALLIGVILWQRRQRRGEERKAP-ENQEEEEERAELNQ 390
>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
Length = 227
Score = 30.8 bits (68), Expect = 0.53
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 10 GWFSSRPPTSESDLEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAG 58
G R P D P++ P T TL+P T +PDAAG +AG
Sbjct: 16 GTAEQRSPPPPRDPMPSSQ-PPPPTPTLTPTPTPGQSPPLPDAAGASAG 63
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 30.0 bits (66), Expect = 0.91
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 1 MNSRTASARGWFSSRPPTSESDLEPATDGP----ASETTTLSPEATTFNDTR 48
+ S+T +A +SR PTSE P T+ P + T TL+P+A T+
Sbjct: 660 LTSQTTAALTTEASRRPTSEFTRRPTTEAPQRWTSHTTATLTPQAPRERTTK 711
>gi|169218146 PREDICTED: similar to neuron navigator 3, partial
[Homo sapiens]
Length = 733
Score = 30.0 bits (66), Expect = 0.91
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 27/162 (16%)
Query: 1 MNSRTASARGWF--------SSRPPTSESDLEPATDG--PASETTTLSPEATTFNDTRIP 50
+NSR + R F S++PP+S SD+E TD PAS ++P
Sbjct: 72 VNSRGSELRSSFKQAFGKKKSTKPPSSHSDIEELTDSSLPAS--------------PKLP 117
Query: 51 DAAG--GTAGVGTMLLSFGIITVIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQD 108
AG G+A + + I ++L ++ + R ++L+ + + D
Sbjct: 118 HNAGDCGSASMKPSQSASAICECTEAEAEIILQLKSELREKELKLTDIRLEALSSAHHLD 177
Query: 109 ELEQELLEHGRDAASVQAATS-VQAMQGKTTLPSQGPLQRPS 149
++ + + + ++A ++A G T P++ P + S
Sbjct: 178 QIREAMNRMQNEIEILKAENDRLKAETGNTAKPTRPPSESSS 219
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 30.0 bits (66), Expect = 0.91
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 27/162 (16%)
Query: 1 MNSRTASARGWF--------SSRPPTSESDLEPATDG--PASETTTLSPEATTFNDTRIP 50
+NSR + R F S++PP+S SD+E TD PAS ++P
Sbjct: 1702 VNSRGSELRSSFKQAFGKKKSTKPPSSHSDIEELTDSSLPAS--------------PKLP 1747
Query: 51 DAAG--GTAGVGTMLLSFGIITVIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQD 108
AG G+A + + I ++L ++ + R ++L+ + + D
Sbjct: 1748 HNAGDCGSASMKPSQSASAICECTEAEAEIILQLKSELREKELKLTDIRLEALSSAHHLD 1807
Query: 109 ELEQELLEHGRDAASVQAATS-VQAMQGKTTLPSQGPLQRPS 149
++ + + + ++A ++A G T P++ P + S
Sbjct: 1808 QIREAMNRMQNEIEILKAENDRLKAETGNTAKPTRPPSESSS 1849
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 6 ASARGWFSSRPPTSESDLEPATDGPASETTT-LSPEATTFNDTRIPDAAGGT-------- 56
AS+ G ++ PT +LE T+G +S T+ + P + D +G
Sbjct: 168 ASSAGSTRNKDPTRRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVAL 227
Query: 57 -AGVGTMLLSFGIITVIGLAVALVLYIRKKKR 87
AG+ + + F I+ +I L V L+ Y R+ ++
Sbjct: 228 FAGIASGCIIF-IVIIITLVVLLLKYRRRHRK 258
>gi|157419150 protein tyrosine phosphatase, receptor type, M isoform
2 precursor [Homo sapiens]
Length = 1452
Score = 29.6 bits (65), Expect = 1.2
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 23 LEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVGTMLLSFGIITVIGLAVALVLYI 82
++ AT G A+ PE T + +I AGV +L F +I L V LV+
Sbjct: 717 VQVATKGAATPKPVPEPEKQTDHTVKI-------AGVIAGILLF---VIIFLGVVLVM-- 764
Query: 83 RKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHGRDAASVQAATSVQAMQGKTTLPSQ 142
KK++L K R + M + T + +++ E G + + + G+ ++ S
Sbjct: 765 -KKRKLAKKRKETMSSTRQEMTVMVNSMDKSYAEQGTNCDEAFSFMDTHNLNGR-SVSSP 822
Query: 143 GPLQRPSRLVFTDVANAIH 161
+ + T V N+ +
Sbjct: 823 SSFTMKTNTLSTSVPNSYY 841
>gi|157419152 protein tyrosine phosphatase, receptor type, M isoform
1 precursor [Homo sapiens]
Length = 1465
Score = 29.6 bits (65), Expect = 1.2
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 23 LEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVGTMLLSFGIITVIGLAVALVLYI 82
++ AT G A+ PE T + +I AGV +L F +I L V LV+
Sbjct: 717 VQVATKGAATPKPVPEPEKQTDHTVKI-------AGVIAGILLF---VIIFLGVVLVM-- 764
Query: 83 RKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHGRDAASVQAATSVQAMQGKTTLPSQ 142
KK++L K R + M + T + +++ E G + + + G+ ++ S
Sbjct: 765 -KKRKLAKKRKETMSSTRQEMTVMVNSMDKSYAEQGTNCDEAFSFMDTHNLNGR-SVSSP 822
Query: 143 GPLQRPSRLVFTDVANAIH 161
+ + T V N+ +
Sbjct: 823 SSFTMKTNTLSTSVPNSYY 841
>gi|46195719 olfactomedin-like 2B [Homo sapiens]
Length = 750
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 1 MNSRTASARGWFSSRPPTSESD---LEPATDGPASETTTLSPEAT 42
+N+RTA W S+ P S SD A+ GP +TT++SP+ T
Sbjct: 364 LNARTAP---WSSALPQPSTSDPSIANHASVGPTLQTTSVSPDPT 405
>gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo
sapiens]
Length = 122
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 38 SPEATTFNDTRIPDAAGGTAGVGTMLLSFGIITVIGLAVALVLYIRKKKR 87
S EA + N + P+ A A G++ L+ IIT + L+V +L +++KKR
Sbjct: 10 SSEAPSGN-LKQPETAAALASSGSVDLTNSIITAVFLSVVAILAMQEKKR 58
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 29.3 bits (64), Expect = 1.6
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 3 SRTASARGWFSSRPPTSESDLEPATDGPASETTTLSPEAT--TFNDTRIPDA 52
S + A FS+ PPT S P +ET TLSP + TF I +A
Sbjct: 923 SLASQATDTFSTVPPTPPSITSTGLTSPQTETHTLSPSGSGKTFTTALISNA 974
>gi|16905507 progressive ankylosis protein [Homo sapiens]
Length = 492
Score = 29.3 bits (64), Expect = 1.6
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 54 GGTAGVGTMLLSF-GIITVIGLAVALVLYIRKKKRLEK---LRHQLMPMYNFDPTEEQDE 109
G T GVG++L F G T++ +A A +Y ++KK++E + M + PTEE +
Sbjct: 425 GATLGVGSLLAGFVGESTMVAIA-ACYVYRKQKKKMENESATEGEDSAMTDMPPTEEVTD 483
Query: 110 L 110
+
Sbjct: 484 I 484
>gi|14589893 cadherin 4, type 1 preproprotein [Homo sapiens]
Length = 916
Score = 28.9 bits (63), Expect = 2.0
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 30 PASETTTLSPEATTFNDTRIPDAAGGTA--GVGTMLLSFGIITVIGLAVALVLYIRKKKR 87
P S T+ + + +D G A G+GT + +I ++ L ++L++ KR
Sbjct: 699 PLSNTSIIKVKVCPCDDNGDCTTIGAVAAAGLGTGAIVAILICILILLTMVLLFVMWMKR 758
Query: 88 LEKLRH--QLMPMYNFDPTEEQDELEQELLEHGRDAASVQ----AATSVQAMQGKTTLPS 141
EK RH QL+ DP +D++ +L++ + + + +Q + +PS
Sbjct: 759 REKERHTKQLL----IDP---EDDVRDNILKYDEEGGGEEDQDYDLSQLQQPEAMGHVPS 811
Query: 142 QGP 144
+ P
Sbjct: 812 KAP 814
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 28.5 bits (62), Expect = 2.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 14 SRPPTSESDLEPATDGPASETTTLSPEATT 43
S PPTS + L P T TTT +P TT
Sbjct: 1407 SPPPTSTTTLPPTTTPSPPTTTTTTPPPTT 1436
Score = 27.7 bits (60), Expect = 4.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 16 PPTSESDLEPATDGPASETTTLSPEATT 43
PP S + P T P+ TTT SP TT
Sbjct: 1456 PPISTTTTPPPTTTPSPPTTTPSPPTTT 1483
Score = 27.7 bits (60), Expect = 4.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 16 PPTSESDLEPATDGPASETTTLSPEATT 43
PPTS + L P T TTT +P TT
Sbjct: 1549 PPTSTTTLPPTTTPSPPPTTTTTPPPTT 1576
Score = 27.7 bits (60), Expect = 4.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 16 PPTSESDLEPATDGPASETTTLSPEATT 43
PPTS + L P T TTT +P TT
Sbjct: 1628 PPTSTTTLPPTTTPSPPPTTTTTPPPTT 1655
>gi|239742763 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 28.5 bits (62), Expect = 2.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 9 RGWFSSRPPTSESDLEPATDGPASE 33
+GW S RPP ++ L+ + GPAS+
Sbjct: 254 QGWASRRPPQAQVVLKSGSPGPASQ 278
>gi|239740974 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 28.5 bits (62), Expect = 2.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 9 RGWFSSRPPTSESDLEPATDGPASE 33
+GW S RPP ++ L+ + GPAS+
Sbjct: 254 QGWASRRPPQAQVVLKSGSPGPASQ 278
>gi|239508696 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 28.5 bits (62), Expect = 2.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 9 RGWFSSRPPTSESDLEPATDGPASE 33
+GW S RPP ++ L+ + GPAS+
Sbjct: 254 QGWASRRPPQAQVVLKSGSPGPASQ 278
>gi|225903367 glycine receptor, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 457
Score = 28.5 bits (62), Expect = 2.6
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 59 VGTMLLSFGIITVIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHG 118
V + LL + + + +L R+K+R H PM N +E E +G
Sbjct: 322 VFSALLEYAAVNFVSRQHKELLRFRRKRR-----HHKSPMLNLFQEDEAGEGRFNFSAYG 376
Query: 119 RDAASVQAATSVQ---AMQGKTTLPSQGPLQRPSRL 151
A +QA + A TT P P + P +
Sbjct: 377 MGPACLQAKDGISVKGANNSNTTNPPPAPSKSPEEM 412
>gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens]
Length = 452
Score = 28.5 bits (62), Expect = 2.6
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 2 NSRTASARGWFSSRPPTSESDLEPAT-----DGPASETTTLSPEATTFNDTRIPDAAGGT 56
+S AS+ SS PPTS + +PAT D +S T ++P T T + D G +
Sbjct: 374 SSSAASSGELLSSLPPTSNAPSDPATTTAKADAASSLTVDVTP-PTAKAPTTVEDRVGDS 432
Query: 57 AGVGTMLLSFGI 68
V +S +
Sbjct: 433 TPVSEKPVSAAV 444
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 28.5 bits (62), Expect = 2.6
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 4 RTASARGWFSSRPPTSESDLEPATDGPASETTTLSPEATTF 44
R A+ G + PPT AT GP ++ T++P++TTF
Sbjct: 482 REAARAGPEGTSPPTPTPST--ATGGPPEDSPTVAPKSTTF 520
>gi|194733742 Wolf-Hirschhorn syndrome candidate 2 protein [Homo
sapiens]
Length = 539
Score = 28.5 bits (62), Expect = 2.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 12 FSSRPPTSESDLEPATDGPASETTTLSP 39
F R P S L PAT PA+ T+ L+P
Sbjct: 381 FKQRAPMYNSGLSPATPTPAAPTSPLTP 408
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 28.5 bits (62), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 23 LEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVGT 61
L P D S ++TLSP+ T N+ + A+G + + T
Sbjct: 599 LSPVLDPARSHSSTLSPQVTNLNEWYVCQASGAPSHLHT 637
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 28.1 bits (61), Expect = 3.5
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 6 ASARGWFSSRPPTSESDLEPATDGP--ASE--TTTLSPEATTFNDTRIPDAA 53
A++ G +SRPPTS EP+T P ASE +T+L P T +P A
Sbjct: 131 AASEGRNTSRPPTSSE--EPSTSVPPTASEVPSTSLPPTPGEGTSTSVPPTA 180
>gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens]
Length = 1543
Score = 28.1 bits (61), Expect = 3.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 1 MNSRTASARGWFSSRPPTSESDLEPATDGPASE 33
MN S +GW S R P + +LE A ASE
Sbjct: 1420 MNQSQGSRKGWKSKRSPRAAGELEEAKCRRASE 1452
>gi|238624188 diffuse panbronchiolitis critical region 1 protein
[Homo sapiens]
Length = 1393
Score = 27.7 bits (60), Expect = 4.5
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 5 TASARGWFSSRPPTSESDLEPATDGPASETTTLSPEATTFNDTRIP 50
TA+ S PT ++ P A+E TTLSP T N R P
Sbjct: 867 TANENTTLSPAEPTEHEEMTPL----ANEKTTLSPAEPTENGERTP 908
>gi|194328806 nuclear receptor subfamily 1, group H, member 3
isoform b [Homo sapiens]
Length = 387
Score = 27.7 bits (60), Expect = 4.5
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 16 PPTSESDLEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVG 60
PP S +L AS + R+P +AGGTAGVG
Sbjct: 13 PPDSAVELWKPGAQDASSQAQGGSSCILREEARMPHSAGGTAGVG 57
>gi|194294517 nuclear receptor subfamily 1, group H, member 3
isoform a [Homo sapiens]
Length = 447
Score = 27.7 bits (60), Expect = 4.5
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 16 PPTSESDLEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVG 60
PP S +L AS + R+P +AGGTAGVG
Sbjct: 13 PPDSAVELWKPGAQDASSQAQGGSSCILREEARMPHSAGGTAGVG 57
>gi|4507467 transforming growth factor, beta-induced, 68kDa
precursor [Homo sapiens]
Length = 683
Score = 27.7 bits (60), Expect = 4.5
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 52 AAGGTAGVGTMLLSFGIITVIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELE 111
AA +G+ TML G T++ + EK+ + + DP +D L
Sbjct: 258 AAVAASGLNTMLEGNGQYTLLAPT---------NEAFEKIPSETLNRILGDPEALRDLLN 308
Query: 112 QELLEHGRDAASVQAATSVQAMQGKT 137
+L+ A ++ A SV+ ++G T
Sbjct: 309 NHILKSAMCAEAIVAGLSVETLEGTT 334
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 27.7 bits (60), Expect = 4.5
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 10 GWFSSRPPTSESDLEPATDGPASETTTLSPEATTFNDTRI----PDAAGGTAGVGTMLLS 65
G+ + PP EP A+ T+ P AT+ + T + P + G++GV +S
Sbjct: 1371 GFNFTAPPVLGKHTEPPVTSSATTTSVAPPAATSTSSTAVFGSLPVTSAGSSGV----IS 1426
Query: 66 FG 67
FG
Sbjct: 1427 FG 1428
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,291,298
Number of Sequences: 37866
Number of extensions: 265514
Number of successful extensions: 1253
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 103
length of query: 162
length of database: 18,247,518
effective HSP length: 94
effective length of query: 68
effective length of database: 14,688,114
effective search space: 998791752
effective search space used: 998791752
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.