Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C3orf18 Sequence: fasta or formatted (162aa) NCBI GI: 7705887
Description:

hypothetical protein LOC51161

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         17           2
 C cysteine            0.0          0           0
 D aspartate           4.9          8           1
 E glutamate           6.8         11           2
 F phenylalanine       3.1          5           1
 G glycine             6.8         11           2
 H histidine           1.9          3           1
 I isoleucine          3.7          6           2
 K lysine              3.1          5           3
 L leucine             9.9         16           2
 M methionine          3.1          5           1
 N asparagine          2.5          4           1
 P proline             6.8         11           2
 Q glutamine           4.9          8           1
 R arginine            6.2         10           1
 S serine              8.0         13           2
 T threonine          10.5         17           3
 V valine              5.6          9           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51161 
AGER                  0.024   advanced glycosylation end product-specific receptor...
TRNP1                 0.020   TMF regulated nuclear protein 
LOC284297             0.017   hypothetical protein LOC284297 
LOC652725             0.017   PREDICTED: similar to neuron navigator 3, partial [...
NAV3                  0.017   neuron navigator 3 
EFNB2                 0.017   ephrin B2 
PTPRM                 0.017   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.017   protein tyrosine phosphatase, receptor type, M isof...
OLFML2B               0.017   olfactomedin-like 2B 
CMTM1                 0.017   chemokine-like factor superfamily 1 isoform 3 
MUC4                  0.014   mucin 4 isoform a 
ANKH                  0.014   progressive ankylosis protein 
CDH4                  0.014   cadherin 4, type 1 preproprotein 
MUC2                  0.010   mucin 2 precursor 
LOC100132062          0.010   PREDICTED: hypothetical protein 
LOC100132287          0.010   PREDICTED: hypothetical protein 
LOC100132062          0.010   PREDICTED: hypothetical protein 
GLRA1                 0.010   glycine receptor, alpha 1 isoform 1 precursor [Homo...
GORASP2               0.010   golgi reassembly stacking protein 2 
MLL4                  0.010   myeloid/lymphoid or mixed-lineage leukemia 4 
WHSC2                 0.010   Wolf-Hirschhorn syndrome candidate 2 protein 
ZIC5                  0.010   zinc finger protein of the cerebellum 5 
MAGEE1                0.010   melanoma antigen family E, 1 
TULP4                 0.010   tubby like protein 4 isoform 1 
DPCR1                 0.010   diffuse panbronchiolitis critical region 1 protein ...
NR1H3                 0.010   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.010   nuclear receptor subfamily 1, group H, member 3 iso...
TGFBI                 0.010   transforming growth factor, beta-induced, 68kDa precu...
NUP214                0.010   nucleoporin 214kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press