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Search of human proteins with 7705320
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705320 hepatoma-derived growth factor, related protein 3
[Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705320 hepatoma-derived growth factor, related protein 3 [Ho... 422 e-119
gi|4758516 hepatoma-derived growth factor isoform a [Homo sapiens] 204 5e-53
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 200 8e-52
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 200 8e-52
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 187 4e-48
gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo... 187 4e-48
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 187 4e-48
gi|186928819 hepatoma-derived growth factor isoform b [Homo sapi... 158 3e-39
gi|186928821 hepatoma-derived growth factor isoform c [Homo sapi... 157 8e-39
gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens] 137 8e-33
gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens] 71 7e-13
gi|115529449 upstream binding transcription factor, RNA polymera... 52 3e-07
gi|115529451 upstream binding transcription factor, RNA polymera... 52 3e-07
gi|7657671 upstream binding transcription factor, RNA polymerase... 52 3e-07
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 52 5e-07
gi|21396500 HIRA interacting protein 3 [Homo sapiens] 47 9e-06
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 47 1e-05
gi|168229156 NFKB activating protein [Homo sapiens] 46 2e-05
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 46 2e-05
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 46 2e-05
gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens] 45 3e-05
gi|4504191 mutS homolog 6 [Homo sapiens] 45 4e-05
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 45 4e-05
gi|7657013 apoptosis antagonizing transcription factor [Homo sap... 45 4e-05
gi|34482047 adaptor-related protein complex 3, beta 2 subunit [H... 43 2e-04
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 43 2e-04
gi|197927454 DEK oncogene isoform 2 [Homo sapiens] 43 2e-04
gi|4503249 DEK oncogene isoform 1 [Homo sapiens] 43 2e-04
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] 43 2e-04
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 41 6e-04
>gi|7705320 hepatoma-derived growth factor, related protein 3 [Homo
sapiens]
Length = 203
Score = 422 bits (1086), Expect = e-119
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK 60
MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
Sbjct: 1 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK 60
Query: 61 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA 120
DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
Sbjct: 61 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA 120
Query: 121 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS 180
SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
Sbjct: 121 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS 180
Query: 181 EGGDAGNDTRNTTSDLQKTSEGT 203
EGGDAGNDTRNTTSDLQKTSEGT
Sbjct: 181 EGGDAGNDTRNTTSDLQKTSEGT 203
>gi|4758516 hepatoma-derived growth factor isoform a [Homo sapiens]
Length = 240
Score = 204 bits (518), Expect = 5e-53
Identities = 110/221 (49%), Positives = 138/221 (62%), Gaps = 23/221 (10%)
Query: 5 RPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFP 64
R +EYK GDLVFAKMKGYPHWPARIDE+PE AVK ANKY +FFFGTHETAFLGPKDLFP
Sbjct: 6 RQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFP 65
Query: 65 YKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQS----------SSETEGEG 114
Y+E K+KFGK NKRKGF+EGLWEIENNP VK +GYQ+ Q++S ++E +G+
Sbjct: 66 YEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDK 125
Query: 115 GNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKS---YTSKKSSKQSRKSPGDEDDKDC 171
A+ SS+EEG ++ D K KNEK KR+ S K K++ G+E +
Sbjct: 126 KGNAEGSSDEEG-KLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAAT 184
Query: 172 KE---------EENKSSSEGGDAGNDTRNTTSDLQKTSEGT 203
E E+N + SE G + + + E T
Sbjct: 185 LEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEAT 225
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 200 bits (508), Expect = 8e-52
Identities = 104/203 (51%), Positives = 124/203 (61%), Gaps = 23/203 (11%)
Query: 6 PREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPY 65
P +K GDLVFAKMKGYPHWPARID++ +GAVKPP NKYPIFFFGTHETAFLGPKDLFPY
Sbjct: 2 PHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPY 61
Query: 66 KEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEE 125
+ KDK+GK NKRKGFNEGLWEI+NNP Y A SSS++E N AD S +E
Sbjct: 62 DKCKDKYGKPNKRKGFNEGLWEIQNNP---HASYSAPPPVSSSDSEAPEANPADGSDADE 118
Query: 126 ------------------GDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDED 167
DR+E D + ++ +G KRK SK++RK+ D D
Sbjct: 119 DDEDRGVMAVTAVTATAASDRMESDSDSDKSSDNSGLKRKTPALKMSVSKRARKASSDLD 178
Query: 168 DKDC--KEEENKSSSEGGDAGND 188
EEEN SS + +D
Sbjct: 179 QASVSPSEEENSESSSESEKTSD 201
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 200 bits (508), Expect = 8e-52
Identities = 104/203 (51%), Positives = 124/203 (61%), Gaps = 23/203 (11%)
Query: 6 PREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPY 65
P +K GDLVFAKMKGYPHWPARID++ +GAVKPP NKYPIFFFGTHETAFLGPKDLFPY
Sbjct: 2 PHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPY 61
Query: 66 KEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEE 125
+ KDK+GK NKRKGFNEGLWEI+NNP Y A SSS++E N AD S +E
Sbjct: 62 DKCKDKYGKPNKRKGFNEGLWEIQNNP---HASYSAPPPVSSSDSEAPEANPADGSDADE 118
Query: 126 ------------------GDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDED 167
DR+E D + ++ +G KRK SK++RK+ D D
Sbjct: 119 DDEDRGVMAVTAVTATAASDRMESDSDSDKSSDNSGLKRKTPALKMSVSKRARKASSDLD 178
Query: 168 DKDC--KEEENKSSSEGGDAGND 188
EEEN SS + +D
Sbjct: 179 QASVSPSEEENSESSSESEKTSD 201
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 187 bits (476), Expect = 4e-48
Identities = 89/160 (55%), Positives = 116/160 (72%), Gaps = 7/160 (4%)
Query: 7 REYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYK 66
R++K GDL+FAKMKGYPHWPAR+DE+P+GAVKPP NK PIFFFGTHETAFLGPKD+FPY
Sbjct: 3 RDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYS 62
Query: 67 EYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEG 126
E K+K+GK NKRKGFNEGLWEI+NNP VKF+ QA +QS++ ++ E + S+E+
Sbjct: 63 ENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDT 122
Query: 127 DRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDE 166
D E K NE + T+ K++++ RK ++
Sbjct: 123 DHEE-----KASNEDV--TKAVDITTPKAARRGRKRKAEK 155
Score = 32.0 bits (71), Expect = 0.37
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 105 QSSSETEGEGGNTADASSEEEGDRVEEDGKGKRK-----------------NEKAGSKRK 147
+S + + G T+ + SEEEGD +++G+ KRK +EK + RK
Sbjct: 258 ESKRKNLAKTGVTSTSDSEEEGD--DQEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRK 315
Query: 148 KSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSE 181
+ + ++Q K G + + E++ ++S +
Sbjct: 316 RKQEEQMETEQQNKDEGKKPEVKKVEKKRETSMD 349
Score = 29.6 bits (65), Expect = 1.8
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 125 EGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEE-ENK------ 177
E D + E+ K K+K ++ +K+ ++ K+ K + D K+ K+E E+K
Sbjct: 207 ESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAK 266
Query: 178 ----SSSEGGDAGND 188
S+S+ + G+D
Sbjct: 267 TGVTSTSDSEEEGDD 281
>gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo
sapiens]
Length = 333
Score = 187 bits (476), Expect = 4e-48
Identities = 89/160 (55%), Positives = 116/160 (72%), Gaps = 7/160 (4%)
Query: 7 REYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYK 66
R++K GDL+FAKMKGYPHWPAR+DE+P+GAVKPP NK PIFFFGTHETAFLGPKD+FPY
Sbjct: 3 RDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYS 62
Query: 67 EYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEG 126
E K+K+GK NKRKGFNEGLWEI+NNP VKF+ QA +QS++ ++ E + S+E+
Sbjct: 63 ENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDT 122
Query: 127 DRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDE 166
D E K NE + T+ K++++ RK ++
Sbjct: 123 DHEE-----KASNEDV--TKAVDITTPKAARRGRKRKAEK 155
Score = 29.6 bits (65), Expect = 1.8
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 125 EGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEE-ENK------ 177
E D + E+ K K+K ++ +K+ ++ K+ K + D K+ K+E E+K
Sbjct: 207 ESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAK 266
Query: 178 ----SSSEGGDAGND 188
S+S+ + G+D
Sbjct: 267 TGVTSTSDSEEEGDD 281
>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 187 bits (476), Expect = 4e-48
Identities = 89/160 (55%), Positives = 116/160 (72%), Gaps = 7/160 (4%)
Query: 7 REYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYK 66
R++K GDL+FAKMKGYPHWPAR+DE+P+GAVKPP NK PIFFFGTHETAFLGPKD+FPY
Sbjct: 3 RDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYS 62
Query: 67 EYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEG 126
E K+K+GK NKRKGFNEGLWEI+NNP VKF+ QA +QS++ ++ E + S+E+
Sbjct: 63 ENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDT 122
Query: 127 DRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDE 166
D E K NE + T+ K++++ RK ++
Sbjct: 123 DHEE-----KASNEDV--TKAVDITTPKAARRGRKRKAEK 155
Score = 32.0 bits (71), Expect = 0.37
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 105 QSSSETEGEGGNTADASSEEEGDRVEEDGKGKRK-----------------NEKAGSKRK 147
+S + + G T+ + SEEEGD +++G+ KRK +EK + RK
Sbjct: 258 ESKRKNLAKTGVTSTSDSEEEGD--DQEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRK 315
Query: 148 KSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSE 181
+ + ++Q K G + + E++ ++S +
Sbjct: 316 RKQEEQMETEQQNKDEGKKPEVKKVEKKRETSMD 349
Score = 29.6 bits (65), Expect = 1.8
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 125 EGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEE-ENK------ 177
E D + E+ K K+K ++ +K+ ++ K+ K + D K+ K+E E+K
Sbjct: 207 ESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAK 266
Query: 178 ----SSSEGGDAGND 188
S+S+ + G+D
Sbjct: 267 TGVTSTSDSEEEGDD 281
>gi|186928819 hepatoma-derived growth factor isoform b [Homo
sapiens]
Length = 256
Score = 158 bits (399), Expect = 3e-39
Identities = 90/200 (45%), Positives = 117/200 (58%), Gaps = 23/200 (11%)
Query: 26 PARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGL 85
P IDE+PE AVK ANKY +FFFGTHETAFLGPKDLFPY+E K+KFGK NKRKGF+EGL
Sbjct: 43 PHTIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGL 102
Query: 86 WEIENNPGVKFTGYQAIQQQS----------SSETEGEGGNTADASSEEEGDRVEEDGKG 135
WEIENNP VK +GYQ+ Q++S ++E +G+ A+ SS+EEG ++ D
Sbjct: 103 WEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDKKGNAEGSSDEEG-KLVIDEPA 161
Query: 136 KRKNEKAGSKRKKS---YTSKKSSKQSRKSPGDEDDKDCKE---------EENKSSSEGG 183
K KNEK KR+ S K K++ G+E + E E+N + SE G
Sbjct: 162 KEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAATLEVERPLPMEVEKNSTPSEPG 221
Query: 184 DAGNDTRNTTSDLQKTSEGT 203
+ + + E T
Sbjct: 222 SGRGPPQEEEEEEDEEEEAT 241
>gi|186928821 hepatoma-derived growth factor isoform c [Homo
sapiens]
Length = 233
Score = 157 bits (396), Expect = 8e-39
Identities = 90/199 (45%), Positives = 117/199 (58%), Gaps = 23/199 (11%)
Query: 27 ARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLW 86
A IDE+PE AVK ANKY +FFFGTHETAFLGPKDLFPY+E K+KFGK NKRKGF+EGLW
Sbjct: 21 AVIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGLW 80
Query: 87 EIENNPGVKFTGYQAIQQQS----------SSETEGEGGNTADASSEEEGDRVEEDGKGK 136
EIENNP VK +GYQ+ Q++S ++E +G+ A+ SS+EEG ++ D K
Sbjct: 81 EIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDKKGNAEGSSDEEG-KLVIDEPAK 139
Query: 137 RKNEKAGSKRKKS---YTSKKSSKQSRKSPGDEDDKDCKE---------EENKSSSEGGD 184
KNEK KR+ S K K++ G+E + E E+N + SE G
Sbjct: 140 EKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAATLEVERPLPMEVEKNSTPSEPGS 199
Query: 185 AGNDTRNTTSDLQKTSEGT 203
+ + + E T
Sbjct: 200 GRGPPQEEEEEEDEEEEAT 218
>gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens]
Length = 251
Score = 137 bits (344), Expect = 8e-33
Identities = 74/180 (41%), Positives = 105/180 (58%), Gaps = 15/180 (8%)
Query: 9 YKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEY 68
YK+GDLVFAK+KGY HWPARI+ + + N+Y +FFFGTHETAFL PK LFPYKE
Sbjct: 9 YKSGDLVFAKLKGYAHWPARIEHMTQ------PNRYQVFFFGTHETAFLSPKRLFPYKEC 62
Query: 69 KDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSE------TEGEGGNTADASS 122
K+KFGK NKR+GF+ GLWEIENNP V+ + ++ S + EG +
Sbjct: 63 KEKFGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKGSGDGPWPEPEAAEGDEDKPTHA 122
Query: 123 EEEGDRV-EEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSE 181
GD + + D + EK KR + + K+ +++ D++++ E E + +E
Sbjct: 123 GGGGDELGKPDDDKPTEEEKGPLKRSAGDPPEDAPKRPKEAAPDQEEE--AEAERAAEAE 180
>gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens]
Length = 553
Score = 70.9 bits (172), Expect = 7e-13
Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 24/195 (12%)
Query: 10 KAGDLVFAKMKGYPHWPARIDELPEGAVKPPANK-YPIFFFGTHETAFLGPKDLFPYKEY 68
+ GDLV+ K+ YP WP +I P+ KP K + + FFGT + A++ + L PY +
Sbjct: 7 RLGDLVWGKLGRYPPWPGKIVNPPKDLKKPRGKKCFFVKFFGTEDHAWIKVEQLKPYHAH 66
Query: 69 KDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSE----- 123
K++ K NK K F + + +E +F + Q+SS + N ++S E
Sbjct: 67 KEEMIKINKGKRFQQAVDAVE-----EFLRRAKGKDQTSSHNSSDDKNRRNSSEERSRPN 121
Query: 124 ----------EEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPG--DEDDKDC 171
EG + G+GK++ S+R K++ +QS + G +D+KD
Sbjct: 122 SGDEKRKLSLSEGKVKKNMGEGKKRVSSGSSERGSKSPLKRAQEQSPRKRGRPPKDEKDL 181
Query: 172 KEEENKSSSEGGDAG 186
E+ S+ +G AG
Sbjct: 182 TIPES-STVKGMMAG 195
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 52.0 bits (123), Expect = 3e-07
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 57 LGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGN 116
L P+D YKEY SNKRK + P K + +Q +S SE + E
Sbjct: 600 LSPQDRAAYKEYI-----SNKRKSMTK-----LRGPNPK-SSRTTLQSKSESEEDDE--- 645
Query: 117 TADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEEN 176
D E+E + E+D G + S S + ++ + DEDD + +E+
Sbjct: 646 -EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDE 704
Query: 177 KSSSEGGDAGNDTRNTTSD 195
+ SEG + + + +SD
Sbjct: 705 DNESEGSSSSSSSSGDSSD 723
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 52.0 bits (123), Expect = 3e-07
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 57 LGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGN 116
L P+D YKEY SNKRK + P K + +Q +S SE + E
Sbjct: 600 LSPQDRAAYKEYI-----SNKRKSMTK-----LRGPNPK-SSRTTLQSKSESEEDDE--- 645
Query: 117 TADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEEN 176
D E+E + E+D G + S S + ++ + DEDD + +E+
Sbjct: 646 -EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDE 704
Query: 177 KSSSEGGDAGNDTRNTTSD 195
+ SEG + + + +SD
Sbjct: 705 DNESEGSSSSSSSSGDSSD 723
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 52.0 bits (123), Expect = 3e-07
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 57 LGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGN 116
L P+D YKEY SNKRK + P K + +Q +S SE + E
Sbjct: 637 LSPQDRAAYKEYI-----SNKRKSMTK-----LRGPNPK-SSRTTLQSKSESEEDDE--- 682
Query: 117 TADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEEN 176
D E+E + E+D G + S S + ++ + DEDD + +E+
Sbjct: 683 -EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDE 741
Query: 177 KSSSEGGDAGNDTRNTTSD 195
+ SEG + + + +SD
Sbjct: 742 DNESEGSSSSSSSSGDSSD 760
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 51.6 bits (122), Expect = 5e-07
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 106 SSSETEGEGGNTADASSE--EEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSP 163
SSS++E E G+ + E EEGD E+ + + + S R+ +K+++K++ K+
Sbjct: 688 SSSDSESESGSESGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENKRTAKRNSKAK 747
Query: 164 GDEDDKDCKEEENKSSSEGGDAGNDTRNTTSDLQKTSE 201
G D +D ++E KS + D+ ND ++ D SE
Sbjct: 748 GKSDSEDGEKENEKSKT--SDSSNDESSSIEDSSSDSE 783
Score = 41.6 bits (96), Expect = 5e-04
Identities = 30/128 (23%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 74 KSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEEDG 133
+++ +K ++E E +++ + ++ + GE G++ + SSE+ E+D
Sbjct: 669 ENSAKKFYSESEEEEDSSDSSSDSESESGSESGEQGESGEEGDSNEDSSEDSSS--EQDS 726
Query: 134 KGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRNTT 193
+ R ++G + K+ T+K++SK KS D +D + + E++K+S D + +++
Sbjct: 727 ESGR---ESGLENKR--TAKRNSKAKGKS--DSEDGEKENEKSKTSDSSNDESSSIEDSS 779
Query: 194 SDLQKTSE 201
SD + SE
Sbjct: 780 SDSESESE 787
Score = 41.2 bits (95), Expect = 6e-04
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 103 QQQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKS 162
Q +S E + ++ D+SSE++ + E G ++ K SK K S+ K++ KS
Sbjct: 703 QGESGEEGDSNEDSSEDSSSEQDSESGRESGLENKRTAKRNSKAKGKSDSEDGEKENEKS 762
Query: 163 PGDE--DDKDCKEEENKSSSEG---GDAGNDTRNTTSDLQKTSE 201
+ +D+ E++ S SE ++ +++R T + +K ++
Sbjct: 763 KTSDSSNDESSSIEDSSSDSESESEPESESESRRVTKEKEKKTK 806
>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
Length = 556
Score = 47.4 bits (111), Expect = 9e-06
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 87 EIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKR 146
++E N G K + +Q+S E + + EEE ++ E++ KG K + R
Sbjct: 210 KVEGNKGTK--SLKESEQESEEEILAQKKEQREEEVEEE-EKEEDEEKGDWKPRTRSNGR 266
Query: 147 KKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGND 188
+KS ++S KQ ++ D D +EE+ +++S G D+G D
Sbjct: 267 RKSAREERSCKQKSQAKRLLGDSDSEEEQKEAASSGDDSGRD 308
Score = 37.7 bits (86), Expect = 0.007
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 102 IQQQSSSETEGEGGNTADASSEEEGD--RVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQS 159
+Q++S T+ +GG SSE+E D + E KG RK + GS + ++ S
Sbjct: 313 VQRKSEDRTQLKGGKRLSGSSEDEEDSGKGEPTAKGSRKMARLGSTSGEESDLEREVSDS 372
Query: 160 RKSPGDEDDKDCKEEENKSSSEGGDAGNDTRNTTSDLQKTSE 201
G + E +N+SS + G TR+++S + E
Sbjct: 373 EAGGGPQG-----ERKNRSSKKSSRKGR-TRSSSSSSDGSPE 408
Score = 29.3 bits (64), Expect = 2.4
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 66 KEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQ--AIQQQSSSETEGEGGNTADASSE 123
++ +++ + K + +G W+ P + G + A +++S + D+ SE
Sbjct: 237 EQREEEVEEEEKEEDEEKGDWK----PRTRSNGRRKSAREERSCKQKSQAKRLLGDSDSE 292
Query: 124 EEGDRVEEDGKGK-RKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEG 182
EE G R E ++ + T K K+ S DE+D E K S +
Sbjct: 293 EEQKEAASSGDDSGRDREPPVQRKSEDRTQLKGGKRLSGSSEDEEDSGKGEPTAKGSRKM 352
Query: 183 GDAGNDTRNTTSDLQK 198
G+ T SDL++
Sbjct: 353 ARLGS-TSGEESDLER 367
Score = 28.5 bits (62), Expect = 4.1
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 102 IQQQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRK 161
+++Q+ + + S E E + V+ K N+ S ++ S++ +K
Sbjct: 177 VKKQAPGKASVSRKQAREESEESEAEPVQRTAKKVEGNKGTKSLKESEQESEEEILAQKK 236
Query: 162 SPGDEDDKDCKEEENKSSSEGGDAGNDTRN 191
++ +++ +EEE + E GD TR+
Sbjct: 237 ---EQREEEVEEEEKEEDEEKGDWKPRTRS 263
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 46.6 bits (109), Expect = 1e-05
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 25/139 (17%)
Query: 58 GPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNT 117
G K+L +E+K + G+ ++K +G + N ++ E GEG
Sbjct: 692 GEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQE----------MEEGGEEEHGEG--- 738
Query: 118 ADASSEEEGDRVEE---DGKGKRK---NEKAGSKRKKSYTSKKSSKQSRKSPGDE--DDK 169
EEEGDR EE +G+GK + E G + K+ KK + ++ G+E D
Sbjct: 739 ----EEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQG 794
Query: 170 DCKEEENKSSSEGGDAGND 188
+ +EEE + E + G +
Sbjct: 795 EGEEEETEGRGEEKEEGGE 813
Score = 44.7 bits (104), Expect = 6e-05
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 73 GKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQ-QSSSETEGEGGNTADASSEEEGDRVEE 131
GK + + EG E E G + G ++ + E EGE G + E EG+ EE
Sbjct: 822 GKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEE 881
Query: 132 DGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEG 182
+G+G+ + E G ++ + ++ + G+E++ + K EE EG
Sbjct: 882 EGEGEGEEEGEGEGEEEE--GEGEGEEEGEGEGEEEEGEGKGEEEGEEGEG 930
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 83 EGLWEIENNPGVKFTGYQAIQQQSSSETEGEG-GNTADASSEEEGDRVEEDGKGKRKNEK 141
EG + E G + G + Q E E EG G + E EG VEE GKG+R+ E+
Sbjct: 772 EGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEE-GKGEREEEE 830
Query: 142 AGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRNTTSDLQKTSE 201
+ ++ ++ + + G+E++ + K EE EG + G + + + E
Sbjct: 831 EEGEGEE----EEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGE 886
Query: 202 G 202
G
Sbjct: 887 G 887
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 73 GKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEED 132
G+ +G EG E G + G + +++ E EGEG + E EG+ E+
Sbjct: 970 GEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEE 1029
Query: 133 GKG---KRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDK--DCKEEENK 177
G+G + + E+ G +R+K ++ ++++R+ +E+ K + EEEN+
Sbjct: 1030 GEGEGEEEEGEEEGEEREKEGEGEE-NRRNREEEEEEEGKYQETGEEENE 1078
Score = 42.4 bits (98), Expect = 3e-04
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 83 EGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRV-EEDGKGKRKNEK 141
EG WE E G + + E EGE EEEG+ EE+G+G+ + E
Sbjct: 952 EGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEG 1011
Query: 142 AGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEG 182
G + ++ + + + G+E++ + + EE + EG
Sbjct: 1012 EGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEG 1052
Score = 41.2 bits (95), Expect = 6e-04
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 104 QQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSP 163
++ E EGEG EEEG+ EE+G+GK + E + ++ + + +
Sbjct: 825 EREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGE 884
Query: 164 GD-EDDKDCKEEENKSSSEGGDAG 186
G+ E++ + + EE + EG + G
Sbjct: 885 GEGEEEGEGEGEEEEGEGEGEEEG 908
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 67 EYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEG 126
E +++ G+ + +G +G E E G + G + + E EGEG + EEE
Sbjct: 841 EGEEEEGEGEEEEGEGKGEEEGEEGEGEE-EGEEGEGEGEEEEGEGEGEEEGEGEGEEEE 899
Query: 127 DRVE--EDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEG 182
E E+G+G+ + E+ K ++ + + + G+ +D + + EE + EG
Sbjct: 900 GEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEG 957
Score = 38.1 bits (87), Expect = 0.005
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 109 ETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDD 168
E EGEG + E EG+ EE+G+GK + E + + + + + G+E++
Sbjct: 897 EEEGEG----EGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEE 952
Query: 169 KDCKEEENKSSSEGGDAG 186
+ + EE + EG + G
Sbjct: 953 GEWEGEEEEGEGEGEEEG 970
Score = 37.7 bits (86), Expect = 0.007
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 79 KGFNEGLWEIENNPGV---KFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEEDGKG 135
+G EG E E G + G + + E EGEG + EEEG+ E+ +G
Sbjct: 903 EGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEG 962
Query: 136 KRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGND 188
+ + E+ G + + ++ +E+ ++ EEE + EG G +
Sbjct: 963 EGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEE 1015
Score = 36.6 bits (83), Expect = 0.015
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 66 KEYKDKFGKSNK-RKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEG---EGGNTADAS 121
++ +++ GK K + ++G E E G + +++ E EG E G
Sbjct: 775 RKKEERAGKEEKGEEEGDQGEGEEEETEG------RGEEKEEGGEVEGGEVEEGKGEREE 828
Query: 122 SEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENK-SSS 180
EEEG+ EE+G+G+ + + + + ++ + + G+E + + +EEE +
Sbjct: 829 EEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGE 888
Query: 181 EGGDAGNDTRNTTSDLQKTSEG 202
E G+ + + ++ EG
Sbjct: 889 EEGEGEGEEEEGEGEGEEEGEG 910
Score = 36.6 bits (83), Expect = 0.015
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 67 EYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEG 126
E ++ G+ + +G EG E E + G + + + E EGE G EEEG
Sbjct: 982 EEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGE--GEGEEEEG 1039
Query: 127 DRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSE 181
EE+G+ +R+ E G + +++ ++ + + G+E+++ EE K S+
Sbjct: 1040 ---EEEGE-EREKEGEGEENRRNREEEEEEEGKYQETGEEENERQDGEEYKKVSK 1090
Score = 32.0 bits (71), Expect = 0.37
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 99 YQAIQQQSSSETEGEGGNTADASSEEEGDRVEE----DGKGKRKNEKAGSKRKKSYTSKK 154
+Q +++ + +G G E+E EE DG+ + + E+ +K+ +
Sbjct: 669 WQDEEREKGEKDKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEME 728
Query: 155 SSKQSRKSPGDEDDKDCKEEENKSSSEGGDAG 186
+ G+E++ D +EEE + EG + G
Sbjct: 729 EGGEEEHGEGEEEEGD-REEEEEKEGEGKEEG 759
Score = 31.2 bits (69), Expect = 0.63
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 113 EGGNTADASSEEEGDRVEED-GKGKRKNEKAGSKR---KKSYTSKKSSKQSRKSPGDEDD 168
EG + A+ +EE ++ E+D G+G+ + G K K+ + + +Q +K E +
Sbjct: 661 EGSSGAEHWQDEEREKGEKDKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQK----ERE 716
Query: 169 KDCKEEENKSSSEGGD 184
+ ++E N+ EGG+
Sbjct: 717 QGHQKERNQEMEEGGE 732
Score = 31.2 bits (69), Expect = 0.63
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 67 EYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGE---GGNTADASSE 123
E ++ GK + EG E E G G + ++ E EGE G + E
Sbjct: 913 EEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDG-EGEGEEEEGEWEGEEEEGEGEGEEEGE 971
Query: 124 EEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGG 183
EG+ E +G+ + + E G + + ++ + + G+ ++++ E E + E G
Sbjct: 972 GEGEEGEGEGE-EEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEG 1030
Query: 184 DA-GNDTRNTTSDLQKTSEG 202
+ G + ++ EG
Sbjct: 1031 EGEGEEEEGEEEGEEREKEG 1050
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 45.8 bits (107), Expect = 2e-05
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 9/159 (5%)
Query: 25 WPARIDELPEGAVKPP--ANKYPIFFFGTHETAFLGPKDLFP----YKEYKDKFGKSNKR 78
WP+ +D+ E +++ + + I G E L PK+ P + +D+ K +
Sbjct: 114 WPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKSTT 173
Query: 79 KGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRK 138
+ + + K + +++SS + +D+ S+ E D +ED K + K
Sbjct: 174 SASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDSDSETDSSDEDNKRRAK 233
Query: 139 NEKAGSKRKKSYT---SKKSSKQSRKSPGDEDDKDCKEE 174
K K+KK + KK SK+SRK D K+ +EE
Sbjct: 234 KAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKESQEE 272
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 124 EEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGG 183
+E VE++ K + S+ +K S +S ++S+K K + ++K SE
Sbjct: 158 DEHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKK----RRKKKSSKRKHKKYSEDS 213
Query: 184 DAGNDTRNTTSD 195
D+ +D+ +SD
Sbjct: 214 DSDSDSETDSSD 225
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 45.8 bits (107), Expect = 2e-05
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 99 YQAIQQQSSSETEGEGGNTADASSE------EEGDRVEEDGKGKRKNEKAGSKRKKSYTS 152
Y + + SS + E GN + E EE + VEED + + ++ G + ++
Sbjct: 179 YGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEE 238
Query: 153 KKSSKQSRKSPGDEDDKDCKEEENK--SSSEGGDAGNDTRNTTSDLQKTSEGT 203
++ ++ + ++D++D KEE N + SE D+G+++ + T ++ GT
Sbjct: 239 EEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGT 291
Score = 30.8 bits (68), Expect = 0.83
Identities = 19/93 (20%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 100 QAIQQQSSSETEGEGGNTADA-SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQ 158
Q+ +++ +SE G T + SS+E+G+ E + +G ++ + + ++ + +
Sbjct: 168 QSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDE 227
Query: 159 SRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRN 191
G+E++++ +EEE + E + D R+
Sbjct: 228 D----GEEEEEEEEEEEEEEEEEEEEYEQDERD 256
Score = 29.3 bits (64), Expect = 2.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 106 SSSETEGEGGNTADASSE--EEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKS 162
S E +GE D +E E+ D + + KNEK GSKRK +K+ + S
Sbjct: 5 SREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQKPS 63
Score = 27.3 bits (59), Expect = 9.1
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 52 HETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETE 111
HET G D + N+ +G E ++E + V+ + + E E
Sbjct: 183 HETGSSGSSD-------EQGNNTENEEEGVEE---DVEEDEEVEEDAEEDEEVDEDGEEE 232
Query: 112 GEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQ----SRKSPGDED 167
E + EEE + E+D + +++ R ++ S S S +S D
Sbjct: 233 EEEEEEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTD 292
Query: 168 DKDCKEEENK 177
D K++E K
Sbjct: 293 GSDEKKKERK 302
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 45.8 bits (107), Expect = 2e-05
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 99 YQAIQQQSSSETEGEGGNTADASSE------EEGDRVEEDGKGKRKNEKAGSKRKKSYTS 152
Y + + SS + E GN + E EE + VEED + + ++ G + ++
Sbjct: 179 YGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEE 238
Query: 153 KKSSKQSRKSPGDEDDKDCKEEENK--SSSEGGDAGNDTRNTTSDLQKTSEGT 203
++ ++ + ++D++D KEE N + SE D+G+++ + T ++ GT
Sbjct: 239 EEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGT 291
Score = 30.8 bits (68), Expect = 0.83
Identities = 19/93 (20%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 100 QAIQQQSSSETEGEGGNTADA-SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQ 158
Q+ +++ +SE G T + SS+E+G+ E + +G ++ + + ++ + +
Sbjct: 168 QSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDE 227
Query: 159 SRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRN 191
G+E++++ +EEE + E + D R+
Sbjct: 228 D----GEEEEEEEEEEEEEEEEEEEEYEQDERD 256
Score = 29.3 bits (64), Expect = 2.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 106 SSSETEGEGGNTADASSE--EEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKS 162
S E +GE D +E E+ D + + KNEK GSKRK +K+ + S
Sbjct: 5 SREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQKPS 63
Score = 27.3 bits (59), Expect = 9.1
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 52 HETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETE 111
HET G D + N+ +G E ++E + V+ + + E E
Sbjct: 183 HETGSSGSSD-------EQGNNTENEEEGVEE---DVEEDEEVEEDAEEDEEVDEDGEEE 232
Query: 112 GEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQ----SRKSPGDED 167
E + EEE + E+D + +++ R ++ S S S +S D
Sbjct: 233 EEEEEEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTD 292
Query: 168 DKDCKEEENK 177
D K++E K
Sbjct: 293 GSDEKKKERK 302
>gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens]
Length = 590
Score = 45.4 bits (106), Expect = 3e-05
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 7 REYKAGDLVFAKMKGYPHWPARIDELPEGAV---KPPANKYPIFFFGTHETAFLGPKDLF 63
R GD+V+ K+ G+P WPAR+ ++ G +P + + +FG+ T+FL L
Sbjct: 486 RTVAVGDIVWGKIHGFPWWPARVLDISLGQKEDGEPSWREAKVSWFGSPTTSFLSISKLS 545
Query: 64 PYKE-YKDKFGKSNK---RKGFNE 83
P+ E +K +F + K RK E
Sbjct: 546 PFSEFFKLRFNRKKKGMYRKAITE 569
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 45.1 bits (105), Expect = 4e-05
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 27/214 (12%)
Query: 2 ARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAV----KPPANKYPIFFFGTHET-AF 56
A P ++ GDLV+AKM+GYP WP + P K + + + FF T +
Sbjct: 83 AAPTSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGW 142
Query: 57 LGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEI----------ENNPGVKFTGYQAIQQQS 106
+ + L PY K K ++ K F EI N +K + S
Sbjct: 143 VSKRLLKPYTGSKSK--EAQKGGHFYSAKPEILRAMQRADEALNKDKIKRLELAVCDEPS 200
Query: 107 --SSETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKK---SSKQSRK 161
E E E G T EE + +E + + + K + GS+R K+ S +S
Sbjct: 201 EPEEEEEMEVGTTYVTDKSEEDNEIESEEEVQPKTQ--GSRRSSRQIKKRRVISDSESDI 258
Query: 162 SPGDEDDKDCKEEENKS---SSEGGDAGNDTRNT 192
D + K +EE S SS GD+ ++ N+
Sbjct: 259 GGSDVEFKPDTKEEGSSDEISSGVGDSESEGLNS 292
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 45.1 bits (105), Expect = 4e-05
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 103 QQQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKS 162
+ + S+T+ + D S + + D K +K+EK G K K KK +K++ +S
Sbjct: 424 KDKKDSKTDNKKSVKNDEESTDADSEPKGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAES 483
Query: 163 PGDEDDKDCKEEENKSSSEGG-------DAGNDTRNTTSDLQKTSE 201
E D + K+++ S + G DA DT +T ++ ++S+
Sbjct: 484 TEMESDLELKKDKKHSKEKKGSKKDIKKDARKDTESTDAEFDESSK 529
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 91 NPGVKFTGYQAIQQQS----SSETEGEGGNTADASSEEEGDRVEEDGKGK-------RKN 139
N +K+T Y + SS+ E E A S++ V++D K K +
Sbjct: 275 NYSLKYTKYTKKDTKKNAKKSSDAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKDTESTD 334
Query: 140 EKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRN 191
++G + + +KK K+ +K +D K E + S + DA ND+RN
Sbjct: 335 AESGDSKDERKDTKKDKKKLKKDDKKKDTKKYPESTDTESGDAKDARNDSRN 386
Score = 35.8 bits (81), Expect = 0.026
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 4/137 (2%)
Query: 65 YKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEE 124
Y +Y K K N +K + E E++ K + + + + + +++ E
Sbjct: 280 YTKYTKKDTKKNAKKSSDA---ESEDSKDAKKDSKKVKKNVKKDDKKKDVKKDTESTDAE 336
Query: 125 EGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGD 184
GD +E K +K++K K K +KK + + GD D K +S+ D
Sbjct: 337 SGDSKDER-KDTKKDKKKLKKDDKKKDTKKYPESTDTESGDAKDARNDSRNLKKASKNDD 395
Query: 185 AGNDTRNTTSDLQKTSE 201
D + T SE
Sbjct: 396 KKKDAKKITFSTDSESE 412
Score = 31.6 bits (70), Expect = 0.48
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 117 TADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEE-E 175
+ D+ SE E ++D K +K+ K +K KS + + S + P + K K+E +
Sbjct: 406 STDSESELESKESQKDEKKDKKDSKTDNK--KSVKNDEESTDADSEPKGDSKKGKKDEKK 463
Query: 176 NKSSSEGGDAGNDTRNTTSDLQKTSE 201
K S+ D D + + S+
Sbjct: 464 GKKDSKKDDKKKDAKKNAESTEMESD 489
Score = 30.8 bits (68), Expect = 0.83
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 22/84 (26%)
Query: 137 RKNEKAGSKRKKSYTSKKSSKQSRKSPG--DEDDKDCKEEENK----------------- 177
+ N K S + YT K + K ++KS ED KD K++ K
Sbjct: 270 QNNSKNYSLKYTKYTKKDTKKNAKKSSDAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKD 329
Query: 178 ---SSSEGGDAGNDTRNTTSDLQK 198
+ +E GD+ ++ ++T D +K
Sbjct: 330 TESTDAESGDSKDERKDTKKDKKK 353
Score = 30.8 bits (68), Expect = 0.83
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 110 TEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDE--D 167
T+ E G+ DA ++ + K+K+ +K+ T +S +S++S DE D
Sbjct: 370 TDTESGDAKDARNDSRNLKKASKNDDKKKD----AKKITFSTDSESELESKESQKDEKKD 425
Query: 168 DKDCKEEENKSSSEGGDAGNDTRNTTSD 195
KD K + KS ND +T +D
Sbjct: 426 KKDSKTDNKKS------VKNDEESTDAD 447
Score = 28.9 bits (63), Expect = 3.1
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 123 EEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEG 182
EE+ R E K K+ + KKS +S +++ +S+ S K+C +++ K S
Sbjct: 149 EEKTKRQNEADKTPLKSSHENEQSKKSKSSSETNPESQNS--KTVSKNCSQKDKKDSKNS 206
Query: 183 GDAGNDTRNTTSDLQK 198
+ +T ++ +K
Sbjct: 207 KKTNTEFLHTKNNPKK 222
>gi|7657013 apoptosis antagonizing transcription factor [Homo
sapiens]
Length = 560
Score = 45.1 bits (105), Expect = 4e-05
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 32/139 (23%)
Query: 73 GKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEED 132
GK+ RK +NE WE + PG + S+ EG G ++ EE D ED
Sbjct: 73 GKTTSRKAWNEDHWE-QTLPG--------SSDEEISDEEGSGDEDSEGLGLEEYD---ED 120
Query: 133 GKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPG----------------DEDDKDCKEEEN 176
G + ++ G R+ SKKS S K+PG D+ +EE+
Sbjct: 121 DLGAAEEQECGDHRE----SKKSRSHSAKTPGFSVQSISDFEKFTKGMDDLGSSEEEEDE 176
Query: 177 KSSSEGGDAGNDTRNTTSD 195
+S E GD D++ + +
Sbjct: 177 ESGMEEGDDAEDSQGESEE 195
Score = 27.3 bits (59), Expect = 9.1
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 65 YKEYKDKFGKSNKRKGFN-EGLWEIENNPGVKFT-GYQAIQQQSSSETEGEGGNTADASS 122
++E K S K GF+ + + + E KFT G + E E G D +
Sbjct: 133 HRESKKSRSHSAKTPGFSVQSISDFE-----KFTKGMDDLGSSEEEEDEESGMEEGDDAE 187
Query: 123 EEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRK 161
+ +G+ EED G R +E G +++S K S++ K
Sbjct: 188 DSQGES-EEDRAGDRNSEDDGV--VMTFSSVKVSEEVEK 223
>gi|34482047 adaptor-related protein complex 3, beta 2 subunit [Homo
sapiens]
Length = 1082
Score = 43.1 bits (100), Expect = 2e-04
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 108 SETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDED 167
S++EGE G T A S+ E + + S + + ++ R S ++
Sbjct: 679 SDSEGESGPTESADSDPESESESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSESEQS 738
Query: 168 DKDCKEE------ENKSSSEGGDAGNDTRNTTSDLQKTSE 201
++D K + E K + D G+D+ +++S+ + TSE
Sbjct: 739 EEDGKRKTKKKVPERKGEASSSDEGSDSSSSSSESEMTSE 778
Score = 37.7 bits (86), Expect = 0.007
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 103 QQQSSSETEGEGGNTADASSEEEGDRVEEDGKGK----RKNEKAGSKRKKSYTSKKSSKQ 158
+ +S S++ E G+ +S + D+ E++ KG+ ++E+ G ++ K ++ +
Sbjct: 698 ESESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSESEQSEEDGKRKTKKKVPERKGEA 757
Query: 159 SRKSPGDEDDKDCKEEENKSSSE 181
S G + E E S SE
Sbjct: 758 SSSDEGSDSSSSSSESEMTSESE 780
Score = 35.0 bits (79), Expect = 0.044
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 103 QQQSSSETEGEGGNTADASSEEEGDRVEEDGKG----------KRKNEKAGSKRKKSYTS 152
+ S S +E G ++ S E+ D EE G+G KRK +K +RK +S
Sbjct: 700 ESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSESEQSEEDGKRKTKKKVPERKGEASS 759
Query: 153 KKSSKQSRKSPGDEDDKDCKEEE 175
S S + + EEE
Sbjct: 760 SDEGSDSSSSSSESEMTSESEEE 782
Score = 32.7 bits (73), Expect = 0.22
Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 31/169 (18%)
Query: 14 LVFAKMKGY---PHWP-------ARIDELPE-----GAVKPPANKYPIFFFGTHETAFLG 58
L+ AK GY P WP R E+PE K + P + E+
Sbjct: 630 LLNAKATGYQELPDWPEEAPDPSVRNVEVPEWTKCSNREKRKEKEKPFYSDSEGESGPTE 689
Query: 59 PKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTA 118
D P E + KS+ G E E +N + E E +G +
Sbjct: 690 SADSDPESE-SESDSKSSSESGSGESSSESDN--------------EDQDEDEEKGRGSE 734
Query: 119 DASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDED 167
SEE+G R + +RK E A S + S +S SS+ S +E+
Sbjct: 735 SEQSEEDGKRKTKKKVPERKGE-ASSSDEGSDSSSSSSESEMTSESEEE 782
Score = 30.8 bits (68), Expect = 0.83
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 136 KRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRNTTSD 195
K N + +++K + S + D D + E ++KSSSE G + + + D
Sbjct: 663 KCSNREKRKEKEKPFYSDSEGESGPTESADSDPESESESDSKSSSESGSGESSSESDNED 722
Query: 196 LQKTSE 201
+ E
Sbjct: 723 QDEDEE 728
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 43.1 bits (100), Expect = 2e-04
Identities = 57/235 (24%), Positives = 86/235 (36%), Gaps = 37/235 (15%)
Query: 3 RPRPREYKAGDLVFAKMKGYPHWPARIDEL-----PEGAVKPPANKYPIFFFGTHETAFL 57
RP+P++ +A + AK P P EL EG P + K +
Sbjct: 2434 RPKPKKARAAEESGAKG---PRRPGEEAELLVKLDHEGVTSPKSKKAKEALLLREDPGAG 2490
Query: 58 G---PKDLFPYKEYKDKFGKSNKRKGF---NEGLWEIENNPGVKFTGY---------QAI 102
G PK L Y G S + + +G E PG+ F QA
Sbjct: 2491 GWQEPKSLLSLGSYPPAAGSSEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAE 2550
Query: 103 Q------QQSSSETEGEGGNTADASS-------EEEGDRVEEDGKGK-RKNEKAGSKRKK 148
Q + SSS + G +++ +SS EEEGD+ + G G +N A S R
Sbjct: 2551 QDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAA 2610
Query: 149 SYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRNTTSDLQKTSEGT 203
S S SS S S + SSS + + + +++S +S +
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Score = 29.3 bits (64), Expect = 2.4
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 103 QQQSSSETEGEGGNTADASSEEEGDRVEEDGK---GKRKNEKAGSKRKKSYTSK------ 153
+ + +S+ GEG + A SEE G + G+ K K ++A + + + T +
Sbjct: 2303 RSRKTSKDTGEGKDGGTAGSEEPGAKARGRGRKPSAKAKGDRAATLEEGNPTDEVPSTPL 2362
Query: 154 ----KSSKQSRKSPGDEDDKDCK 172
S+ S+KSP + DK K
Sbjct: 2363 ALEPSSTPGSKKSPPEPVDKRAK 2385
>gi|197927454 DEK oncogene isoform 2 [Homo sapiens]
Length = 341
Score = 42.7 bits (99), Expect = 2e-04
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 78 RKGFNEGLWEIENNPGV----KFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEEDG 133
+K ++G + N+ G+ K T I SS E E N ++S +E+ + EE
Sbjct: 163 KKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNKEESSDDEDKESEEEPP 222
Query: 134 KGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGND 188
K K EK K+K + SKKS K + D + +K SE D+ +D
Sbjct: 223 KKTAKREKP--KQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKESESEDSSDD 275
>gi|4503249 DEK oncogene isoform 1 [Homo sapiens]
Length = 375
Score = 42.7 bits (99), Expect = 2e-04
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 78 RKGFNEGLWEIENNPGV----KFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEEDG 133
+K ++G + N+ G+ K T I SS E E N ++S +E+ + EE
Sbjct: 197 KKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNKEESSDDEDKESEEEPP 256
Query: 134 KGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGND 188
K K EK K+K + SKKS K + D + +K SE D+ +D
Sbjct: 257 KKTAKREKP--KQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKESESEDSSDD 309
>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
Length = 755
Score = 42.7 bits (99), Expect = 2e-04
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 4 PRPREYKAGDLVFAKMKGYPHWPARIDELPEG------AVKPPANKYPIFFFGTHETAFL 57
P R GD+V+AK+ G+P WPARI + V+ A I +FG+ T+FL
Sbjct: 648 PDGRTICVGDIVWAKIYGFPWWPARILTITVSRKDNGLLVRQEAR---ISWFGSPTTSFL 704
Query: 58 GPKDLFPYKE-YKDKFGKSNKRKG 80
L P+ E ++ +F K KRKG
Sbjct: 705 ALSQLSPFLENFQSRFNK--KRKG 726
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 41.2 bits (95), Expect = 6e-04
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 67 EYKDKFGKSNK-RKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEE 125
E K + GK +K KG +G + N G A +++ + E GN D + E
Sbjct: 139 EEKGEAGKEDKDEKGEEDGKEDKNGNE----KGEDAKEKEDGKKGEDGKGNGEDGKEKGE 194
Query: 126 GDRVEEDGK----------GKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEE 175
++ EED K GK K +K K K +K + ++ G +++ KE+E
Sbjct: 195 DEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKE 254
Query: 176 NKSSSEGG 183
+ E G
Sbjct: 255 DLKEEEEG 262
Score = 39.3 bits (90), Expect = 0.002
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 103 QQQSSSETEGEGGNTADASSEEEGDRVEEDGK-GKRKNEKAGSKRKKSYTSKKSSKQSRK 161
++ + E + +A E++ ++ EEDGK K NEK ++K K +
Sbjct: 127 EEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNG 186
Query: 162 SPGDEDDKDCKEEENKSSSEGGD 184
G E +D KEEE++ E GD
Sbjct: 187 EDGKEKGEDEKEEEDR--KETGD 207
Score = 36.2 bits (82), Expect = 0.020
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 102 IQQQSSSETEGEGGN-----TADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSS 156
+++++ + +GG A+ +EEE + +E+ + + K E K K ++
Sbjct: 100 VKEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEEDQNEEKGE--AGKEDKDEKGEEDG 157
Query: 157 KQSRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRNTTSDLQKTSE 201
K+ + G+E +D KE+E+ E G + + +K E
Sbjct: 158 KEDKN--GNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEE 200
Score = 35.8 bits (81), Expect = 0.026
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 97 TGYQAIQQQSSSET--EGEGGNTADASSEEEGDRVEEDG------KGKRKNEKAGSKRKK 148
T +A+ ++ +E GE T +SE+E V+E+ KG K E ++ K
Sbjct: 66 TKQEAVVEEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEAVAAEVKN 125
Query: 149 SYTSKKSSKQSR---KSPGDEDDKDCK-EEENKSSSEGGDAGNDTRNTTSDLQKTSEG 202
+K ++ + K ++DKD K EE+ K G + G D + D +K +G
Sbjct: 126 EEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKE-KEDGKKGEDG 182
Score = 29.3 bits (64), Expect = 2.4
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 103 QQQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKK 148
+++ E EGGN +A E+E + EE+GK + + ++ K+++
Sbjct: 232 EKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEEDEIKEDDGKKEE 277
Score = 28.9 bits (63), Expect = 3.1
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 66 KEYKDKFGKSNKRK---GFNEGLWEIENNPGVKF-----TGYQAIQQQSSSETEGEGGNT 117
KE KD+ G+ + ++ G +G E G K G ++ + E + T
Sbjct: 146 KEDKDEKGEEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKET 205
Query: 118 ADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENK 177
D E+G E+ K + K+ K K+ K+ + + G E + +EEE K
Sbjct: 206 GDGKENEDGK--EKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGK 263
Query: 178 SSSE 181
E
Sbjct: 264 EEDE 267
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.304 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,209,042
Number of Sequences: 37866
Number of extensions: 466792
Number of successful extensions: 6018
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 404
Number of HSP's that attempted gapping in prelim test: 2810
Number of HSP's gapped (non-prelim): 2582
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.