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Search of human proteins with 7524363
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
(398 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 834 0.0
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens] 616 e-176
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] 614 e-176
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens] 553 e-157
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens] 532 e-151
gi|34878709 paired box protein 2 isoform c [Homo sapiens] 390 e-108
gi|34878716 paired box protein 2 isoform d [Homo sapiens] 384 e-107
gi|34878701 paired box protein 2 isoform b [Homo sapiens] 383 e-106
gi|34878703 paired box protein 2 isoform e [Homo sapiens] 374 e-104
gi|34878699 paired box protein 2 isoform a [Homo sapiens] 372 e-103
gi|9951920 paired box 5 [Homo sapiens] 340 1e-93
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 222 4e-58
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 222 4e-58
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 213 3e-55
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 212 4e-55
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 207 1e-53
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 207 1e-53
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 207 1e-53
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 207 1e-53
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 207 1e-53
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 206 2e-53
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 201 7e-52
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 201 7e-52
gi|197276661 paired box 1 [Homo sapiens] 194 9e-50
gi|7242167 paired box 9 [Homo sapiens] 194 1e-49
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens] 191 1e-48
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens] 191 1e-48
gi|170784824 paired box 4 [Homo sapiens] 164 1e-40
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 46 7e-05
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 44 2e-04
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 834 bits (2154), Expect = 0.0
Identities = 398/398 (100%), Positives = 398/398 (100%)
Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
Query: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA 300
ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA
Sbjct: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA 300
Query: 301 PPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSPPADRAAM 360
PPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSPPADRAAM
Sbjct: 301 PPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSPPADRAAM 360
Query: 361 PPLPSQAWWQEVNTLAMPMATPPTPPTARPGASPTPAC 398
PPLPSQAWWQEVNTLAMPMATPPTPPTARPGASPTPAC
Sbjct: 361 PPLPSQAWWQEVNTLAMPMATPPTPPTARPGASPTPAC 398
>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
Length = 450
Score = 616 bits (1588), Expect = e-176
Identities = 309/329 (93%), Positives = 309/329 (93%), Gaps = 10/329 (3%)
Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
Query: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA 300
ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVA
Sbjct: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD 300
Query: 301 P--PFWI--------CSKSAPGSRPSMPF 319
P PF I S S P S S F
Sbjct: 301 PHSPFAIKQETPEVSSSSSTPSSLSSSAF 329
>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
Length = 387
Score = 614 bits (1584), Expect = e-176
Identities = 303/318 (95%), Positives = 306/318 (96%), Gaps = 2/318 (0%)
Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
Query: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA 300
ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVA
Sbjct: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAG 300
Query: 301 PPFWICSKSAPGSRPSMP 318
+ + PG P +P
Sbjct: 301 RE--MVGPTLPGYPPHIP 316
>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
Length = 321
Score = 553 bits (1425), Expect = e-157
Identities = 297/398 (74%), Positives = 301/398 (75%), Gaps = 77/398 (19%)
Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
Query: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA 300
ERQHYPEAYASPSHTKGEQ G+ P R TH T P
Sbjct: 241 ERQHYPEAYASPSHTKGEQ--------------GERWWGP------RCPDTHPTSP---- 276
Query: 301 PPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSPPADRAAM 360
P R +M P LP + WW + AM
Sbjct: 277 ----------PADRAAM--PPLP-------------SQAWW-----------QEVNTLAM 300
Query: 361 PPLPSQAWWQEVNTLAMPMATPPTPPTARPGASPTPAC 398
P MATPPTPPTARPGASPTPAC
Sbjct: 301 P-----------------MATPPTPPTARPGASPTPAC 321
>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
Length = 287
Score = 532 bits (1370), Expect = e-151
Identities = 261/270 (96%), Positives = 264/270 (97%)
Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60
Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120
Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180
Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240
Query: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNST 270
ERQHYPEAYASPSHTKGEQ + L + +T
Sbjct: 241 ERQHYPEAYASPSHTKGEQEVNTLAMPMAT 270
Score = 65.9 bits (159), Expect = 6e-11
Identities = 29/29 (100%), Positives = 29/29 (100%)
Query: 370 QEVNTLAMPMATPPTPPTARPGASPTPAC 398
QEVNTLAMPMATPPTPPTARPGASPTPAC
Sbjct: 259 QEVNTLAMPMATPPTPPTARPGASPTPAC 287
>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
Length = 396
Score = 390 bits (1002), Expect = e-108
Identities = 221/397 (55%), Positives = 262/397 (65%), Gaps = 13/397 (3%)
Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
Query: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241
ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE
Sbjct: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246
Query: 242 RQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLSTHQTYPVVA 299
R YP+ + + H K EQG Y LP L LD+ K++L+ S P LG N+S QTYPVV
Sbjct: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVT 306
Query: 300 APPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSPPADRAA 359
+ S + PG P +PP S + G P + S P + A
Sbjct: 307 GRD--MASTTLPGYPPH-----VPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRKLA 359
Query: 360 MPPLPSQAWWQEVNTLAMPMATPPTPPTARPGASPTP 396
P Q ++ A ATP T PT R G S TP
Sbjct: 360 EVPPCVQP--TGASSPATRTATPSTRPTTRLGDSATP 394
>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
Length = 408
Score = 384 bits (987), Expect = e-107
Identities = 216/386 (55%), Positives = 257/386 (66%), Gaps = 18/386 (4%)
Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
Query: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241
ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE
Sbjct: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246
Query: 242 RQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLSTHQTYPVVA 299
R YP+ + + H K EQG Y LP L LD+ K++L+ S P LG N+S QTYPVV
Sbjct: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVT 306
Query: 300 APPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSPPADRAA 359
+ S + PG P +P P +S G + G +P S P A
Sbjct: 307 GRD--MASTTLPGYPPHVP-PTGQGSYPTSTLAGMVPGSEFSG------NPYSHPQYTAY 357
Query: 360 MPPLPSQAWWQEVNTLAMPMATPPTP 385
++AW L MP PP P
Sbjct: 358 -----NEAWRFSNPALLMPPPGPPLP 378
>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
Length = 393
Score = 383 bits (983), Expect = e-106
Identities = 200/319 (62%), Positives = 236/319 (73%), Gaps = 6/319 (1%)
Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
Query: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241
ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE
Sbjct: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246
Query: 242 RQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLSTHQTYPVVA 299
R YP+ + + H K EQG Y LP L LD+ K++L+ S P LG N+S QTYPVV
Sbjct: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVT 306
Query: 300 APPFWICSKSAPGSRPSMP 318
+ S + PG P +P
Sbjct: 307 GRD--MASTTLPGYPPHVP 323
>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
Length = 431
Score = 374 bits (960), Expect = e-104
Identities = 218/409 (53%), Positives = 260/409 (63%), Gaps = 41/409 (10%)
Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
Query: 182 INGLLGIAQPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSG 218
ING+LGI + +KRK D+ + +D S+ DSQS
Sbjct: 187 INGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS 246
Query: 219 PRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKAT 277
RKHLR D F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++
Sbjct: 247 LRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSS 306
Query: 278 LTPSNTP-LGRNLSTHQTYPVVAAPPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQ 336
L+ S P LG N+S QTYPVV + S + PG P +P P +S
Sbjct: 307 LSASTNPELGSNVSGTQTYPVVTGRD--MASTTLPGYPPHVP-PTGQGSYPTSTLAGMVP 363
Query: 337 GERWWGPRCPDTHPTSPPADRAAMPPLPSQAWWQEVNTLAMPMATPPTP 385
G + G +P S P A ++AW L MP PP P
Sbjct: 364 GSEFSG------NPYSHPQYTAY-----NEAWRFSNPALLMPPPGPPLP 401
>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
Length = 416
Score = 372 bits (956), Expect = e-103
Identities = 202/342 (59%), Positives = 239/342 (69%), Gaps = 29/342 (8%)
Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
Query: 182 INGLLGIAQPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSG 218
ING+LGI + +KRK D+ + +D S+ DSQS
Sbjct: 187 INGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS 246
Query: 219 PRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKAT 277
RKHLR D F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++
Sbjct: 247 LRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSS 306
Query: 278 LTPSNTP-LGRNLSTHQTYPVVAAPPFWICSKSAPGSRPSMP 318
L+ S P LG N+S QTYPVV + S + PG P +P
Sbjct: 307 LSASTNPELGSNVSGTQTYPVVTGRD--MASTTLPGYPPHVP 346
>gi|9951920 paired box 5 [Homo sapiens]
Length = 391
Score = 340 bits (873), Expect = 1e-93
Identities = 186/317 (58%), Positives = 224/317 (70%), Gaps = 15/317 (4%)
Query: 7 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66
R+GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYY
Sbjct: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
Query: 67 ETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVS 126
ETGSI+PGVIGGSKPKVATPKVVEKI +YKRQNPTMFAWEIRDRLLAE VCDNDTVPSVS
Sbjct: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133
Query: 127 SINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLL 186
SINRIIRTKVQQP N P+ + H+++ + +VT S +DS GS+YSI+G+L
Sbjct: 134 SINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
Query: 187 GIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQH 244
GI P +D KRK D+ Q+S + S RK +R D F+Q LE L+ FERQH
Sbjct: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQH 245
Query: 245 YPEAYASPSHTKGEQ--GLYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPVVAAP 301
Y + + + K EQ + L LDD KA L +P+ +G ++ Q+YP+V
Sbjct: 246 YSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGR 305
Query: 302 PFWICSKSAPGSRPSMP 318
+ S + PG P +P
Sbjct: 306 D--LASTTLPGYPPHVP 320
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 222 bits (566), Expect = 4e-58
Identities = 123/253 (48%), Positives = 156/253 (61%), Gaps = 22/253 (8%)
Query: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
Query: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSV 125
YETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRLL+EGVC ND +PSV
Sbjct: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
Query: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSSAVTPPESPQSDSLG 177
SSINR++R + + D + G T P ++V P P D
Sbjct: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSV--PGQPTQDGCQ 178
Query: 178 STYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLE 237
G S +DSD+ RL + + + RT +F+Q +E LE
Sbjct: 179 QQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------RT-SFTQEQIEALE 226
Query: 238 CPFERQHYPEAYA 250
FER HYP+ +A
Sbjct: 227 KEFERTHYPDVFA 239
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 222 bits (566), Expect = 4e-58
Identities = 123/253 (48%), Positives = 156/253 (61%), Gaps = 22/253 (8%)
Query: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
Query: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSV 125
YETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRLL+EGVC ND +PSV
Sbjct: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
Query: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSSAVTPPESPQSDSLG 177
SSINR++R + + D + G T P ++V P P D
Sbjct: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSV--PGQPTQDGCQ 178
Query: 178 STYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLE 237
G S +DSD+ RL + + + RT +F+Q +E LE
Sbjct: 179 QQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------RT-SFTQEQIEALE 226
Query: 238 CPFERQHYPEAYA 250
FER HYP+ +A
Sbjct: 227 KEFERTHYPDVFA 239
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 213 bits (541), Expect = 3e-55
Identities = 123/267 (46%), Positives = 156/267 (58%), Gaps = 36/267 (13%)
Query: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR------------- 52
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
Query: 53 -VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRL 111
VS+GCVSKILGRYYETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRL
Sbjct: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
Query: 112 LAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSS 163
L+EGVC ND +PSVSSINR++R + + D + G T P +
Sbjct: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
Query: 164 AVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHL 223
+V P P D G S +DSD+ RL + + +
Sbjct: 181 SV--PGQPTQDGCQQQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------ 227
Query: 224 RTDAFSQHHLEPLECPFERQHYPEAYA 250
RT +F+Q +E LE FER HYP+ +A
Sbjct: 228 RT-SFTQEQIEALEKEFERTHYPDVFA 253
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 212 bits (540), Expect = 4e-55
Identities = 120/242 (49%), Positives = 153/242 (63%), Gaps = 30/242 (12%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSI 128
GSIRPG IGGSKPKV TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSSI
Sbjct: 94 GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
Query: 129 NRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGI 188
+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 154 SRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL-- 191
Query: 189 AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYPE 247
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP+
Sbjct: 192 ----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPD 244
Query: 248 AY 249
Y
Sbjct: 245 IY 246
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 207 bits (528), Expect = 1e-53
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
Query: 247 EAY 249
+ Y
Sbjct: 245 DIY 247
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 207 bits (528), Expect = 1e-53
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
Query: 247 EAY 249
+ Y
Sbjct: 245 DIY 247
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 207 bits (528), Expect = 1e-53
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
Query: 247 EAY 249
+ Y
Sbjct: 245 DIY 247
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 207 bits (528), Expect = 1e-53
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
Query: 247 EAY 249
+ Y
Sbjct: 245 DIY 247
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 207 bits (528), Expect = 1e-53
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
Query: 247 EAY 249
+ Y
Sbjct: 245 DIY 247
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 206 bits (525), Expect = 2e-53
Identities = 155/413 (37%), Positives = 196/413 (47%), Gaps = 84/413 (20%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
GSIRPG IGGSKP+ VATP V +KI +YKR+NP MF+WEIRDRLL +G CD TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSS 153
Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
I+R++R K F + A K G + +SI+G+LG
Sbjct: 154 ISRVLRIK----FGKKEEEDEADKKEDDGEK------------------KAKHSIDGILG 191
Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
DK D D ++S+ RK R+ F+ LE LE FER HYP
Sbjct: 192 ------DKGNRLDEGSD-----VESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP 240
Query: 247 EAYASP---------------------SHTKGEQGLYPLPLLNSTL-----DDGKATLTP 280
+ Y + + + G L N L G TL P
Sbjct: 241 DIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPP 300
Query: 281 SNTPLGRNLSTHQTYPVVAAPPFWICSKSAPGSRPSMPFPMLPPCT----GSSRARPSSQ 336
P TYP GS P P LPP T G + A ++
Sbjct: 301 YQLP-------DSTYPTTTI-------SQDGGSTVHRPQP-LPPSTMHQGGLAAAAAAAD 345
Query: 337 GERWWGPRCPDTHPT----SPPADRAAMPPLPSQAWWQEVNTLAMPMATPPTP 385
+G R + + +P A M P+ + Q ++ L P A PP P
Sbjct: 346 TSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVPPQP 398
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 201 bits (512), Expect = 7e-52
Identities = 155/415 (37%), Positives = 196/415 (47%), Gaps = 86/415 (20%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPS--V 125
GSIRPG IGGSKP+ VATP V +KI +YKR+NP MF+WEIRDRLL +G CD TVPS V
Sbjct: 94 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 153
Query: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGL 185
SSI+R++R K F + A K G + +SI+G+
Sbjct: 154 SSISRVLRIK----FGKKEEEDEADKKEDDGEK------------------KAKHSIDGI 191
Query: 186 LGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQH 244
LG DK D D ++S+ RK R+ F+ LE LE FER H
Sbjct: 192 LG------DKGNRLDEGSD-----VESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTH 240
Query: 245 YPEAYASP---------------------SHTKGEQGLYPLPLLNSTL-----DDGKATL 278
YP+ Y + + + G L N L G TL
Sbjct: 241 YPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTL 300
Query: 279 TPSNTPLGRNLSTHQTYPVVAAPPFWICSKSAPGSRPSMPFPMLPPCT----GSSRARPS 334
P P TYP GS P P LPP T G + A +
Sbjct: 301 PPYQLP-------DSTYPTTTI-------SQDGGSTVHRPQP-LPPSTMHQGGLAAAAAA 345
Query: 335 SQGERWWGPRCPDTHPT----SPPADRAAMPPLPSQAWWQEVNTLAMPMATPPTP 385
+ +G R + + +P A M P+ + Q ++ L P A PP P
Sbjct: 346 ADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVPPQP 400
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 201 bits (512), Expect = 7e-52
Identities = 155/415 (37%), Positives = 196/415 (47%), Gaps = 86/415 (20%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPS--V 125
GSIRPG IGGSKP+ VATP V +KI +YKR+NP MF+WEIRDRLL +G CD TVPS V
Sbjct: 94 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 153
Query: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGL 185
SSI+R++R K F + A K G + +SI+G+
Sbjct: 154 SSISRVLRIK----FGKKEEEDEADKKEDDGEK------------------KAKHSIDGI 191
Query: 186 LGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQH 244
LG DK D D ++S+ RK R+ F+ LE LE FER H
Sbjct: 192 LG------DKGNRLDEGSD-----VESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTH 240
Query: 245 YPEAYASP---------------------SHTKGEQGLYPLPLLNSTL-----DDGKATL 278
YP+ Y + + + G L N L G TL
Sbjct: 241 YPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTL 300
Query: 279 TPSNTPLGRNLSTHQTYPVVAAPPFWICSKSAPGSRPSMPFPMLPPCT----GSSRARPS 334
P P TYP GS P P LPP T G + A +
Sbjct: 301 PPYQLP-------DSTYPTTTI-------SQDGGSTVHRPQP-LPPSTMHQGGLAAAAAA 345
Query: 335 SQGERWWGPRCPDTHPT----SPPADRAAMPPLPSQAWWQEVNTLAMPMATPPTP 385
+ +G R + + +P A M P+ + Q ++ L P A PP P
Sbjct: 346 ADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVPPQP 400
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 194 bits (494), Expect = 9e-50
Identities = 102/183 (55%), Positives = 122/183 (66%), Gaps = 8/183 (4%)
Query: 10 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 69
+G +NQLGG FVNGRPLP +R RIV+LA G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 99 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 158
Query: 70 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 129
SI PG IGGSKP+V TP VV+ I DYK+ +P +FAWEIRDRLLA+GVCD VPSVSSI+
Sbjct: 159 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 218
Query: 130 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAV-----TPPESPQSDSLGSTYSING 184
RI+R K+ +L P +P + + P SP +GS + G
Sbjct: 219 RILRNKIG---SLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPG 275
Query: 185 LLG 187
G
Sbjct: 276 TAG 278
>gi|7242167 paired box 9 [Homo sapiens]
Length = 341
Score = 194 bits (493), Expect = 1e-49
Identities = 109/205 (53%), Positives = 130/205 (63%), Gaps = 33/205 (16%)
Query: 11 GGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 70
G +NQLGG FVNGRPLP +R RIV+LA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 6 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 65
Query: 71 IRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINR 130
I PG IGGSKP+V TP VV+ I YK+++P +FAWEIRDRLLA+GVCD VPSVSSI+R
Sbjct: 66 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 125
Query: 131 IIRTKV----QQ-----------------PFN------LPMDSCVATKSLSPGHTLIPSS 163
I+R K+ QQ P+N P+ + A PG IP S
Sbjct: 126 ILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGS 185
Query: 164 AVTPPESPQSDSLGSTYSINGLLGI 188
P P S++S+ +LGI
Sbjct: 186 VAMPRTWP------SSHSVTDILGI 204
>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
Length = 206
Score = 191 bits (484), Expect = 1e-48
Identities = 91/128 (71%), Positives = 108/128 (84%), Gaps = 1/128 (0%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 128 INRIIRTK 135
I+RI+R+K
Sbjct: 154 ISRILRSK 161
>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
Length = 215
Score = 191 bits (484), Expect = 1e-48
Identities = 91/128 (71%), Positives = 108/128 (84%), Gaps = 1/128 (0%)
Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 128 INRIIRTK 135
I+RI+R+K
Sbjct: 154 ISRILRSK 161
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 164 bits (415), Expect = 1e-40
Identities = 86/155 (55%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 13 LNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIR 72
+NQLGG FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG +
Sbjct: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
Query: 73 PGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRII 132
P IGGSKP++ATP VV +I K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
Query: 133 RTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTP 167
R +Q+ LP + L+P S + TP
Sbjct: 121 RA-LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETP 154
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 45.8 bits (107), Expect = 7e-05
Identities = 64/236 (27%), Positives = 85/236 (36%), Gaps = 45/236 (19%)
Query: 161 PSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPR 220
PS A P + S+S G + A +R+ +Q S S DS SSSS
Sbjct: 451 PSPAPKPRKVELSESEEDK---GGKMAAADSVQQRRQYRRQNQQS---SSDSGSSSSSED 504
Query: 221 KHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTP 280
+ + + H++ E R+H P ASPS K ++ T G+ +P
Sbjct: 505 ERPK-----RSHVKNGEVGRRRRHSPSRSASPSPRKRQK---------ETSPRGRRRRSP 550
Query: 281 SNTPLGRNLSTHQTYPVVAAPPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERW 340
S P R S P A PP + P P P PP R S R+
Sbjct: 551 SPPPTRRRRS-----PSPAPPP---RRRRTPTPPPRRRTPSPPP------RRRSPSPRRY 596
Query: 341 WGPRCPDTHPTSPPADRAAMPPLPSQAWWQEVNTLAMPMATPPTPPTARPGASPTP 396
P P+ PP R A PP P + A+P PP R SP P
Sbjct: 597 SPPIQRRYSPSPPPKRRTASPPPPPKR-----------RASPSPPPKRRVSHSPPP 641
Score = 33.1 bits (74), Expect = 0.45
Identities = 52/220 (23%), Positives = 72/220 (32%), Gaps = 19/220 (8%)
Query: 189 AQPGSDKRKMDDSDQDSCRLSIDS-------QSSSSGPRKHLRTDAFSQHHLEPLECPFE 241
A P KR+ + S + R S S + P + RT P P
Sbjct: 529 ASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRR 588
Query: 242 RQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLST----HQTYPV 297
R P Y+ P + P S K +PS P R + ++ PV
Sbjct: 589 RSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPV 648
Query: 298 VAAPPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSPPADR 357
+ SK GS PS + R PS + PR P T + PP R
Sbjct: 649 TKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPR------PRAPQTSSSPPPVRR 702
Query: 358 -AAMPPLPSQAWWQEVNTLAMPMATPPTPPTARPGASPTP 396
A+ P Q+ + T P P + ASP+P
Sbjct: 703 GASSSPQRRQSPSPSTRPIRRVSRT-PEPKKIKKAASPSP 741
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 44.3 bits (103), Expect = 2e-04
Identities = 41/156 (26%), Positives = 54/156 (34%), Gaps = 26/156 (16%)
Query: 268 NSTLDDGKATLTPSNTPLGRNLSTHQTYP---------------VVAAPPFWICSKSAPG 312
N ATL P N+P ++ + P AAPP + AP
Sbjct: 144 NVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPP 203
Query: 313 SRPSMP----FPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSP-----PADRAAMPPL 363
S + P P PP T + S+ E P P +P P + A+PP
Sbjct: 204 SSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPT 263
Query: 364 PSQAWWQEVNTLAMP--MATPPTPPTARPGASPTPA 397
PS + A P A PPTP P +PA
Sbjct: 264 PSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPA 299
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,156,490
Number of Sequences: 37866
Number of extensions: 1167144
Number of successful extensions: 6017
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 381
Number of HSP's that attempted gapping in prelim test: 4800
Number of HSP's gapped (non-prelim): 1258
length of query: 398
length of database: 18,247,518
effective HSP length: 104
effective length of query: 294
effective length of database: 14,309,454
effective search space: 4206979476
effective search space used: 4206979476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.