Guide to the Human Genome
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Name: PAX3 Sequence: fasta or formatted (407aa) NCBI GI: 31563346
Description:

paired box 3 isoform PAX3h

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [483aa] paired box 3 isoform PAX3i
alt prot [479aa] paired box 3 isoform PAX3
alt prot [484aa] paired box 3 isoform PAX3d
alt prot [505aa] paired box 3 isoform PAX3e
alt prot [403aa] paired box 3 isoform PAX3g
alt prot [215aa] paired box 3 isoform PAX3a
alt prot [206aa] paired box 3 isoform PAX3b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         22           1
 C cysteine            1.2          5           1
 D aspartate           3.4         14           1
 E glutamate           7.1         29           4
 F phenylalanine       3.4         14           1
 G glycine             6.9         28           2
 H histidine           2.7         11           2
 I isoleucine          5.7         23           2
 K lysine              4.9         20           2
 L leucine             6.4         26           2
 M methionine          2.0          8           2
 N asparagine          3.2         13           1
 P proline             9.8         40           2
 Q glutamine           4.9         20           1
 R arginine            8.1         33           2
 S serine             11.1         45           3
 T threonine           5.9         24           2
 V valine              4.9         20           1
 W tryptophan          0.7          3           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   paired box 3 isoform PAX3h 
PAX3                  0.985   paired box 3 isoform PAX3g 
PAX3                  0.966   paired box 3 isoform PAX3e 
PAX3                  0.966   paired box 3 isoform PAX3d 
PAX3                  0.966   paired box 3 isoform PAX3 
PAX3                  0.958   paired box 3 isoform PAX3i 
PAX7                  0.748   paired box 7 isoform 2 
PAX7                  0.742   paired box 7 isoform 1 
PAX7                  0.742   paired box 7 isoform 3 
PAX3                  0.466   paired box 3 isoform PAX3b 
PAX3                  0.464   paired box 3 isoform PAX3a 
PAX6                  0.286   paired box gene 6 isoform a 
PAX6                  0.286   paired box gene 6 isoform a 
PAX6                  0.273   paired box gene 6 isoform b 
PAX5                  0.252   paired box 5 
PAX2                  0.243   paired box protein 2 isoform c 
PAX2                  0.242   paired box protein 2 isoform d 
PAX2                  0.238   paired box protein 2 isoform b 
PAX2                  0.231   paired box protein 2 isoform e 
PAX8                  0.227   paired box 8 isoform PAX8D 
PAX8                  0.227   paired box 8 isoform PAX8E 
PAX8                  0.227   paired box 8 isoform PAX8C 
PAX8                  0.227   paired box 8 isoform PAX8B 
PAX8                  0.227   paired box 8 isoform PAX8A 
PAX2                  0.227   paired box protein 2 isoform a 
PAX1                  0.216   paired box 1 
PAX9                  0.208   paired box 9 
PAX4                  0.197   paired box 4 
ARX                   0.107   aristaless related homeobox 
PRRX1                 0.099   paired mesoderm homeobox 1 isoform pmx-1a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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