Guide to the Human Genome
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Name: MESDC2 Sequence: fasta or formatted (234aa) NCBI GI: 74136552
Description:

mesoderm development candidate 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         15           2
 C cysteine            1.3          3           1
 D aspartate           9.0         21           3
 E glutamate           8.1         19           2
 F phenylalanine       2.6          6           1
 G glycine             7.7         18           3
 H histidine           0.4          1           1
 I isoleucine          3.4          8           1
 K lysine             12.0         28           4
 L leucine             9.4         22           8
 M methionine          2.6          6           2
 N asparagine          2.6          6           1
 P proline             6.4         15           3
 Q glutamine           2.6          6           1
 R arginine            5.6         13           1
 S serine              8.1         19           2
 T threonine           4.3         10           1
 V valine              4.3         10           2
 W tryptophan          1.7          4           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mesoderm development candidate 2 
KIAA0040              0.018   hypothetical protein LOC9674 
KIAA0040              0.018   hypothetical protein LOC9674 
KIAA0040              0.018   hypothetical protein LOC9674 
KIAA0040              0.018   hypothetical protein LOC9674 
FAT4                  0.018   FAT tumor suppressor homolog 4 
CMYA5                 0.016   cardiomyopathy associated 5 
CAMSAP1               0.016   calmodulin regulated spectrin-associated protein 1 ...
MTDH                  0.016   metadherin 
LOC100294088          0.016   PREDICTED: hypothetical protein, partial 
TAF3                  0.016   RNA polymerase II transcription factor TAFII140 [Ho...
NSBP1                 0.016   nucleosomal binding protein 1 
CNGA1                 0.016   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.016   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
LEPREL2               0.016   leprecan-like 2 
APBA1                 0.016   amyloid beta A4 precursor protein-binding, family A,...
C6orf10               0.016   chromosome 6 open reading frame 10 
ZYX                   0.013   zyxin 
ZYX                   0.013   zyxin 
ACIN1                 0.013   apoptotic chromatin condensation inducer 1 
PTPN1                 0.013   protein tyrosine phosphatase, non-receptor type 1 [Ho...
ANKLE2                0.013   ankyrin repeat and LEM domain containing 2 
LOC100294364          0.011   PREDICTED: hypothetical protein 
LARP1                 0.011   la related protein isoform 2 
LARP1                 0.011   la related protein isoform 1 
CCDC108               0.011   coiled-coil domain containing 108 isoform 1 
CEP170                0.011   centrosomal protein 170kDa isoform beta 
CEP170                0.011   centrosomal protein 170kDa isoform alpha 
CEP170                0.011   centrosomal protein 170kDa isoform gamma 
C20orf151             0.011   hypothetical protein LOC140893 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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