Guide to the Human Genome
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Name: PSRC1 Sequence: fasta or formatted (333aa) NCBI GI: 73858561
Description:

proline/serine-rich coiled-coil 1 isoform a

Referenced in:

p53 Pathway

Other entries for this name:
alt mRNA [333aa] proline/serine-rich coiled-coil 1 isoform a
alt prot [310aa] proline/serine-rich coiled-coil 1 isoform b
alt prot [363aa] proline/serine-rich coiled-coil 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         26           3
 C cysteine            0.6          2           1
 D aspartate           3.9         13           1
 E glutamate           5.4         18           3
 F phenylalanine       1.2          4           1
 G glycine             6.3         21           2
 H histidine           0.9          3           1
 I isoleucine          1.8          6           1
 K lysine              3.6         12           1
 L leucine            10.2         34           2
 M methionine          1.2          4           1
 N asparagine          2.7          9           1
 P proline            14.4         48           2
 Q glutamine           3.0         10           1
 R arginine           12.0         40           2
 S serine             13.2         44           3
 T threonine           5.7         19           1
 V valine              6.0         20           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 1.000   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.975   proline/serine-rich coiled-coil 1 isoform c 
PSRC1                 0.628   proline/serine-rich coiled-coil 1 isoform b 
APC2                  0.047   adenomatosis polyposis coli 2 
GTSE1                 0.047   G-2 and S-phase expressed 1 
SRRM1                 0.046   serine/arginine repetitive matrix 1 
WIPF1                 0.043   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.043   WAS/WASL interacting protein family, member 1 
PRG4                  0.041   proteoglycan 4 isoform D 
PRG4                  0.041   proteoglycan 4 isoform C 
PRG4                  0.041   proteoglycan 4 isoform B 
PRG4                  0.041   proteoglycan 4 isoform A 
LOC100289242          0.040   PREDICTED: hypothetical protein XP_002342243 
MAST3                 0.040   microtubule associated serine/threonine kinase 3 [H...
MUC7                  0.038   mucin 7, secreted precursor 
MUC7                  0.038   mucin 7, secreted precursor 
MUC7                  0.038   mucin 7, secreted precursor 
NACA                  0.038   nascent polypeptide-associated complex alpha subuni...
WIPF2                 0.038   WIRE protein 
TNK2                  0.035   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.035   tyrosine kinase, non-receptor, 2 isoform 2 
COL27A1               0.035   collagen, type XXVII, alpha 1 
FMNL1                 0.035   formin-like 1 
KIAA1671              0.035   hypothetical protein LOC85379 
LOC100289065          0.035   PREDICTED: hypothetical protein 
LOC100289134          0.035   PREDICTED: hypothetical protein XP_002343933 
LOC100289065          0.035   PREDICTED: hypothetical protein XP_002343789 
ATXN2L                0.035   ataxin 2 related protein isoform B 
ATXN2L                0.035   ataxin 2 related protein isoform E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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