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Search of human proteins with 7019435
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7019435 interleukin 17C [Homo sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7019435 interleukin 17C [Homo sapiens] 417 e-117
gi|19923715 interleukin 17D precursor [Homo sapiens] 75 4e-14
gi|16418375 interleukin 17F precursor [Homo sapiens] 67 8e-12
gi|27477081 interleukin 25 isoform 2 [Homo sapiens] 64 1e-10
gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens] 64 1e-10
gi|4504651 interleukin 17A precursor [Homo sapiens] 62 2e-10
gi|7657228 interleukin 17B precursor [Homo sapiens] 59 2e-09
gi|154240732 hypothetical protein LOC201243 [Homo sapiens] 35 0.032
gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 31 0.78
gi|239753749 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|239748226 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|239742127 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|21483182 zinc finger with KRAB and SCAN domains 5 [Homo sapiens] 30 1.0
gi|11036642 zinc finger with KRAB and SCAN domains 5 [Homo sapiens] 30 1.0
gi|33286436 gametogenetin [Homo sapiens] 30 1.0
gi|21361340 glycogen synthase kinase 3 beta isoform 1 [Homo sapi... 30 1.7
gi|45387951 transmembrane protein 108 [Homo sapiens] 29 2.3
gi|210147493 transmembrane protein 108 [Homo sapiens] 29 2.3
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 29 2.3
gi|20270245 GLI-Kruppel family member GLI4 [Homo sapiens] 28 5.0
gi|30410045 late cornified envelope 2A [Homo sapiens] 28 5.0
gi|31377548 phosphoglucomutase 2-like 1 [Homo sapiens] 28 6.6
gi|16751923 WAP, follistatin/kazal, immunoglobulin, kunitz and n... 28 6.6
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 27 8.6
gi|83977459 pleckstrin homology-like domain, family A, member 1 ... 27 8.6
>gi|7019435 interleukin 17C [Homo sapiens]
Length = 197
Score = 417 bits (1073), Expect = e-117
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MTLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAKWGQ 60
MTLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAKWGQ
Sbjct: 1 MTLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAKWGQ 60
Query: 61 ALPVALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRY 120
ALPVALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRY
Sbjct: 61 ALPVALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRY 120
Query: 121 PQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTPGAFAFHT 180
PQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTPGAFAFHT
Sbjct: 121 PQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTPGAFAFHT 180
Query: 181 EFIHVPVGCTCVLPRSV 197
EFIHVPVGCTCVLPRSV
Sbjct: 181 EFIHVPVGCTCVLPRSV 197
>gi|19923715 interleukin 17D precursor [Homo sapiens]
Length = 202
Score = 75.1 bits (183), Expect = 4e-14
Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 101 THQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRR 160
T+ RS+SPW YR+ D RYP+ L A CLCRGC+ G E S + +VLRR
Sbjct: 86 TNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRR 145
Query: 161 RPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCV 192
P G + T ++ +PVGCTCV
Sbjct: 146 TPACAGGRSVYTEA-------YVTIPVGCTCV 170
>gi|16418375 interleukin 17F precursor [Homo sapiens]
Length = 163
Score = 67.4 bits (163), Expect = 8e-12
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 14/100 (14%)
Query: 97 LEADTHQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLL 156
+ + RS SPW Y V D +RYP ++ A+C GCI+A+ G+E ++NSV + Q L
Sbjct: 70 MSRNIESRSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQ-GKEDISMNSVPIQQETL 128
Query: 157 VLRRR--PCSRDGSGLPTPGAFAFHTEFIHVPVGCTCVLP 194
V+RR+ CS +F E + V VGCTCV P
Sbjct: 129 VVRRKHQGCS-----------VSFQLEKVLVTVGCTCVTP 157
>gi|27477081 interleukin 25 isoform 2 [Homo sapiens]
Length = 161
Score = 63.5 bits (153), Expect = 1e-10
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 102 HQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAAL-NSVRLLQSLLVLRR 160
+ R+ISPWRY +D D +R PQ L A CLC C+ +TG NS L + V R
Sbjct: 67 NSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYR 126
Query: 161 RPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCVLPR 195
RPC + T + V + C CV PR
Sbjct: 127 RPCHGEKG---THKGYCLERRLYRVSLACVCVRPR 158
>gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens]
Length = 177
Score = 63.5 bits (153), Expect = 1e-10
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 102 HQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAAL-NSVRLLQSLLVLRR 160
+ R+ISPWRY +D D +R PQ L A CLC C+ +TG NS L + V R
Sbjct: 83 NSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYR 142
Query: 161 RPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCVLPR 195
RPC + T + V + C CV PR
Sbjct: 143 RPCHGEKG---THKGYCLERRLYRVSLACVCVRPR 174
>gi|4504651 interleukin 17A precursor [Homo sapiens]
Length = 155
Score = 62.4 bits (150), Expect = 2e-10
Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 99 ADTHQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVL 158
+D + RS SPW + D +RYP + A+C GCI+A G +NSV + Q +LVL
Sbjct: 64 SDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINA-DGNVDYHMNSVPIQQEILVL 122
Query: 159 RRRPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCVLP 194
RR P S F E I V VGCTCV P
Sbjct: 123 RREPPHCPNS---------FRLEKILVSVGCTCVTP 149
>gi|7657228 interleukin 17B precursor [Homo sapiens]
Length = 180
Score = 59.3 bits (142), Expect = 2e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 45 GQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEAD---- 100
GQ P LA G +P+ LVS ++ + +ER + E+ +
Sbjct: 31 GQGRPGPLAPGP---HQVPLDLVSRMKPYARMEEYERNIEEMVAQLRNSSELAQRKCEVN 87
Query: 101 -----THQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSL 155
+++RS+SPW Y ++ D R P L A CLC GC++ T +E ++ SV + S
Sbjct: 88 LQLWMSNKRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVF-SQ 146
Query: 156 LVLRRRPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCV 192
+ +RRR C P G + VGCTC+
Sbjct: 147 VPVRRRLCPPP----PRTGPCRQRAVMETIAVGCTCI 179
>gi|154240732 hypothetical protein LOC201243 [Homo sapiens]
Length = 501
Score = 35.4 bits (80), Expect = 0.032
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 16 CLAHHDP-----SLRGHPH--SHGTPHCYSAEELPLG---QAPPHLLARGAKWGQALPV- 64
C HH P SL GH + SH +PH + PLG Q P + R A W +ALP
Sbjct: 339 CREHHSPQSHQQSLLGHAYGQSHRSPHPSTE---PLGYSSQDPREVRRRAADWAEALPAW 395
Query: 65 ------ALVSSLEAASHRGRHERPSA 84
A ++ L+ ASH+ R PS+
Sbjct: 396 RPLTTSASLTVLDEASHQ-RTPAPSS 420
>gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
[Homo sapiens]
Length = 1704
Score = 30.8 bits (68), Expect = 0.78
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 16 CLAHHDPSLRGHPHSHGTPHCY--SAEELPLGQAPPH 50
CL H D LR P H + +C + E PLGQ H
Sbjct: 1615 CLEHKDDKLRNRPRKHRSFNCLEDTEPEAPLGQPKGH 1651
>gi|239753749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 30.4 bits (67), Expect = 1.0
Identities = 40/145 (27%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 22 PSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAK--WGQALP--VALVSSLEAASH-- 75
PS R HSH H + PL + PP A A W ++ P VAL+ S
Sbjct: 7 PSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRESCGSQGA 66
Query: 76 -RGRH--ERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDR--------YPQKL 124
RGR RP+ RP A R SP ++ + +R +P+
Sbjct: 67 PRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVA 126
Query: 125 AFAECLCRGCIDARTGRETAALNSV 149
C R A +GR A L S+
Sbjct: 127 PQGRCKAR----AESGRARALLTSM 147
>gi|239748226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 30.4 bits (67), Expect = 1.0
Identities = 40/145 (27%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 22 PSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAK--WGQALP--VALVSSLEAASH-- 75
PS R HSH H + PL + PP A A W ++ P VAL+ S
Sbjct: 7 PSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRESCGSQGA 66
Query: 76 -RGRH--ERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDR--------YPQKL 124
RGR RP+ RP A R SP ++ + +R +P+
Sbjct: 67 PRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVA 126
Query: 125 AFAECLCRGCIDARTGRETAALNSV 149
C R A +GR A L S+
Sbjct: 127 PQGRCKAR----AESGRARALLTSM 147
>gi|239742127 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 30.4 bits (67), Expect = 1.0
Identities = 40/145 (27%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 22 PSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAK--WGQALP--VALVSSLEAASH-- 75
PS R HSH H + PL + PP A A W ++ P VAL+ S
Sbjct: 7 PSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRESCGSQGA 66
Query: 76 -RGRH--ERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDR--------YPQKL 124
RGR RP+ RP A R SP ++ + +R +P+
Sbjct: 67 PRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVA 126
Query: 125 AFAECLCRGCIDARTGRETAALNSV 149
C R A +GR A L S+
Sbjct: 127 PQGRCKAR----AESGRARALLTSM 147
>gi|21483182 zinc finger with KRAB and SCAN domains 5 [Homo sapiens]
Length = 839
Score = 30.4 bits (67), Expect = 1.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 64 VALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRYPQK 123
VA++ +++ R ER CP + P ++ Q S SP VDT ++ PQK
Sbjct: 122 VAVIENIQ----RELEERRQQIVACPDVLPRKMATPGAVQESCSPHPLTVDTQPEQAPQK 177
>gi|11036642 zinc finger with KRAB and SCAN domains 5 [Homo sapiens]
Length = 839
Score = 30.4 bits (67), Expect = 1.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 64 VALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRYPQK 123
VA++ +++ R ER CP + P ++ Q S SP VDT ++ PQK
Sbjct: 122 VAVIENIQ----RELEERRQQIVACPDVLPRKMATPGAVQESCSPHPLTVDTQPEQAPQK 177
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 30.4 bits (67), Expect = 1.0
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 40 EELPLGQAPPH-----LLARGAKWGQ--ALPVALVSSLEAASHRGRHERPSATTQCPVLR 92
EE APP LL +KW + PV + L ASHRG+ + PS P
Sbjct: 88 EEAAAVSAPPPAPAGTLLPGPSKWQKPAGTPVPRIRRLLEASHRGQGDPPSLRPLKPPPP 147
Query: 93 PEEVLEADTHQRSISPWRYRVDT 115
P ++ DT R+ S + ++T
Sbjct: 148 PRQLSVKDTVPRAPSQFPPPLET 170
>gi|21361340 glycogen synthase kinase 3 beta isoform 1 [Homo
sapiens]
Length = 433
Score = 29.6 bits (65), Expect = 1.7
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 22 PSLRGHP---HSHGTPHCYSAEELPLGQAPPHLLARGAKWGQALPVALVSSLEAASH 75
P ++ HP S GT H S + + PP +A ++ + P A ++ LEA +H
Sbjct: 294 PQIKAHPWTKDSSGTGHFTSGVRVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 350
>gi|45387951 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 2.3
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 17 LAHHDPSLRGHPHSHG---------TPHCYSAEELPLGQAPPHLLARGAK-----WGQAL 62
+A P GHP +H PH S L G AP + +K GQA
Sbjct: 81 MATPTPRAEGHPPTHTISTIAATVTAPH--SESSLSTGPAPAAMATTSSKPEGRPRGQAA 138
Query: 63 PVALVSSLEAASHRGRHERPSATTQCPVLRP 93
P L++ A+ R P TT+ P P
Sbjct: 139 PTILLTKPPGATSRPTTAPPRTTTRRPPRPP 169
>gi|210147493 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 2.3
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 17 LAHHDPSLRGHPHSHG---------TPHCYSAEELPLGQAPPHLLARGAK-----WGQAL 62
+A P GHP +H PH S L G AP + +K GQA
Sbjct: 81 MATPTPRAEGHPPTHTISTIAATVTAPH--SESSLSTGPAPAAMATTSSKPEGRPRGQAA 138
Query: 63 PVALVSSLEAASHRGRHERPSATTQCPVLRP 93
P L++ A+ R P TT+ P P
Sbjct: 139 PTILLTKPPGATSRPTTAPPRTTTRRPPRPP 169
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 29.3 bits (64), Expect = 2.3
Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 34/155 (21%)
Query: 28 PHSHGTPHCYSAEELPL-GQAPPHLLAR--GAKWG-----QALPVALVSSLEAASHRGRH 79
PH H +PH + L L G +PP R G + G ++LP + ++ + HR
Sbjct: 1392 PHHH-SPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHR--- 1447
Query: 80 ERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRYPQKLAFAE-CLCRGCIDAR 138
P+A P+L H PWR + +R P + F E C R + +
Sbjct: 1448 LPPTAPGVGPLLLQLGTEPPAPHPGVSKPWRSAAPEEPERLPLHVRFLENCQPRAPVTSG 1507
Query: 139 TGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTP 173
G P S DG G+P P
Sbjct: 1508 RG---------------------PPSEDGPGVPPP 1521
>gi|20270245 GLI-Kruppel family member GLI4 [Homo sapiens]
Length = 376
Score = 28.1 bits (61), Expect = 5.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 19 HHDPSLRGHPHSHGTP 34
HH+P L H H HG+P
Sbjct: 29 HHEPQLHLHGHQHGSP 44
>gi|30410045 late cornified envelope 2A [Homo sapiens]
Length = 106
Score = 28.1 bits (61), Expect = 5.0
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 16 CLAHHDPSLRGHPHSHGTPHCYSAE 40
CL+HH P L H H H +P C E
Sbjct: 68 CLSHHRPRLF-HRHRHQSPDCCECE 91
>gi|31377548 phosphoglucomutase 2-like 1 [Homo sapiens]
Length = 622
Score = 27.7 bits (60), Expect = 6.6
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 84 ATTQCPVLRPEE---VLEADTHQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTG 140
+T +CP PEE VLE R + TD D +LA AE GC TG
Sbjct: 299 STVKCP--NPEEGESVLELSLRLAEKENARVVLATDPDA--DRLAAAELQENGCWKVFTG 354
Query: 141 RETAAL 146
E AAL
Sbjct: 355 NELAAL 360
>gi|16751923 WAP, follistatin/kazal, immunoglobulin, kunitz and
netrin domain containing 1 precursor [Homo sapiens]
Length = 548
Score = 27.7 bits (60), Expect = 6.6
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 10 LTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAKWGQALPVALVSS 69
LT+ + C + LRG H H P + P PP AR +P AL SS
Sbjct: 133 LTYYNRCYMDAEACLRGL-HLHIVPCKHVLSWPPSSPGPPETTARPTPGAAPVPPALYSS 191
Query: 70 LEAASHRGRHERPSATTQCPVL---RPEEVLEADTHQR 104
S + +A+ C V P E +HQR
Sbjct: 192 ---PSPQAVQVGGTASLHCDVSGRPPPAVTWEKQSHQR 226
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1 [Homo
sapiens]
Length = 2346
Score = 27.3 bits (59), Expect = 8.6
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 44 LGQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHERPSATTQCPVLRPE--------E 95
LGQ+ LA+G++ L L S L H+ ++ L E E
Sbjct: 1526 LGQSFREQLAQGSQ----LTERLTSKLSTKDHKSEKDQAGLEPLALRLSRELQEKEKVIE 1581
Query: 96 VLEADTHQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCID 136
VL+A RS++P +D R P +F C D
Sbjct: 1582 VLQAKLDARSLTPSSSHALSDSHRSPSSTSFLSDELEACSD 1622
>gi|83977459 pleckstrin homology-like domain, family A, member 1
[Homo sapiens]
Length = 401
Score = 27.3 bits (59), Expect = 8.6
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 19 HHDPSLRGHPHSHGTPHCY-SAEELPLGQAPPHLLARG 55
H P HPHSH PH + ++P PH G
Sbjct: 353 HPHPHPHSHPHSHPHPHPHPHPHQIPHPHPQPHSQPHG 390
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,103,877
Number of Sequences: 37866
Number of extensions: 429543
Number of successful extensions: 1134
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 29
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.