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Search of human proteins with 6912622
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912622 RAD54 homolog B [Homo sapiens]
(910 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912622 RAD54 homolog B [Homo sapiens] 1852 0.0
gi|216548193 RAD54-like protein [Homo sapiens] 483 e-136
gi|216548186 RAD54-like protein [Homo sapiens] 483 e-136
gi|4557565 excision repair cross-complementing rodent repair def... 274 2e-73
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 272 1e-72
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 264 3e-70
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 255 1e-67
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 252 1e-66
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 243 6e-64
gi|168823443 RAD54-like 2 [Homo sapiens] 234 2e-61
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 230 5e-60
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 230 5e-60
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 230 5e-60
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 230 5e-60
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 229 7e-60
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 229 7e-60
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 229 7e-60
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 229 7e-60
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 228 1e-59
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 227 3e-59
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 227 3e-59
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 227 3e-59
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 224 2e-58
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 224 2e-58
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 224 3e-58
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 224 4e-58
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 217 3e-56
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 217 3e-56
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 217 5e-56
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 216 6e-56
>gi|6912622 RAD54 homolog B [Homo sapiens]
Length = 910
Score = 1852 bits (4796), Expect = 0.0
Identities = 910/910 (100%), Positives = 910/910 (100%)
Query: 1 MRRSAAPSQLQGNSFKKPKFIPPGRSNPGLNEEITKLNPDIKLFEGVAINNTFLPSQNDL 60
MRRSAAPSQLQGNSFKKPKFIPPGRSNPGLNEEITKLNPDIKLFEGVAINNTFLPSQNDL
Sbjct: 1 MRRSAAPSQLQGNSFKKPKFIPPGRSNPGLNEEITKLNPDIKLFEGVAINNTFLPSQNDL 60
Query: 61 RICSLNLPSEESTREINNRDNCSGKYCFEAPTLATLDPPHTVHSAPKEVAVSKEQEEKSD 120
RICSLNLPSEESTREINNRDNCSGKYCFEAPTLATLDPPHTVHSAPKEVAVSKEQEEKSD
Sbjct: 61 RICSLNLPSEESTREINNRDNCSGKYCFEAPTLATLDPPHTVHSAPKEVAVSKEQEEKSD 120
Query: 121 SLVKYFSVVWCKPSKKKHKKWEGDAVLIVKGKSFILKNLEGKDIGRGIGYKFKELEKIEE 180
SLVKYFSVVWCKPSKKKHKKWEGDAVLIVKGKSFILKNLEGKDIGRGIGYKFKELEKIEE
Sbjct: 121 SLVKYFSVVWCKPSKKKHKKWEGDAVLIVKGKSFILKNLEGKDIGRGIGYKFKELEKIEE 180
Query: 181 GQTLMICGKEIEVMGVISPDDFSSGRCFQLGGGSTAISHSSQVARKCFSNPFKSVCKPSS 240
GQTLMICGKEIEVMGVISPDDFSSGRCFQLGGGSTAISHSSQVARKCFSNPFKSVCKPSS
Sbjct: 181 GQTLMICGKEIEVMGVISPDDFSSGRCFQLGGGSTAISHSSQVARKCFSNPFKSVCKPSS 240
Query: 241 KENRQNDFQNCKPRHDPYTPNSLVMPRPDKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQ 300
KENRQNDFQNCKPRHDPYTPNSLVMPRPDKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQ
Sbjct: 241 KENRQNDFQNCKPRHDPYTPNSLVMPRPDKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQ 300
Query: 301 KEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLI 360
KEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLI
Sbjct: 301 KEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLI 360
Query: 361 VTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQI 420
VTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQI
Sbjct: 361 VTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQI 420
Query: 421 KNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPG 480
KNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPG
Sbjct: 421 KNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPG 480
Query: 481 ILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLP 540
ILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLP
Sbjct: 481 ILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLP 540
Query: 541 PKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFN 600
PKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFN
Sbjct: 541 PKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFN 600
Query: 601 SIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPT 660
SIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPT
Sbjct: 601 SIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPT 660
Query: 661 EKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSS 720
EKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSS
Sbjct: 661 EKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSS 720
Query: 721 KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQ 780
KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQ
Sbjct: 721 KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQ 780
Query: 781 RQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDLLDCECTGEEVHTGD 840
RQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDLLDCECTGEEVHTGD
Sbjct: 781 RQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDLLDCECTGEEVHTGD 840
Query: 841 SLEKFIVSRDCQLGPHHQKSNSLKPLSMSQLKQWKHFSGDHLNLTDPFLERITENVSFIF 900
SLEKFIVSRDCQLGPHHQKSNSLKPLSMSQLKQWKHFSGDHLNLTDPFLERITENVSFIF
Sbjct: 841 SLEKFIVSRDCQLGPHHQKSNSLKPLSMSQLKQWKHFSGDHLNLTDPFLERITENVSFIF 900
Query: 901 QNITTQATGT 910
QNITTQATGT
Sbjct: 901 QNITTQATGT 910
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 483 bits (1244), Expect = e-136
Identities = 277/589 (47%), Positives = 372/589 (63%), Gaps = 31/589 (5%)
Query: 255 HDPYTPNSLVMPRP---DKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECV 311
HDP ++LV+ P + Q +K P V VV+DP L LRPHQ+EG+ FL+ECV
Sbjct: 110 HDPLEKDALVLYEPPPLSAHDQLKLDKEKLP-VHVVVDPILSKVLRPHQREGVKFLWECV 168
Query: 312 MGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWK 371
R+ G G I+ADEMGLGKTLQCI+L+WTL Q P KP I K ++V+P SLV NW
Sbjct: 169 TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC-KPEIDKAVVVSPSSLVKNWY 227
Query: 372 KEFQKWLGSERIKIFTVDQ------DHKVEEFIKS----IFYSVLIISYEMLLRSLDQIK 421
E KWLG RI+ +D D K+E F+ + +LIISYE + ++
Sbjct: 228 NEVGKWLGG-RIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQ 286
Query: 422 NIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGI 481
L+ICDEGHRLKNS +T AL SL+ +R++++GTPIQNDL E+F+L+ FVN GI
Sbjct: 287 KGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGI 346
Query: 482 LGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPP 541
LG+ ++K +E PI+ R+ +ASE +++LGE R ELT + ++RRT +I++KYLP
Sbjct: 347 LGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPV 406
Query: 542 KIENVVFCRPGALQIELYRKLLN-SQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFN 600
KIE VV CR LQ ELY++ L ++ L+G + S L I +LKKLCNHP L+++
Sbjct: 407 KIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS-LSSITSLKKLCNHPALIYD 465
Query: 601 SIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPT 660
E+E + G L +FP Y+ + SGK+ VL +LAV R +
Sbjct: 466 KCVEEEDG-----------FVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRS-RSS 513
Query: 661 EKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSS 720
+KVVLVSNYTQTL++ +++C+ Y Y RLDG I +R ++V+ FNS S F+F+LSS
Sbjct: 514 DKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573
Query: 721 KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQ 780
KAGG GLNLIG + L+++D DWNPA D QAM+RVWRDGQK +IYRLL+ GTIEEKI+Q
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633
Query: 781 RQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDLLDC 829
RQ K+ L VVD + E FS+ ELK LF L E+S THD L C
Sbjct: 634 RQSHKKALSSCVVDEEQDVER-HFSLGELKELFILDEASLSDTHDRLHC 681
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 483 bits (1244), Expect = e-136
Identities = 277/589 (47%), Positives = 372/589 (63%), Gaps = 31/589 (5%)
Query: 255 HDPYTPNSLVMPRP---DKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECV 311
HDP ++LV+ P + Q +K P V VV+DP L LRPHQ+EG+ FL+ECV
Sbjct: 110 HDPLEKDALVLYEPPPLSAHDQLKLDKEKLP-VHVVVDPILSKVLRPHQREGVKFLWECV 168
Query: 312 MGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWK 371
R+ G G I+ADEMGLGKTLQCI+L+WTL Q P KP I K ++V+P SLV NW
Sbjct: 169 TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC-KPEIDKAVVVSPSSLVKNWY 227
Query: 372 KEFQKWLGSERIKIFTVDQ------DHKVEEFIKS----IFYSVLIISYEMLLRSLDQIK 421
E KWLG RI+ +D D K+E F+ + +LIISYE + ++
Sbjct: 228 NEVGKWLGG-RIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQ 286
Query: 422 NIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGI 481
L+ICDEGHRLKNS +T AL SL+ +R++++GTPIQNDL E+F+L+ FVN GI
Sbjct: 287 KGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGI 346
Query: 482 LGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPP 541
LG+ ++K +E PI+ R+ +ASE +++LGE R ELT + ++RRT +I++KYLP
Sbjct: 347 LGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPV 406
Query: 542 KIENVVFCRPGALQIELYRKLLN-SQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFN 600
KIE VV CR LQ ELY++ L ++ L+G + S L I +LKKLCNHP L+++
Sbjct: 407 KIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS-LSSITSLKKLCNHPALIYD 465
Query: 601 SIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPT 660
E+E + G L +FP Y+ + SGK+ VL +LAV R +
Sbjct: 466 KCVEEEDG-----------FVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRS-RSS 513
Query: 661 EKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSS 720
+KVVLVSNYTQTL++ +++C+ Y Y RLDG I +R ++V+ FNS S F+F+LSS
Sbjct: 514 DKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573
Query: 721 KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQ 780
KAGG GLNLIG + L+++D DWNPA D QAM+RVWRDGQK +IYRLL+ GTIEEKI+Q
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633
Query: 781 RQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDLLDC 829
RQ K+ L VVD + E FS+ ELK LF L E+S THD L C
Sbjct: 634 RQSHKKALSSCVVDEEQDVER-HFSLGELKELFILDEASLSDTHDRLHC 681
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 274 bits (701), Expect = 2e-73
Identities = 184/536 (34%), Positives = 282/536 (52%), Gaps = 41/536 (7%)
Query: 291 YLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL-----QC 345
+L L +Q+ G+ +L+E + G IL DEMGLGKT+Q I+ + L +
Sbjct: 502 FLFKKLFKYQQTGVRWLWELHCQ-----QAGGILGDEMGLGKTIQIIAFLAGLSYSKIRT 556
Query: 346 QGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIF--TVDQDHKVEEFIKSIFY 403
+G + T+IV P ++++ W KEF W R+ I T HK E+ I+ + +
Sbjct: 557 RGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAH 616
Query: 404 --SVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGT 461
+LI SY + D I + +I DEGH+++N T A RIIL+G+
Sbjct: 617 CHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGS 676
Query: 462 PIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTC 521
P+QN+L+E ++L DF+ PG LG+L + + + PI + +AS + + + A L
Sbjct: 677 PMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRD 736
Query: 522 LTGLFILRRTQEIINKYL--PPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENS 579
++LRR + + L P K E V+FCR Q ++Y+ ++S+ V L G ++
Sbjct: 737 TINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIF 796
Query: 580 PHLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEK 639
LI AL+K+CNHP L K + + E++ Y K
Sbjct: 797 SGLI---ALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYW-----------------K 836
Query: 640 ESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQR 699
SGK+ V+ LL + H + ++V+L S Q L+IL+ + Y Y ++DG T I+ R
Sbjct: 837 RSGKMIVVESLLKIWH--KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASR 894
Query: 700 QQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQ 759
Q ++ +N + +S F+FLL+++ GG+G+NL G + +++YD DWNP+TD QA R WR GQ
Sbjct: 895 QPLITRYN-EDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQ 953
Query: 760 KYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
K V +YRLLT GTIEEKIY RQI KQ L V L + F +L LFTL
Sbjct: 954 KKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRV--LKDPKQRRFFKSNDLYELFTL 1007
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 272 bits (695), Expect = 1e-72
Identities = 188/565 (33%), Positives = 299/565 (52%), Gaps = 65/565 (11%)
Query: 299 HQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKT 358
HQKEGI FLY + +GR G ILAD+MGLGKT+Q I+ + G + ++
Sbjct: 99 HQKEGIAFLYS----LYRDGRKGGILADDMGLGKTVQIIAFL-----SGMFDAS-LVNHV 148
Query: 359 LIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFY--SVLIISYEMLLRS 416
L++ P +L+N W KEF KW R+K F + + I V+I +Y+ML+ +
Sbjct: 149 LLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINN 208
Query: 417 LDQIKNIK-----FDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFF 471
Q+ + + +D +I DE H++K S+ K+ ++ R++LTGTPIQN+LQE +
Sbjct: 209 WQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELW 268
Query: 472 ALIDFVNPG-ILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRR 530
+L DF G +LG+L +++ YE PI +RE A+ EK LG + + L + + LRR
Sbjct: 269 SLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRR 328
Query: 531 TQEIINK------------------------YLPPKIENVVFCRPGALQIELYRKLLNSQ 566
T+E + K L K + +++ R LQ E+YRK ++
Sbjct: 329 TKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLD 388
Query: 567 VVRFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECS-------STCDKNEEKSL 619
++ + L+E L +G LKKLC+HP LL + C S D NE +
Sbjct: 389 HIK---ELLMETRSPLAELGVLKKLCDHPRLL----SARACCLLNLGTFSAQDGNEGED- 440
Query: 620 YKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEV 679
+ + + L+ +ESGK+ L LL + + + ++ S Q LNI++ +
Sbjct: 441 SPDVDHIDQVTDDTLM---EESGKMIFLMDLLKRLRD--EGHQTLVFSQSRQILNIIERL 495
Query: 680 CKRHGYAYTRLDGQ-TPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILY 738
K + R+DG T + +R++ ++ F Q+ + +FLL+++ GGVGL L + ++++
Sbjct: 496 LKNRHFKTLRIDGTVTHLLEREKRINLF-QQNKDYSVFLLTTQVGGVGLTLTAATRVVIF 554
Query: 739 DIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKT 798
D WNPATD QA+ RV+R GQK V +YRL+T GT+EEKIY+RQ+ K L K
Sbjct: 555 DPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTG-EKK 613
Query: 799 SEHIQFSVEELKNLFTLHESSDCVT 823
+ FS +EL+ LFT+ + + VT
Sbjct: 614 NPFRYFSKQELRELFTIEDLQNSVT 638
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 264 bits (674), Expect = 3e-70
Identities = 175/506 (34%), Positives = 266/506 (52%), Gaps = 61/506 (12%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQ----CQGPYGG 351
LR +Q G+ +L + + NG G ILADEMGLGKTLQ I+L+ L+ GP+
Sbjct: 183 LRDYQIRGLNWL----ISLYENGVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPH-- 235
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIF----YSVLI 407
+++ P S ++NW EF++W+ S R+ F D+D + FI+ + V +
Sbjct: 236 -------MVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAA-FIRDEMMPGEWDVCV 287
Query: 408 ISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDL 467
SYEM+++ K + L+ DE HR+KN K + + R++LTGTP+QN+L
Sbjct: 288 TSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNL 347
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFI 527
E +AL++F+ P + S + ++ L +++L ER A L F+
Sbjct: 348 HELWALLNFLLPDVFNSADDFDSWFDTKNCLG--------DQKLVERLHAVLKP----FL 395
Query: 528 LRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGA 587
LRR + + K LPPK E ++ +Q E Y K+L + G ++ L +
Sbjct: 396 LRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQ 455
Query: 588 LKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVL 647
L+K CNHP L + E T D++ SGK+ VL
Sbjct: 456 LRKCCNHPYLFDGA--EPGPPYTTDEH----------------------IVSNSGKMVVL 491
Query: 648 SKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFN 707
KLLA + E +V++ S T+ L+IL++ C GY Y RLDGQTP +R++ ++ FN
Sbjct: 492 DKLLAKLKE--QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFN 549
Query: 708 SQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYR 767
+ +SS FIF+LS++AGG+G+NL +ILYD DWNP D+QAM R R GQK PV ++R
Sbjct: 550 APNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFR 609
Query: 768 LLTTGTIEEKIYQRQISKQGLCGAVV 793
L+T T+EE+I +R K L V+
Sbjct: 610 LITDNTVEERIVERAEIKLRLDSIVI 635
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 255 bits (651), Expect = 1e-67
Identities = 175/518 (33%), Positives = 266/518 (51%), Gaps = 73/518 (14%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQ----CQGPYGG 351
LR +Q G+ +L + + NG G ILADEMGLGKTLQ I+L+ L+ GP+
Sbjct: 183 LRDYQIRGLNWL----ISLYENGVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPH-- 235
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIF----YSVLI 407
+++ P S ++NW EF++W+ S R+ F D+D + FI+ + V +
Sbjct: 236 -------MVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAA-FIRDEMMPGEWDVCV 287
Query: 408 ISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDL 467
SYEM+++ K + L+ DE HR+KN K + + R++LTGTP+QN+L
Sbjct: 288 TSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNL 347
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFI 527
E +AL++F+ P + S + ++ L +++L ER A L F+
Sbjct: 348 HELWALLNFLLPDVFNSADDFDSWFDTKNCLG--------DQKLVERLHAVLK----PFL 395
Query: 528 LRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGA 587
LRR + + K LPPK E ++ +Q E Y K+L + G ++ L +
Sbjct: 396 LRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQ 455
Query: 588 LKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVL 647
L+K CNHP L + E T D++ SGK+ VL
Sbjct: 456 LRKCCNHPYLFDGA--EPGPPYTTDEH----------------------IVSNSGKMVVL 491
Query: 648 SKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ------- 700
KLLA + E +V++ S T+ L+IL++ C GY Y RLDGQTP +R+
Sbjct: 492 DKLLAKLKE--QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVE 549
Query: 701 -----QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVW 755
+ ++ FN+ +SS FIF+LS++AGG+G+NL +ILYD DWNP D+QAM R
Sbjct: 550 FLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAH 609
Query: 756 RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVV 793
R GQK PV ++RL+T T+EE+I +R K L V+
Sbjct: 610 RIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 647
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 252 bits (644), Expect = 1e-66
Identities = 190/601 (31%), Positives = 298/601 (49%), Gaps = 78/601 (12%)
Query: 290 PYLVY-HLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLI-------- 340
PY + +LR +Q+EG FLY G ++G G IL D+MGLGKT+Q IS +
Sbjct: 127 PYTINRYLRDYQREGTRFLY----GHYIHGG-GCILGDDMGLGKTVQVISFLAAVLHKKG 181
Query: 341 -----------WTLQCQGPYGGKPVIKKT-LIVTPGSLVNNWKKEFQKWLGSERIKIFTV 388
+ L+ KK LIV P S++ NWK E W G R+ +
Sbjct: 182 TREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHG 240
Query: 389 DQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALI 448
++ +K + + +YE L LD++ ++++ +I DE HR+KN + T +
Sbjct: 241 NRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMK 300
Query: 449 SLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEE 508
+L C RI LTGT +QN+++E + ++D+ PG+LGS + ++K + +P+ + +A++ E
Sbjct: 301 ALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRE 360
Query: 509 KELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV 568
G + L + LRRT+ +I LP K + +V+C Q +Y+ +L ++ V
Sbjct: 361 LATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 420
Query: 569 RFCLQ-----------------------GLLENSPHLICIGALKKLCNHPCLLFNSIKEK 605
LQ G + +L + L+K+ NH LL
Sbjct: 421 TLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL------- 473
Query: 606 ECSSTCDKNEE--KSLYKGLLSVFPADYN-------PLLFTEKESGKLQVLSKLLAVIHE 656
+ +ST + E K + + S FP L K SGK++VL +LL H
Sbjct: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLN--HC 531
Query: 657 LRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIF 716
+ +KV+L S T+ L++LQ+ C G Y RLDG T +R +IV FNS I
Sbjct: 532 RKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNIC 590
Query: 717 LLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEE 776
L+S+ AGG+GLN +G + ++L+D WNPA D+QA+ R +R GQ V + RL++ GT+EE
Sbjct: 591 LVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEE 650
Query: 777 KIYQRQISKQGLCGAVV---DLTKTSEHIQFSVEE------LKNLFTLHESSDCVTHDLL 827
+Y RQI KQ L VV + + E +Q S E + NLF C+T D+L
Sbjct: 651 IMYLRQIYKQQLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRSQGSCLTKDIL 710
Query: 828 D 828
+
Sbjct: 711 E 711
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 243 bits (620), Expect = 6e-64
Identities = 161/506 (31%), Positives = 257/506 (50%), Gaps = 61/506 (12%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQ----CQGPYGG 351
LR +Q G+ +L + + NG G ILADEMGLGKTLQ ISL+ ++ GP+
Sbjct: 180 LRDYQVRGLNWL----ISLYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPH-- 232
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIF----YSVLI 407
+++ P S ++NW EF++W+ + R D++ + F++ + + V +
Sbjct: 233 -------MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAA-FVRDVLLPGEWDVCV 284
Query: 408 ISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDL 467
SYEML++ K + L+ DE HR+KN K + + R++LTGTP+QN+L
Sbjct: 285 TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 344
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFI 527
E ++L++F+ P + S + ++ L +++L ER L + F+
Sbjct: 345 HELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DQKLVER----LHMVLRPFL 392
Query: 528 LRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGA 587
LRR + + K LPPK E ++ +Q E Y ++L + G ++ L +
Sbjct: 393 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQ 452
Query: 588 LKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVL 647
L+K CNHP LF+ + Y + SGK+ VL
Sbjct: 453 LRKCCNHP-YLFDGAEP-----------------------GPPYTTDMHLVTNSGKMVVL 488
Query: 648 SKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFN 707
KLL + E +V++ S T+ L+IL++ C Y Y RLDGQTP +RQ ++ +N
Sbjct: 489 DKLLPKLKE--QGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYN 546
Query: 708 SQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYR 767
+S+ F+F+LS++AGG+G+NL +ILYD DWNP D+QAM R R GQ V ++R
Sbjct: 547 EPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFR 606
Query: 768 LLTTGTIEEKIYQRQISKQGLCGAVV 793
+T T+EE+I +R K L V+
Sbjct: 607 FITDNTVEERIVERAEMKLRLDSIVI 632
>gi|168823443 RAD54-like 2 [Homo sapiens]
Length = 1467
Score = 234 bits (598), Expect = 2e-61
Identities = 183/658 (27%), Positives = 305/658 (46%), Gaps = 141/658 (21%)
Query: 285 DVVIDPYLVYHLRPHQKEGIIFLY----ECVMGMRMNGRCGAILADEMGLGKTLQCISLI 340
+V + P L ++PHQ GI FLY E + + + G ILA MGLGKTLQ IS I
Sbjct: 260 NVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFI 319
Query: 341 WTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSER---------------IKI 385
L P K L + P + + NW EF WL K+
Sbjct: 320 DVLFRHTP------AKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKV 373
Query: 386 FTVDQDHKVEEFIKSIFYS------VLIISYEM------------------------LLR 415
++ +HK + VL++ YEM ++
Sbjct: 374 HILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVII 433
Query: 416 SLDQI-KNIKF-------------DLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGT 461
LD+ + +F D++ICDEGHR+KN T+ AL ++ +R++LTG
Sbjct: 434 DLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGY 493
Query: 462 PIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTC 521
P+QN+L E++ ++DFV P LG+ + ++E PI+ + ++ ++ L R+ L
Sbjct: 494 PLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHS 553
Query: 522 LTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFC-LQGLLENSP 580
L F+ RR ++ +LP K ENV+ R +Q +LY + ++ R C G L +P
Sbjct: 554 LLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDR--FRDCGSSGWLGLNP 611
Query: 581 HLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPAD---------- 630
L K+ NHP +L+ +++++ ++ D + E+ G + P
Sbjct: 612 -LKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDST 670
Query: 631 ------------------YNPL---------------LFTEKESGKLQVLSKLLAVIHEL 657
+NP L T ++G L+ K++ + H +
Sbjct: 671 LASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLI 730
Query: 658 RPT----EKVVLVSNYTQTLNILQEVCKRH------------------GYAYTRLDGQTP 695
+ +K+++ S TL +++E + +Y RLDG TP
Sbjct: 731 EESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTP 790
Query: 696 ISQRQQIVDGFNSQHS-SFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRV 754
+R+++++ FN + + ++FLLS++AG +G+NLIG + ++++D WNP D QA+ RV
Sbjct: 791 AFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRV 850
Query: 755 WRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNL 812
+R GQK P +IYRL+ T+E+KIY RQISKQG+ VVD + + F+ +E++NL
Sbjct: 851 YRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD--DLNPMLNFTRKEVENL 906
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 230 bits (586), Expect = 5e-60
Identities = 175/548 (31%), Positives = 274/548 (50%), Gaps = 57/548 (10%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGG 351
L+ +Q +G+ +L N ILADEMGLGKT+Q I+LI L + GP+
Sbjct: 754 LKQYQIKGLEWLVSLY-----NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPF-- 806
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFI---KSIFYSVLII 408
LI+ P S ++NW EF KW S +K+ F+ +S ++VL+
Sbjct: 807 -------LIIVPLSTLSNWAYEFDKWAPSV-VKVSYKGSPAARRAFVPQLRSGKFNVLLT 858
Query: 409 SYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALIS-LSCEKRIILTGTPIQNDL 467
+YE +++ + I++ +I DEGHR+KN K T L + +R++LTGTP+QN L
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLF 526
E +AL++F+ P I S S++ + + P ++ E +EEE L RR L + F
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPF 975
Query: 527 ILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV-----RFCLQGLLENSPH 581
+LRR ++ + LP K+E V+ C ALQ LYR + V+ +G
Sbjct: 976 LLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTL 1035
Query: 582 LICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKES 641
+ I L+K+CNHP +F I+E +E G++ L + S
Sbjct: 1036 MNTIMQLRKICNHP-YMFQHIEESF-------SEHLGFTGGIVQG--------LDLYRAS 1079
Query: 642 GKLQVLSKLLAVIHELRPTE-KVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700
GK ++L ++L +LR T KV+L T + I+++ G+ Y RLDG T R
Sbjct: 1080 GKFELLDRILP---KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 701 QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
++ FN S +FIFLLS++AGG+GLNL +I++D DWNP D+QA R R GQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 761 YPVHIYRLLTTGTIEEKI-----YQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
V + RL T ++EEKI Y+ + ++ + + D +S + ++ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 816 HESSDCVT 823
ES C T
Sbjct: 1257 DESRHCST 1264
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 230 bits (586), Expect = 5e-60
Identities = 175/548 (31%), Positives = 274/548 (50%), Gaps = 57/548 (10%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGG 351
L+ +Q +G+ +L N ILADEMGLGKT+Q I+LI L + GP+
Sbjct: 754 LKQYQIKGLEWLVSLY-----NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPF-- 806
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFI---KSIFYSVLII 408
LI+ P S ++NW EF KW S +K+ F+ +S ++VL+
Sbjct: 807 -------LIIVPLSTLSNWAYEFDKWAPSV-VKVSYKGSPAARRAFVPQLRSGKFNVLLT 858
Query: 409 SYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALIS-LSCEKRIILTGTPIQNDL 467
+YE +++ + I++ +I DEGHR+KN K T L + +R++LTGTP+QN L
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLF 526
E +AL++F+ P I S S++ + + P ++ E +EEE L RR L + F
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPF 975
Query: 527 ILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV-----RFCLQGLLENSPH 581
+LRR ++ + LP K+E V+ C ALQ LYR + V+ +G
Sbjct: 976 LLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTL 1035
Query: 582 LICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKES 641
+ I L+K+CNHP +F I+E +E G++ L + S
Sbjct: 1036 MNTIMQLRKICNHP-YMFQHIEESF-------SEHLGFTGGIVQG--------LDLYRAS 1079
Query: 642 GKLQVLSKLLAVIHELRPTE-KVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700
GK ++L ++L +LR T KV+L T + I+++ G+ Y RLDG T R
Sbjct: 1080 GKFELLDRILP---KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 701 QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
++ FN S +FIFLLS++AGG+GLNL +I++D DWNP D+QA R R GQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 761 YPVHIYRLLTTGTIEEKI-----YQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
V + RL T ++EEKI Y+ + ++ + + D +S + ++ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 816 HESSDCVT 823
ES C T
Sbjct: 1257 DESRHCST 1264
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 230 bits (586), Expect = 5e-60
Identities = 175/548 (31%), Positives = 274/548 (50%), Gaps = 57/548 (10%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGG 351
L+ +Q +G+ +L N ILADEMGLGKT+Q I+LI L + GP+
Sbjct: 754 LKQYQIKGLEWLVSLY-----NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPF-- 806
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFI---KSIFYSVLII 408
LI+ P S ++NW EF KW S +K+ F+ +S ++VL+
Sbjct: 807 -------LIIVPLSTLSNWAYEFDKWAPSV-VKVSYKGSPAARRAFVPQLRSGKFNVLLT 858
Query: 409 SYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALIS-LSCEKRIILTGTPIQNDL 467
+YE +++ + I++ +I DEGHR+KN K T L + +R++LTGTP+QN L
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLF 526
E +AL++F+ P I S S++ + + P ++ E +EEE L RR L + F
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPF 975
Query: 527 ILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV-----RFCLQGLLENSPH 581
+LRR ++ + LP K+E V+ C ALQ LYR + V+ +G
Sbjct: 976 LLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTL 1035
Query: 582 LICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKES 641
+ I L+K+CNHP +F I+E +E G++ L + S
Sbjct: 1036 MNTIMQLRKICNHP-YMFQHIEESF-------SEHLGFTGGIVQG--------LDLYRAS 1079
Query: 642 GKLQVLSKLLAVIHELRPTE-KVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700
GK ++L ++L +LR T KV+L T + I+++ G+ Y RLDG T R
Sbjct: 1080 GKFELLDRILP---KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 701 QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
++ FN S +FIFLLS++AGG+GLNL +I++D DWNP D+QA R R GQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 761 YPVHIYRLLTTGTIEEKI-----YQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
V + RL T ++EEKI Y+ + ++ + + D +S + ++ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 816 HESSDCVT 823
ES C T
Sbjct: 1257 DESRHCST 1264
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 230 bits (586), Expect = 5e-60
Identities = 171/525 (32%), Positives = 278/525 (52%), Gaps = 63/525 (12%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355
L+P+QK G+ +L V +NG ILADEMGLGKT+Q I+ + L +G G
Sbjct: 497 LKPYQKVGLNWL-ALVHKHGLNG----ILADEMGLGKTIQAIAFLAYLYQEGNNGPH--- 548
Query: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHK--VEEFIKSIF--YSVLIISYE 411
LIV P S ++NW +E W + ++ + Q+ + + I S + Y+V++ +Y
Sbjct: 549 ---LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
Query: 412 MLLRSLDQ---IKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQ 468
+ S D + +K + I DEGH LKN L++++ R++LTGTP+QN+L
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 469 EFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFIL 528
E +L++FV P + S +S E + S + +++E+ + R A + FIL
Sbjct: 666 ELMSLLNFVMPHMFSSSTS-----EIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
Query: 529 RRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGAL 588
RR +E + K LPPK + + C Q +LY L N ++ + L +N+ + L
Sbjct: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNR--LKKSINNLEKNTEMCNVMMQL 778
Query: 589 KKLCNHPCL---LFNSIKEKECS-------STCDKNEEKSLYKGL--------------- 623
+K+ NHP L + + K KE S + C+ N + +++ +
Sbjct: 779 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPD-LIFEDMEVMTDFELHVLCKQY 837
Query: 624 --LSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCK 681
++ F D + +L +SGK +VL +L+ + + ++VVL S +T L+IL+ + K
Sbjct: 838 RHINNFQLDMDLIL----DSGKFRVLGCILSELKQ--KGDRVVLFSQFTMMLDILEVLLK 891
Query: 682 RHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDID 741
H + Y RLDG+T IS+R ++D FN+ F+FLLS+KAGG+G+NL + +IL+DID
Sbjct: 892 HHQHRYLRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHDID 950
Query: 742 WNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEE---KIYQRQI 783
NP D QA R R GQ V + +L++ GTIEE KI Q+++
Sbjct: 951 CNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKL 995
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 229 bits (585), Expect = 7e-60
Identities = 182/601 (30%), Positives = 290/601 (48%), Gaps = 63/601 (10%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGG 351
L+ +Q +G+ +L N ILADEMGLGKT+Q I+LI L + GP+
Sbjct: 754 LKQYQIKGLEWLVSLY-----NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPF-- 806
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFI---KSIFYSVLII 408
LI+ P S ++NW EF KW S +K+ F+ +S ++VL+
Sbjct: 807 -------LIIVPLSTLSNWAYEFDKWAPSV-VKVSYKGSPAARRAFVPQLRSGKFNVLLT 858
Query: 409 SYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALIS-LSCEKRIILTGTPIQNDL 467
+YE +++ + I++ +I DEGHR+KN K T L + +R++LTGTP+QN L
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLF 526
E +AL++F+ P I S S++ + + P ++ E +EEE L RR L + F
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPF 975
Query: 527 ILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV-----RFCLQGLLENSPH 581
+LRR ++ + LP K+E V+ C ALQ LYR + V+ +G
Sbjct: 976 LLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTL 1035
Query: 582 LICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKES 641
+ I L+K+CNHP +F I+E +E G++ L + S
Sbjct: 1036 MNTIMQLRKICNHP-YMFQHIEESF-------SEHLGFTGGIVQG--------LDLYRAS 1079
Query: 642 GKLQVLSKLLAVIHELRPTE-KVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700
GK ++L ++L +LR T KV+L T + I+++ G+ Y RLDG T R
Sbjct: 1080 GKFELLDRILP---KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 701 QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
++ FN S +FIFLLS++AGG+GLNL +I++D DWNP D+QA R R GQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 761 YPVHIYRLLTTGTIEEKI-----YQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
V + RL T ++EEKI Y+ + ++ + + D +S + ++ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILE---- 1252
Query: 816 HESSDCVTHDLLDCECTGEEVHTGDSLEKFIVSRDCQLGPHHQKSNSLKPLSM--SQLKQ 873
HE D ++ D E + + + + D ++ KP M +L
Sbjct: 1253 HEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPS 1312
Query: 874 W 874
W
Sbjct: 1313 W 1313
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 229 bits (585), Expect = 7e-60
Identities = 182/601 (30%), Positives = 290/601 (48%), Gaps = 63/601 (10%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGG 351
L+ +Q +G+ +L N ILADEMGLGKT+Q I+LI L + GP+
Sbjct: 754 LKQYQIKGLEWLVSLY-----NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPF-- 806
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFI---KSIFYSVLII 408
LI+ P S ++NW EF KW S +K+ F+ +S ++VL+
Sbjct: 807 -------LIIVPLSTLSNWAYEFDKWAPSV-VKVSYKGSPAARRAFVPQLRSGKFNVLLT 858
Query: 409 SYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALIS-LSCEKRIILTGTPIQNDL 467
+YE +++ + I++ +I DEGHR+KN K T L + +R++LTGTP+QN L
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLF 526
E +AL++F+ P I S S++ + + P ++ E +EEE L RR L + F
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPF 975
Query: 527 ILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV-----RFCLQGLLENSPH 581
+LRR ++ + LP K+E V+ C ALQ LYR + V+ +G
Sbjct: 976 LLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTL 1035
Query: 582 LICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKES 641
+ I L+K+CNHP +F I+E +E G++ L + S
Sbjct: 1036 MNTIMQLRKICNHP-YMFQHIEESF-------SEHLGFTGGIVQG--------LDLYRAS 1079
Query: 642 GKLQVLSKLLAVIHELRPTE-KVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700
GK ++L ++L +LR T KV+L T + I+++ G+ Y RLDG T R
Sbjct: 1080 GKFELLDRILP---KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 701 QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
++ FN S +FIFLLS++AGG+GLNL +I++D DWNP D+QA R R GQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 761 YPVHIYRLLTTGTIEEKI-----YQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
V + RL T ++EEKI Y+ + ++ + + D +S + ++ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILE---- 1252
Query: 816 HESSDCVTHDLLDCECTGEEVHTGDSLEKFIVSRDCQLGPHHQKSNSLKPLSM--SQLKQ 873
HE D ++ D E + + + + D ++ KP M +L
Sbjct: 1253 HEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPS 1312
Query: 874 W 874
W
Sbjct: 1313 W 1313
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 229 bits (585), Expect = 7e-60
Identities = 182/601 (30%), Positives = 290/601 (48%), Gaps = 63/601 (10%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGG 351
L+ +Q +G+ +L N ILADEMGLGKT+Q I+LI L + GP+
Sbjct: 754 LKQYQIKGLEWLVSLY-----NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPF-- 806
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFI---KSIFYSVLII 408
LI+ P S ++NW EF KW S +K+ F+ +S ++VL+
Sbjct: 807 -------LIIVPLSTLSNWAYEFDKWAPSV-VKVSYKGSPAARRAFVPQLRSGKFNVLLT 858
Query: 409 SYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALIS-LSCEKRIILTGTPIQNDL 467
+YE +++ + I++ +I DEGHR+KN K T L + +R++LTGTP+QN L
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLF 526
E +AL++F+ P I S S++ + + P ++ E +EEE L RR L + F
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPF 975
Query: 527 ILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV-----RFCLQGLLENSPH 581
+LRR ++ + LP K+E V+ C ALQ LYR + V+ +G
Sbjct: 976 LLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTL 1035
Query: 582 LICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKES 641
+ I L+K+CNHP +F I+E +E G++ L + S
Sbjct: 1036 MNTIMQLRKICNHP-YMFQHIEESF-------SEHLGFTGGIVQG--------LDLYRAS 1079
Query: 642 GKLQVLSKLLAVIHELRPTE-KVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700
GK ++L ++L +LR T KV+L T + I+++ G+ Y RLDG T R
Sbjct: 1080 GKFELLDRILP---KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 701 QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
++ FN S +FIFLLS++AGG+GLNL +I++D DWNP D+QA R R GQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 761 YPVHIYRLLTTGTIEEKI-----YQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
V + RL T ++EEKI Y+ + ++ + + D +S + ++ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILE---- 1252
Query: 816 HESSDCVTHDLLDCECTGEEVHTGDSLEKFIVSRDCQLGPHHQKSNSLKPLSM--SQLKQ 873
HE D ++ D E + + + + D ++ KP M +L
Sbjct: 1253 HEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPS 1312
Query: 874 W 874
W
Sbjct: 1313 W 1313
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 229 bits (585), Expect = 7e-60
Identities = 182/601 (30%), Positives = 290/601 (48%), Gaps = 63/601 (10%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGG 351
L+ +Q +G+ +L N ILADEMGLGKT+Q I+LI L + GP+
Sbjct: 754 LKQYQIKGLEWLVSLY-----NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPF-- 806
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFI---KSIFYSVLII 408
LI+ P S ++NW EF KW S +K+ F+ +S ++VL+
Sbjct: 807 -------LIIVPLSTLSNWAYEFDKWAPSV-VKVSYKGSPAARRAFVPQLRSGKFNVLLT 858
Query: 409 SYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALIS-LSCEKRIILTGTPIQNDL 467
+YE +++ + I++ +I DEGHR+KN K T L + +R++LTGTP+QN L
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLF 526
E +AL++F+ P I S S++ + + P ++ E +EEE L RR L + F
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPF 975
Query: 527 ILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV-----RFCLQGLLENSPH 581
+LRR ++ + LP K+E V+ C ALQ LYR + V+ +G
Sbjct: 976 LLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTL 1035
Query: 582 LICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKES 641
+ I L+K+CNHP +F I+E +E G++ L + S
Sbjct: 1036 MNTIMQLRKICNHP-YMFQHIEESF-------SEHLGFTGGIVQG--------LDLYRAS 1079
Query: 642 GKLQVLSKLLAVIHELRPTE-KVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700
GK ++L ++L +LR T KV+L T + I+++ G+ Y RLDG T R
Sbjct: 1080 GKFELLDRILP---KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 701 QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
++ FN S +FIFLLS++AGG+GLNL +I++D DWNP D+QA R R GQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 761 YPVHIYRLLTTGTIEEKI-----YQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
V + RL T ++EEKI Y+ + ++ + + D +S + ++ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILE---- 1252
Query: 816 HESSDCVTHDLLDCECTGEEVHTGDSLEKFIVSRDCQLGPHHQKSNSLKPLSM--SQLKQ 873
HE D ++ D E + + + + D ++ KP M +L
Sbjct: 1253 HEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPS 1312
Query: 874 W 874
W
Sbjct: 1313 W 1313
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 228 bits (582), Expect = 1e-59
Identities = 172/557 (30%), Positives = 270/557 (48%), Gaps = 59/557 (10%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGP--YGGKP 353
LR +Q++G+ +L + +++G IL D+MGLGKTLQ I ++ C Y
Sbjct: 1266 LRKYQQDGVNWL-AFLNKYKLHG----ILCDDMGLGKTLQSICILAGDHCHRAQEYARSK 1320
Query: 354 VIK----KTLIVTPGSLVNNWKKEFQKWLGSERIKI--FTVDQDHKVEEFIKSIFYSVLI 407
+ + +L+V P +L +W E K+ E + +T ++ + +++++
Sbjct: 1321 LAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIV 1380
Query: 408 ISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDL 467
SY+++ +D +NIKF+ I DEGH +KN K + A+ L+ RIIL+GTPIQN++
Sbjct: 1381 ASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNV 1440
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFI 527
E ++L DF+ PG LG+ + Y +PI+ SR+ +S E+E G L F+
Sbjct: 1441 LELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFL 1500
Query: 528 LRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNS-------QVVRFCLQGLLENSP 580
LRR +E + + LPPKI +C LQ++LY S + V P
Sbjct: 1501 LRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKP 1560
Query: 581 HLICIG-------ALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNP 633
L G L+KLCNHP L+ + E +T +K A N
Sbjct: 1561 KLKATGHVFQALQYLRKLCNHPALVLTP-QHPEFKTTAEK--------------LAVQNS 1605
Query: 634 LLFTEKESGKLQVLSKLL------------AVIHELRPTEKVVLVSNYTQTLNILQ-EVC 680
L + + KL L +LL + + ++++ L+I++ ++
Sbjct: 1606 SLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLL 1665
Query: 681 KRH--GYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILY 738
K H Y RLDG P QR IV FN+ S + LL++ GG+GLNL G ++
Sbjct: 1666 KPHLPSVTYLRLDGSIPPGQRHSIVSRFNND-PSIDVLLLTTHVGGLGLNLTGADTVVFV 1724
Query: 739 DIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKT 798
+ DWNP D+QAM R R GQK V++YRL+T GT+EEKI Q K + V+ +
Sbjct: 1725 EHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENS 1784
Query: 799 SEHIQFSVEELKNLFTL 815
S ++L +LFTL
Sbjct: 1785 SLQ-SMGTDQLLDLFTL 1800
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 227 bits (579), Expect = 3e-59
Identities = 161/532 (30%), Positives = 264/532 (49%), Gaps = 62/532 (11%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355
LR +Q EG+ +L MR ILADEMGLGKT+Q I+ ++ + +G +G
Sbjct: 968 LREYQLEGVNWLLFNWYNMR-----NCILADEMGLGKTIQSITFLYEIYLKGIHG----- 1017
Query: 356 KKTLIVTPGSLVNNWKKEFQKWL--------GSER----IKIFTVDQDHKVEEFIKSIF- 402
L++ P S + NW++EF+ W GS+ I+++ + IK +
Sbjct: 1018 -PFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYK 1076
Query: 403 YSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTP 462
+ +I ++EM+L +++NI + ++ DE HRLKN K L + E +++LTGTP
Sbjct: 1077 FHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTP 1136
Query: 463 IQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAE---- 518
+QN ++E F+L+ F+ P SR PS + +E G+ + E
Sbjct: 1137 LQNTVEELFSLLHFLEP-------------------SRFPSETTFMQEFGDLKTEEQVQK 1177
Query: 519 LTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLEN 578
L + +LRR +E + K L PK E ++ +Q + YR +L G N
Sbjct: 1178 LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQAN 1237
Query: 579 SPHLI-CIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFT 637
P+L+ + L+K CNHP L+ N +EK + + +S L ++ A
Sbjct: 1238 VPNLLNTMMELRKCCNHPYLI-NGAEEKILEEFKETHNAESPDFQLQAMIQA-------- 1288
Query: 638 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 697
+GKL ++ KLL + +V++ S + L+IL++ + Y Y R+DG+ +
Sbjct: 1289 ---AGKLVLIDKLLPKLKA--GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGN 1343
Query: 698 QRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRD 757
RQ +D F+ S F+FLL ++AGG+G+NL I++D DWNP D+QA +R R
Sbjct: 1344 LRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRI 1403
Query: 758 GQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEEL 809
GQ V IYRL+T + E +++ + K GL AV+ E+ V++L
Sbjct: 1404 GQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQL 1455
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 227 bits (579), Expect = 3e-59
Identities = 171/527 (32%), Positives = 278/527 (52%), Gaps = 65/527 (12%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355
L+P+QK G+ +L V +NG ILADEMGLGKT+Q I+ + L +G G
Sbjct: 497 LKPYQKVGLNWL-ALVHKHGLNG----ILADEMGLGKTIQAIAFLAYLYQEGNNGPH--- 548
Query: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHK--VEEFIKSIF--YSVLIISYE 411
LIV P S ++NW +E W + ++ + Q+ + + I S + Y+V++ +Y
Sbjct: 549 ---LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
Query: 412 MLLRSLDQ---IKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQ 468
+ S D + +K + I DEGH LKN L++++ R++LTGTP+QN+L
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 469 EFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFIL 528
E +L++FV P + S +S E + S + +++E+ + R A + FIL
Sbjct: 666 ELMSLLNFVMPHMFSSSTS-----EIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
Query: 529 RRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLIC--IG 586
RR +E + K LPPK + + C Q +LY L N ++ + L+ +C +
Sbjct: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNR--LKKSINNLVTEKNTEMCNVMM 778
Query: 587 ALKKLCNHPCL---LFNSIKEKECS-------STCDKNEEKSLYKGL------------- 623
L+K+ NHP L + + K KE S + C+ N + +++ +
Sbjct: 779 QLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPD-LIFEDMEVMTDFELHVLCK 837
Query: 624 ----LSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEV 679
++ F D + +L +SGK +VL +L+ + + ++VVL S +T L+IL+ +
Sbjct: 838 QYRHINNFQLDMDLIL----DSGKFRVLGCILSELKQ--KGDRVVLFSQFTMMLDILEVL 891
Query: 680 CKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYD 739
K H + Y RLDG+T IS+R ++D FN+ F+FLLS+KAGG+G+NL + +IL+D
Sbjct: 892 LKHHQHRYLRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHD 950
Query: 740 IDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEE---KIYQRQI 783
ID NP D QA R R GQ V + +L++ GTIEE KI Q+++
Sbjct: 951 IDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKL 997
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 227 bits (579), Expect = 3e-59
Identities = 171/527 (32%), Positives = 278/527 (52%), Gaps = 65/527 (12%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355
L+P+QK G+ +L V +NG ILADEMGLGKT+Q I+ + L +G G
Sbjct: 497 LKPYQKVGLNWL-ALVHKHGLNG----ILADEMGLGKTIQAIAFLAYLYQEGNNGPH--- 548
Query: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHK--VEEFIKSIF--YSVLIISYE 411
LIV P S ++NW +E W + ++ + Q+ + + I S + Y+V++ +Y
Sbjct: 549 ---LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
Query: 412 MLLRSLDQ---IKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQ 468
+ S D + +K + I DEGH LKN L++++ R++LTGTP+QN+L
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 469 EFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFIL 528
E +L++FV P + S +S E + S + +++E+ + R A + FIL
Sbjct: 666 ELMSLLNFVMPHMFSSSTS-----EIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
Query: 529 RRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLIC--IG 586
RR +E + K LPPK + + C Q +LY L N ++ + L+ +C +
Sbjct: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNR--LKKSINNLVTEKNTEMCNVMM 778
Query: 587 ALKKLCNHPCL---LFNSIKEKECS-------STCDKNEEKSLYKGL------------- 623
L+K+ NHP L + + K KE S + C+ N + +++ +
Sbjct: 779 QLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPD-LIFEDMEVMTDFELHVLCK 837
Query: 624 ----LSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEV 679
++ F D + +L +SGK +VL +L+ + + ++VVL S +T L+IL+ +
Sbjct: 838 QYRHINNFQLDMDLIL----DSGKFRVLGCILSELKQ--KGDRVVLFSQFTMMLDILEVL 891
Query: 680 CKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYD 739
K H + Y RLDG+T IS+R ++D FN+ F+FLLS+KAGG+G+NL + +IL+D
Sbjct: 892 LKHHQHRYLRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHD 950
Query: 740 IDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEE---KIYQRQI 783
ID NP D QA R R GQ V + +L++ GTIEE KI Q+++
Sbjct: 951 IDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKL 997
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 224 bits (572), Expect = 2e-58
Identities = 168/505 (33%), Positives = 260/505 (51%), Gaps = 53/505 (10%)
Query: 317 NGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGGKPVIKKTLIVTPGSLVNNWKK 372
N ILADEMGLGKT+Q I+LI L + GPY LI+ P S ++NW
Sbjct: 740 NNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPY---------LIIVPLSTLSNWTY 790
Query: 373 EFQKWLGSERIKIF---TVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLI 429
EF KW S +KI T + ++S ++VL+ +YE +++ + I++ +I
Sbjct: 791 EFDKWAPSV-VKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMI 849
Query: 430 CDEGHRLKNSAIKTTTALIS-LSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSY 488
DEGHR+KN K T L + +RI+LTGTP+QN L E +AL++F+ P I S S++
Sbjct: 850 VDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTF 909
Query: 489 RKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVV 547
+ + P ++ E +EEE L RR L + F+LRR ++ + LP K+E V+
Sbjct: 910 EQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRPFLLRRLKKEVESQLPEKVEYVI 966
Query: 548 FCRPGALQIELYRKLLNSQVV-----RFCLQGLLENSPHLICIGALKKLCNHPCLLFNSI 602
C ALQ LYR + ++ +G + I L+K+CNHP +F I
Sbjct: 967 KCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHP-YMFQHI 1025
Query: 603 KEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTE- 661
+E E G+++ L+ + SGK ++L ++L +LR T
Sbjct: 1026 EESFA-------EHLGYSNGVIN------GAELY--RASGKFELLDRILP---KLRATNH 1067
Query: 662 KVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSK 721
+V+L T + I+++ + Y RLDG T R ++ FN S +FIFLLS++
Sbjct: 1068 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1127
Query: 722 AGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKI--- 778
AGG+GLNL ++++D DWNP D+QA R R GQ+ V + RL T ++EEKI
Sbjct: 1128 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1187
Query: 779 --YQRQISKQGLCGAVVDLTKTSEH 801
Y+ + ++ + + D K+S H
Sbjct: 1188 AKYKLNVDQKVIQAGMFD-QKSSSH 1211
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 224 bits (572), Expect = 2e-58
Identities = 168/505 (33%), Positives = 260/505 (51%), Gaps = 53/505 (10%)
Query: 317 NGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGGKPVIKKTLIVTPGSLVNNWKK 372
N ILADEMGLGKT+Q I+LI L + GPY LI+ P S ++NW
Sbjct: 740 NNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPY---------LIIVPLSTLSNWTY 790
Query: 373 EFQKWLGSERIKIF---TVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLI 429
EF KW S +KI T + ++S ++VL+ +YE +++ + I++ +I
Sbjct: 791 EFDKWAPSV-VKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMI 849
Query: 430 CDEGHRLKNSAIKTTTALIS-LSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSY 488
DEGHR+KN K T L + +RI+LTGTP+QN L E +AL++F+ P I S S++
Sbjct: 850 VDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTF 909
Query: 489 RKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVV 547
+ + P ++ E +EEE L RR L + F+LRR ++ + LP K+E V+
Sbjct: 910 EQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRPFLLRRLKKEVESQLPEKVEYVI 966
Query: 548 FCRPGALQIELYRKLLNSQVV-----RFCLQGLLENSPHLICIGALKKLCNHPCLLFNSI 602
C ALQ LYR + ++ +G + I L+K+CNHP +F I
Sbjct: 967 KCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHP-YMFQHI 1025
Query: 603 KEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTE- 661
+E E G+++ L+ + SGK ++L ++L +LR T
Sbjct: 1026 EESFA-------EHLGYSNGVIN------GAELY--RASGKFELLDRILP---KLRATNH 1067
Query: 662 KVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSK 721
+V+L T + I+++ + Y RLDG T R ++ FN S +FIFLLS++
Sbjct: 1068 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1127
Query: 722 AGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKI--- 778
AGG+GLNL ++++D DWNP D+QA R R GQ+ V + RL T ++EEKI
Sbjct: 1128 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1187
Query: 779 --YQRQISKQGLCGAVVDLTKTSEH 801
Y+ + ++ + + D K+S H
Sbjct: 1188 AKYKLNVDQKVIQAGMFD-QKSSSH 1211
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 224 bits (571), Expect = 3e-58
Identities = 162/540 (30%), Positives = 267/540 (49%), Gaps = 67/540 (12%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355
LR +Q EG+ +L R ILADEMGLGKT+Q I+ + + G +G
Sbjct: 532 LREYQLEGVNWLL-----FNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHG----- 581
Query: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERI----KIFTVDQDHKVEEFIK---------SIF 402
L++ P S + NW++EF W I + + + E + K +
Sbjct: 582 -PFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYK 640
Query: 403 YSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTP 462
+ LI ++EM+L +++ I++ +I DE HRLKN K +L + E +++LTGTP
Sbjct: 641 FDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTP 700
Query: 463 IQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAE---- 518
+QN ++E F+L+ F+ P S+ PS SE K+ G+ + E
Sbjct: 701 LQNTVEELFSLLHFLEP-------------------SQFPSESEFLKDFGDLKTEEQVQK 741
Query: 519 LTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLEN 578
L + +LRR +E + K L PK E ++ +Q + YR +L N
Sbjct: 742 LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTN 801
Query: 579 SPHLI-CIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFT 637
P+L+ + L+K CNHP L+ N +EK + ++ + P D++ L
Sbjct: 802 MPNLLNTMMELRKCCNHPYLI-NGAEEKILTE----------FREACHIIPHDFH-LQAM 849
Query: 638 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 697
+ +GKL ++ KLL + KV++ S + L+IL++ + Y Y R+DG+ +
Sbjct: 850 VRSAGKLVLIDKLLPKLKA--GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGN 907
Query: 698 QRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRD 757
RQ +D F+ S F+FLL ++AGG+G+NL I++D DWNP D+QA +R R
Sbjct: 908 LRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRI 967
Query: 758 GQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVV-DLTKTSEHI----QFSVEELKNL 812
GQ V +YRL+T + E +++ + K GL AV+ ++ +I QFS +E+++L
Sbjct: 968 GQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1027
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 224 bits (570), Expect = 4e-58
Identities = 166/516 (32%), Positives = 249/516 (48%), Gaps = 65/516 (12%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL----QCQGPYGG 351
LR +Q EG+ +L ILADEMGLGKT+Q IS + L Q GP+
Sbjct: 484 LRDYQLEGLNWLAHSWCKNN-----SVILADEMGLGKTIQTISFLSYLFHQHQLYGPF-- 536
Query: 352 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIF--------TVDQDHKVEEFIKSIFY 403
LIV P S + +W++EF+ W + ++ T+ + + K + +
Sbjct: 537 -------LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKF 589
Query: 404 SVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPI 463
+ LI +YE+LL+ + +I + L DE HRLKN LI R+++TGTP+
Sbjct: 590 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 649
Query: 464 QNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLT 523
QN L+E ++L+ F+ P + + +EE RE K L
Sbjct: 650 QNSLKELWSLLHFIMP----EKFEFWEDFEEDHGKGRENGYQSLHKVLEP---------- 695
Query: 524 GLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLI 583
F+LRR ++ + K LP K+E ++ ALQ + Y+ +L S L
Sbjct: 696 --FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLN 753
Query: 584 CIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGK 643
+ LKK CNH C L +E NE ++ + LLS+ + SGK
Sbjct: 754 IVMELKKCCNH-CYLIKPPEE---------NERENGQEILLSLI-----------RSSGK 792
Query: 644 LQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIV 703
L +L KLL + E +V++ S + L+IL E Y + RLDG R+Q +
Sbjct: 793 LILLDKLLTRLRERG--NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQAL 850
Query: 704 DGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPV 763
D FN+ S F FLLS++AGG+G+NL ++++D DWNP D+QA +R R GQK V
Sbjct: 851 DHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQV 910
Query: 764 HIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTS 799
+IYRL+T GT+EE+I +R K L V+ T+
Sbjct: 911 NIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTT 946
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 217 bits (553), Expect = 3e-56
Identities = 155/522 (29%), Positives = 253/522 (48%), Gaps = 74/522 (14%)
Query: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355
LR +Q EG+ +L R ILADEMGLGKT+Q I+ + + +G +G
Sbjct: 461 LREYQLEGMNWLL-----FNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHG----- 510
Query: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIF------------- 402
LI+ P S + NW++EF+ W I ++ + + ++
Sbjct: 511 -PFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFK 569
Query: 403 YSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTP 462
+ V+I ++EM+L ++K I + +I DE HRLKN K L ++ E +++LTGTP
Sbjct: 570 FHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 629
Query: 463 IQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAE---- 518
+QN ++E F+L++F+ P S+ PS + +E G+ + E
Sbjct: 630 LQNSVEELFSLLNFLEP-------------------SQFPSETAFLEEFGDLKTEEQVKK 670
Query: 519 LTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLEN 578
L + +LRR ++ + K L PK E ++ +Q + YR +L N
Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHN 730
Query: 579 SPHLI-CIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNP---- 633
P+LI + L+K CNHP L+ N +EK +L F ++P
Sbjct: 731 MPNLINTMMELRKCCNHPYLI-NGAEEK-----------------ILEDFRKTHSPDAPD 772
Query: 634 --LLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLD 691
L + +GKL ++ KLL + + KV++ S + L+IL++ + Y Y R+D
Sbjct: 773 FQLQAMIQAAGKLVLIDKLLPKL--IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERID 830
Query: 692 GQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAM 751
G+ + RQ +D F S F+FLL ++AGG+G+NL I++D DWNP D+QA
Sbjct: 831 GRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQ 890
Query: 752 SRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVV 793
+R R GQ V +YRL+T + E +++ + K GL AV+
Sbjct: 891 ARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVL 932
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 217 bits (553), Expect = 3e-56
Identities = 156/489 (31%), Positives = 236/489 (48%), Gaps = 60/489 (12%)
Query: 323 ILADEMGLGKTLQCISLIWTL----QCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWL 378
ILADEMGLGKT+Q IS + L Q GP+ L+V P S + +W++E Q W
Sbjct: 503 ILADEMGLGKTIQTISFLNYLFHEHQLYGPF---------LLVVPLSTLTSWQREIQTWA 553
Query: 379 GSERIKIFTVDQDHK--------VEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLIC 430
++ D + + K + +++L+ +YE+LL+ + + + +
Sbjct: 554 SQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGV 613
Query: 431 DEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRK 490
DE HRLKN LI R+++TGTP+QN L+E ++L+ F+ P S +
Sbjct: 614 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDF-- 671
Query: 491 IYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCR 550
EE RE + KEL F+LRR ++ + K LP K+E ++
Sbjct: 672 --EEEHGKGREYGYASLHKELEP------------FLLRRVKKDVEKSLPAKVEQILRME 717
Query: 551 PGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSST 610
ALQ + Y+ +L S L + LKK CNH C L IK + +
Sbjct: 718 MSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNH-CYL---IKPPDNNEF 773
Query: 611 CDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYT 670
+K E L + SGKL +L KLL + E +V++ S
Sbjct: 774 YNKQEA-----------------LQHLIRSSGKLILLDKLLIRLRERG--NRVLIFSQMV 814
Query: 671 QTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLI 730
+ L+IL E K + + RLDG R+Q +D FN++ S F FLLS++AGG+G+NL
Sbjct: 815 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 874
Query: 731 GGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCG 790
++++D DWNP D+QA +R R GQK V+IYRL+T G++EE I +R K L
Sbjct: 875 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDH 934
Query: 791 AVVDLTKTS 799
V+ T+
Sbjct: 935 LVIQRMDTT 943
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 217 bits (552), Expect = 5e-56
Identities = 184/635 (28%), Positives = 291/635 (45%), Gaps = 106/635 (16%)
Query: 295 HLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLI----WTLQCQGPYG 350
HLR +Q EG+ +L + R + + G IL DEMGLGKT Q I+L L +GP+
Sbjct: 45 HLRSYQLEGVNWLAQ-----RFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPF- 98
Query: 351 GKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKV---EEFIKSIFYSVLI 407
LI+ P S+++NWK+E Q++ + D++ + ++ + + VL+
Sbjct: 99 --------LILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLL 150
Query: 408 ISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDL 467
+YE+ L+ +K+ + +L+ DE HRLKN + L S ++LTGTPIQN L
Sbjct: 151 TTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSL 210
Query: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFI 527
QE ++L+ FV P + EE + E+E E A+EL L F+
Sbjct: 211 QELYSLLSFVEPDLFSK--------EEVGDFIQRYQDIEKESE----SASELHKLLQPFL 258
Query: 528 LRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLL--------NSQVVRFCLQGLLENS 579
LRR + + LP K E V++ ALQ + Y+ +L N + LQ +L
Sbjct: 259 LRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILSQ- 317
Query: 580 PHLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEK 639
L+K +HP LF+ ++ P + +
Sbjct: 318 --------LRKCVDHP-YLFDGVE------------------------PEPFEVGDHLTE 344
Query: 640 ESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQR 699
SGKL +L KLLA ++ +V+L S TQ L+ILQ+ GY+Y R+DG +R
Sbjct: 345 ASGKLHLLDKLLAFLYS--GGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEER 402
Query: 700 QQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQ 759
+ F Q F+FLLS++AGGVG+NL +I D D+NP D+QA +R R GQ
Sbjct: 403 HLAIKNFGQQ--PIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQ 460
Query: 760 KYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVD---------------LTKTSEHIQF 804
V + RL+ T+EE +Y++ SK L +++ + SE ++F
Sbjct: 461 NKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADLQLSEILKF 520
Query: 805 SVEELKNLFTLHESSDCVTHDLLDCECTGEEVHTGDSLEKFIV-----SRDCQLGPHHQK 859
+++L +S+ T D +D E E G + + SRD + G +H
Sbjct: 521 GLDKLL-------ASEGSTMDEIDLESILGETKDGQWVSDALPAAEGGSRDQEEGKNHMY 573
Query: 860 SNSLKPLSMSQLKQWKHFSGDHLNLTDPFLERITE 894
K S K+ + +NL LE+ ++
Sbjct: 574 LFEGKDYSKEPSKEDRKSFEQLVNLQKTLLEKASQ 608
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 216 bits (551), Expect = 6e-56
Identities = 165/540 (30%), Positives = 260/540 (48%), Gaps = 70/540 (12%)
Query: 296 LRPHQKEGIIFL-YECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPV 354
L P+Q EG+ +L + G ILADEMGLGKT+Q +++L +G G
Sbjct: 726 LHPYQMEGLNWLRFSWAQGT------DTILADEMGLGKTVQTAVFLYSLYKEGHSKGP-- 777
Query: 355 IKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKV----EEFI------------ 398
L+ P S + NW++EF+ W + + D+D + EF
Sbjct: 778 ---FLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 834
Query: 399 ------KSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSC 452
S+ + VL+ SYE++ + + +I + LI DE HRLKN+ K L S
Sbjct: 835 SRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSL 894
Query: 453 EKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELG 512
+ +++LTGTP+QN+L+E F L++F+ P +L + EE +++E ++ K+L
Sbjct: 895 QHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGF---LEEFADIAKE----DQIKKLH 947
Query: 513 ERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCL 572
+ + G +LRR + + K +P K E +V +Q + Y+ +L
Sbjct: 948 D--------MLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNA 999
Query: 573 QGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYN 632
+G L + LKK CNHP L + E +Y G +
Sbjct: 1000 RGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAP-------KMPNGMYDGSALI------ 1046
Query: 633 PLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDG 692
+ SGKL +L K+L + E +V++ S T+ L++L++ + GY Y R+DG
Sbjct: 1047 ------RASGKLLLLQKMLKNLKE--GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1098
Query: 693 QTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMS 752
+ RQ+ +D FN+ + F FLLS++AGG+G+NL +I+YD DWNP DIQA S
Sbjct: 1099 GITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFS 1158
Query: 753 RVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNL 812
R R GQ V IYR +T ++EE+I Q K L VV S+ S +EL ++
Sbjct: 1159 RAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDI 1218
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,018,672
Number of Sequences: 37866
Number of extensions: 1747880
Number of successful extensions: 4035
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3713
Number of HSP's gapped (non-prelim): 107
length of query: 910
length of database: 18,247,518
effective HSP length: 111
effective length of query: 799
effective length of database: 14,044,392
effective search space: 11221469208
effective search space used: 11221469208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.