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Search of human proteins with 68800128
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b
[Homo sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H... 505 e-143
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... 492 e-139
gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary... 419 e-118
gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary... 416 e-117
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H... 354 4e-98
gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 275 2e-74
gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 187 7e-48
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 141 6e-34
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 45 7e-05
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 44 1e-04
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 44 1e-04
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 44 1e-04
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 44 1e-04
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 44 1e-04
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 44 2e-04
gi|224549005 RNA binding motif protein 17 [Homo sapiens] 42 4e-04
gi|14249678 RNA binding motif protein 17 [Homo sapiens] 42 4e-04
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 42 5e-04
gi|9966841 cell death regulator aven [Homo sapiens] 42 5e-04
gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho... 42 5e-04
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 42 6e-04
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 42 6e-04
gi|9558733 transformer-2 alpha [Homo sapiens] 42 6e-04
gi|12056465 fibrillarin [Homo sapiens] 41 0.001
gi|14670268 RD RNA-binding protein [Homo sapiens] 41 0.001
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 41 0.001
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 41 0.001
gi|52426743 cisplatin resistance-associated overexpressed protei... 40 0.001
gi|19923485 cisplatin resistance-associated overexpressed protei... 40 0.001
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 40 0.002
>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
sapiens]
Length = 240
Score = 505 bits (1301), Expect = e-143
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
Query: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
Sbjct: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 181 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240
LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
Sbjct: 181 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240
>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
sapiens]
Length = 240
Score = 492 bits (1266), Expect = e-139
Identities = 233/240 (97%), Positives = 236/240 (98%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTI + NIYRNPQNS+Q
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
+ADG CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 181 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240
LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
Sbjct: 181 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240
>gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 419 bits (1078), Expect = e-118
Identities = 207/245 (84%), Positives = 216/245 (88%), Gaps = 7/245 (2%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
MAE ASIFGTEK VNCSF FKIGAC HGDRCS LH+KPTFSQTI + NIY NPQN++Q
Sbjct: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
Query: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
+ADG CA+SDVE+QEHYDEFFEEVF E+ EKYGEVEEMNVCDNLGDHLVGNVY K RE
Sbjct: 59 SADGLRCALSDVEVQEHYDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
Query: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
EDAEKAVIDLNNRWFNGQPIHAELSPVTDFR ACCRQYEMGECTRGGFCNFMHLKPISRE
Sbjct: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRE 178
Query: 181 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGG-----GGGGGRERDRRRSRDRE 235
LRREL G+RRKKHRSRSRSRER SRS DRG G GGGGG GGGGGRERDRRR RDRE
Sbjct: 179 LRRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRE 238
Query: 236 RSGRF 240
RSGRF
Sbjct: 239 RSGRF 243
>gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 416 bits (1069), Expect = e-117
Identities = 206/245 (84%), Positives = 215/245 (87%), Gaps = 7/245 (2%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
MAE ASIFGTEK VNCSF FKIGAC HGDRCS LH+KPTFSQTI + NIY NPQN++Q
Sbjct: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
Query: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
+ADG CA+SDVE+QEH DEFFEEVF E+ EKYGEVEEMNVCDNLGDHLVGNVY K RE
Sbjct: 59 SADGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
Query: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
EDAEKAVIDLNNRWFNGQPIHAELSPVTDFR ACCRQYEMGECTRGGFCNFMHLKPISRE
Sbjct: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRE 178
Query: 181 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGG-----GGGGGRERDRRRSRDRE 235
LRREL G+RRKKHRSRSRSRER SRS DRG G GGGGG GGGGGRERDRRR RDRE
Sbjct: 179 LRRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRE 238
Query: 236 RSGRF 240
RSGRF
Sbjct: 239 RSGRF 243
>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
sapiens]
Length = 167
Score = 354 bits (908), Expect = 4e-98
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 74 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 133
MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR
Sbjct: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
Query: 134 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 193
WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH
Sbjct: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 120
Query: 194 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240
RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
Sbjct: 121 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 167
>gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
1 [Homo sapiens]
Length = 181
Score = 275 bits (704), Expect = 2e-74
Identities = 137/210 (65%), Positives = 152/210 (72%), Gaps = 44/210 (20%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
MAEYLASIFGTEKDKVNCSFYFKIG CRHGDRCSRLHNKPTFSQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
Query: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRRE
Sbjct: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
Query: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
ED E+AV +L+NRWFNGQ +H ELSPVTDFRE+CCRQYEMGECTRGGFCNFMHL+PIS+
Sbjct: 82 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN 141
Query: 181 LRRELYGR--RRK---KHRSRSRSRERRSR 205
L+R+LYGR RR+ + + RER R
Sbjct: 142 LQRQLYGRGPRRRSPPRFHTGHHPRERNHR 171
>gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
2 [Homo sapiens]
Length = 202
Score = 187 bits (475), Expect = 7e-48
Identities = 93/155 (60%), Positives = 101/155 (65%), Gaps = 39/155 (25%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
MAEYLASIFGTEKDKVNCSFYFKIG CRHGDRCSRLHNKPTFSQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
Query: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRRE
Sbjct: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
Query: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACC 155
ED E+AV +L+NRWFNGQ +H + V C
Sbjct: 82 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCIC 116
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 141 bits (355), Expect = 6e-34
Identities = 95/293 (32%), Positives = 135/293 (46%), Gaps = 68/293 (23%)
Query: 12 EKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQTADG----SHC 67
EKD+ NC FY K GACR GDRCSR HN PT S T+LI++++ D +
Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 225
Query: 68 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAV 127
S+ E + + +F+E+V E + G+V + V NL HL GNVYV+++ EE+ + A+
Sbjct: 226 EYSEEETYQQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAAL 284
Query: 128 IDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHL--KPISR--ELRR 183
N RW+ G+ + E PVT ++ A C +E+ +C RG CNF+H+ P + E R
Sbjct: 285 SLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANR 344
Query: 184 ELY-------------------------------GRR----------------------- 189
++Y GRR
Sbjct: 345 DIYLSPDRTGSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRG 404
Query: 190 RKKHRSRSRSRER-----RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 237
+K H+ S+SRER R R+RDR R G G R R RR R R +S
Sbjct: 405 KKSHKRTSKSRERHNSRSRGRNRDRSRDRSRGRGSRSRSRSRSRRSRRSRSQS 457
Score = 38.5 bits (88), Expect = 0.005
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 187 GRRRKKHRSRSRSRERRSRSRDRG-RGGGGGGGGGGGGRERDRRRSRDRERS 237
GR R + R RSR R RSRSR R R R R RRRS +R+R+
Sbjct: 424 GRNRDRSRDRSRGRGSRSRSRSRSRRSRRSRSQSSSRSRSRGRRRSGNRDRT 475
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 44.7 bits (104), Expect = 7e-05
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 179 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSG 238
RE RE + R++ RSRSR R RRSRSRD+ R+R RR SR RER+
Sbjct: 242 RERSRER-DKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR 300
Query: 239 R 239
R
Sbjct: 301 R 301
Score = 39.3 bits (90), Expect = 0.003
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 15/153 (9%)
Query: 91 EKYGEVEEMN-VCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTD 149
E YG ++ ++ V G ++++ E D A + + +G+ + ++
Sbjct: 124 EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183
Query: 150 FREACCRQYE--MGECTRGGF-CNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRS 206
+ R+ +G RGG N H E G HR R R RER R
Sbjct: 184 VKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRE 243
Query: 207 RDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
R R R +ER+RRRSR R+R R
Sbjct: 244 RSRER-----------DKERERRRSRSRDRRRR 265
Score = 38.1 bits (87), Expect = 0.007
Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 188 RRRKKHRSRSRSRERRSRSR-DRGRGGGG---------------------GGGGGGGGRE 225
R RK+ SRSR R RR R R + RGGGG G G G E
Sbjct: 286 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEE 345
Query: 226 RDRRRSRDRERSGR 239
+ R R R+R RS R
Sbjct: 346 KGRDRDRERRRSHR 359
Score = 37.7 bits (86), Expect = 0.009
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 179 RELRRELYGRRRKKHRSRSRSRERR------SRSRDRGRGGGGGGGGGGGGRERDRR 229
R R RRR + R R R RE + R RD RGGGGG G G D R
Sbjct: 355 RRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSR 411
Score = 37.4 bits (85), Expect = 0.012
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 192 KHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
+ R R R RERR RSR+R + RER R RSRDR R R
Sbjct: 231 RDRDRDRERERRERSRERDK-----------ERERRRSRSRDRRRRSR 267
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 180 ELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSG 238
E R+ RR+ HRS R R R RDR R G ER R RD R G
Sbjct: 345 EKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRG--------ERGSERGRDEARGG 395
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 44.3 bits (103), Expect = 1e-04
Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 188 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 237
RRR + RSRSRS RRSRS DR R GG R R++RR R R S
Sbjct: 571 RRRSRSRSRSRSTRRRSRSTDRRR------GGSRRSRSREKRRRRRRSAS 614
Score = 36.6 bits (83), Expect = 0.020
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 178 SRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSR 232
SR+ + + + RSRSRSR R +R R R GG RE+ RRR R
Sbjct: 557 SRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRR 611
Score = 36.6 bits (83), Expect = 0.020
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 187 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
G+ +K R RS + S SR++G GG R+RDR R RDR+RS +
Sbjct: 744 GKSSQKDRRRSGAASSSSSSREKG---SRRKALDGGDRDRDRDRDRDRDRSSK 793
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 191 KKHRSRSR--------SRERRSRSRDRGRGGGGGGGG-----GGGGRERDRRRSRDRERS 237
KKHRSR R S RRSRSR R R GG R R R + R R RS
Sbjct: 553 KKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRS 612
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 178 SRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGG 217
S RRE R R KHR S++++ RSR RG G G
Sbjct: 622 SSSSRRE---RHRGKHRDGGGSKKKKKRSRSRGEKRSGDG 658
Score = 28.5 bits (62), Expect = 5.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 192 KHRSRSRSRERRSRSRDRGRGGGGGGGGGG 221
K ++ + + S++R + R GGG GG GG
Sbjct: 909 KKTKGTKGKTKPSKTRKKVRSGGGSGGSGG 938
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 44.3 bits (103), Expect = 1e-04
Identities = 32/61 (52%), Positives = 35/61 (57%), Gaps = 14/61 (22%)
Query: 179 RELRRELYGRRRKKHRSRSRSRE--RRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R+ RRE R R K RSRSR R+ RRSRSR+R R RER R RSRDR R
Sbjct: 45 RDRRRER-SRSRDKRRSRSRDRKRLRRSRSRERDR-----------SRERRRSRSRDRRR 92
Query: 237 S 237
S
Sbjct: 93 S 93
Score = 40.4 bits (93), Expect = 0.001
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 179 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSG 238
R R R R++ RSRSR R RRSRSR RGR G + +R RS+++ G
Sbjct: 69 RRSRSRERDRSRERRRSRSRDR-RRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGG 127
Score = 39.3 bits (90), Expect = 0.003
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 175 KPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 234
K + R RE R R + R RSRSR+RR RSR R RG G ++ RSR +
Sbjct: 66 KRLRRSRSRE---RDRSRERRRSRSRDRR-RSRSRSRGRRSRSSSPGNKSKKTENRSRSK 121
Query: 235 ERS 237
E++
Sbjct: 122 EKT 124
Score = 38.9 bits (89), Expect = 0.004
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 14/62 (22%)
Query: 178 SRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 237
SR+ RR R++ RSRSR R+ RSR+R R R RDRRRSR R R
Sbjct: 54 SRDKRRSRSRDRKRLRRSRSRERD---RSRERRR-----------SRSRDRRRSRSRSRG 99
Query: 238 GR 239
R
Sbjct: 100 RR 101
Score = 37.0 bits (84), Expect = 0.015
Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 22/69 (31%)
Query: 178 SRELRRELYGRRRKKHRSRSRSR---------ERRSRSRDRGRGGGGGGGGGGGGRERDR 228
SR R+ R R RSRSRS +RRSRSRDR R R+R
Sbjct: 5 SRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDR-------------RRER 51
Query: 229 RRSRDRERS 237
RSRD+ RS
Sbjct: 52 SRSRDKRRS 60
Score = 35.0 bits (79), Expect = 0.058
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 187 GRRRKKHRSRSRSRERR-SRSRDRG---RGGGGGGGGGGGGRERDRRRSRDRERSGR 239
GR + +R RS SR R SRSR R + G R+RDRRR R R R R
Sbjct: 2 GRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKR 58
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 44.3 bits (103), Expect = 1e-04
Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 173 HLKPISRELRRELYGRRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRR-R 230
H + SRE R R RKK RSRSR R++ RSRSR+R + RER RR R
Sbjct: 66 HSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKK-------SRSRSRERKRRIR 118
Query: 231 SRDRERS 237
SR R RS
Sbjct: 119 SRSRSRS 125
Score = 42.4 bits (98), Expect = 4e-04
Identities = 26/50 (52%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 188 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 237
R RKK RSRSR R+RR RSR R R R R R RSR R RS
Sbjct: 101 RERKKSRSRSRERKRRIRSRSRSR-----------SRHRHRTRSRSRTRS 139
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 179 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R R+E R + H SRSRSRERR RSR R R RER + RSR RER
Sbjct: 52 RHKRKERKSSRGRSH-SRSRSRERRHRSRSRER-----KKSRSRSRERKKSRSRSRER 103
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 44.3 bits (103), Expect = 1e-04
Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 173 HLKPISRELRRELYGRRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRR-R 230
H + SRE R R RKK RSRSR R++ RSRSR+R + RER RR R
Sbjct: 125 HSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKK-------SRSRSRERKRRIR 177
Query: 231 SRDRERS 237
SR R RS
Sbjct: 178 SRSRSRS 184
Score = 42.4 bits (98), Expect = 4e-04
Identities = 26/50 (52%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 188 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 237
R RKK RSRSR R+RR RSR R R R R R RSR R RS
Sbjct: 160 RERKKSRSRSRERKRRIRSRSRSR-----------SRHRHRTRSRSRTRS 198
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 179 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R R+E R + H SRSRSRERR RSR R R RER + RSR RER
Sbjct: 111 RHKRKERKSSRGRSH-SRSRSRERRHRSRSRER-----KKSRSRSRERKKSRSRSRER 162
Score = 31.2 bits (69), Expect = 0.84
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 189 RRKKH---RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 237
R KH RSRSRSRER+ +S + GR G R + +S + +S
Sbjct: 34 RASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKS 85
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 157 QYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRE-RRSRSRDR 209
Q E+ R ++ + SRE +R+ RK HRSRSRS+E RR S+D+
Sbjct: 26 QSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRK-HRSRSRSKEGRRHESKDK 78
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 43.9 bits (102), Expect = 1e-04
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 144 LSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSR--- 200
LSP R + R + F + + + L RE R +++ RSRS R
Sbjct: 267 LSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLE 326
Query: 201 ERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
RRSRSR+R R G R+RDR R ++ ER R
Sbjct: 327 RRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRR 365
Score = 38.1 bits (87), Expect = 0.007
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 13/52 (25%)
Query: 188 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
++ KKH SRSRSRER+ RSR R R G R RSR +E+S +
Sbjct: 420 KKEKKH-SRSRSRERKHRSRSRSRNAG------------KRSRSRSKEKSSK 458
Score = 30.4 bits (67), Expect = 1.4
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 28/77 (36%)
Query: 189 RRKKHRSRSRS--RERRSRSRD-----------------RGRGGGGGGGGG--------- 220
R +KHRSRSRS +RSRSR R R G G
Sbjct: 431 RERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREH 490
Query: 221 GGGRERDRRRSRDRERS 237
+E+ R+RSR +ERS
Sbjct: 491 SPSKEKSRKRSRSKERS 507
Score = 28.5 bits (62), Expect = 5.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 187 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
G R+K R RSR R + RSR G ++D RR RD +R +
Sbjct: 375 GNEREKERERSRERSKEQRSR-------GEVEEKKHKEDKDDRRHRDDKRDSK 420
Score = 28.1 bits (61), Expect = 7.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 189 RRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSR 232
R ++ + RSRSR R + R R R +E+ +RSR
Sbjct: 429 RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSR 472
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 43.5 bits (101), Expect = 2e-04
Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 26/154 (16%)
Query: 91 EKYGEVEEMNVC-DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTD 149
EKYG V ++ + D G +V+F + DAE A+ ++ +G+ + +++
Sbjct: 35 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG- 93
Query: 150 FREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRR----RKKHRSRSRSRERRSR 205
R + RG P R YGRR R++ RSRSRSR R SR
Sbjct: 94 ------RPPDSHHSRRG---------PPPRRYGGGGYGRRSRSPRRRRRSRSRSRSR-SR 137
Query: 206 SRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
SR R R R R R RS + RS R
Sbjct: 138 SRSRSR----YSRSKSRSRTRSRSRSTSKSRSAR 167
>gi|224549005 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 42.4 bits (98), Expect = 4e-04
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 79 DEFFEEVFTEMEEKYGEVEEMNVCDNLG--DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 136
DE E E EKYG+V + + + G D ++++F R E A KAV+DLN R+F
Sbjct: 319 DEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 378
Query: 137 GQPIHAELSPVTDFR 151
G+ + A + FR
Sbjct: 379 GRVVKACFYNLDKFR 393
>gi|14249678 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 42.4 bits (98), Expect = 4e-04
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 79 DEFFEEVFTEMEEKYGEVEEMNVCDNLG--DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 136
DE E E EKYG+V + + + G D ++++F R E A KAV+DLN R+F
Sbjct: 319 DEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 378
Query: 137 GQPIHAELSPVTDFR 151
G+ + A + FR
Sbjct: 379 GRVVKACFYNLDKFR 393
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapiens]
Length = 1341
Score = 42.0 bits (97), Expect = 5e-04
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 175 KPISRELRRELYGRRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRD 233
K RE R+L +R++H SR R RER R R RDRG GRERDRR ++
Sbjct: 1265 KEAERERNRQLEREKRREH-SRERDRERERERERDRGDRDRDRERDRERGRERDRRDTKR 1323
Query: 234 RERS 237
RS
Sbjct: 1324 HSRS 1327
Score = 38.1 bits (87), Expect = 0.007
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 14/65 (21%)
Query: 175 KPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 234
+ + RE RRE + R R + R R R R+R R RDR R +R+R R RDR
Sbjct: 1273 RQLEREKRRE-HSRERDRERERERERDRGDRDRDRER-------------DRERGRERDR 1318
Query: 235 ERSGR 239
+ R
Sbjct: 1319 RDTKR 1323
Score = 32.0 bits (71), Expect = 0.49
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 183 RELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
RE + R ++ R R+R R RD+ R G R R RSRDR R R
Sbjct: 1143 REQWAEREREMERRERTRSEREWDRDKVREG-----------PRSRSRSRDRRRKER 1188
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 42.0 bits (97), Expect = 5e-04
Identities = 27/57 (47%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 187 GRRRKKHRSR---SRSRERRSRSRDRGRGGGGGGGGGGGGRE-RDRRRSRDRERSGR 239
GR R+ R R R ER + RGGGGGGGG GGGR R R R R GR
Sbjct: 10 GRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGR 66
Score = 28.1 bits (61), Expect = 7.1
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 202 RRSRSRDRG----RGGGGGGGGGGGGR 224
RR R R RG RGG GGGG G R
Sbjct: 50 RRGRGRGRGFRGARGGRGGGGAPRGSR 76
>gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Homo
sapiens]
Length = 155
Score = 42.0 bits (97), Expect = 5e-04
Identities = 24/46 (52%), Positives = 27/46 (58%), Gaps = 11/46 (23%)
Query: 189 RRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 234
RR++ RSRS SRER R R+R R RERDRRRSR R
Sbjct: 10 RRERRRSRSTSRERERRRRERSR-----------SRERDRRRSRSR 44
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 41.6 bits (96), Expect = 6e-04
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 11/55 (20%)
Query: 182 RRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R+E+ RR++ R R R RERR R R+R R RER++ + R+RER
Sbjct: 302 RQEIEKERRERERERERERERRERERERER-----------EREREKEKERERER 345
Score = 39.3 bits (90), Expect = 0.003
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 179 RELRRELYGRRRKKHRSRSRSRER-------RSRSRDRGRGGGGGGGGGGGGRERDRRRS 231
RE RE RR++ R R R RER R R RDR R R+RDR R
Sbjct: 312 RERERERERERREREREREREREREKEKERERERERDRDR-----DRTKERDRDRDRERD 366
Query: 232 RDRER 236
RDR+R
Sbjct: 367 RDRDR 371
Score = 36.2 bits (82), Expect = 0.026
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 188 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R R+K R R R RER R R R+R R RER+R R R+RER
Sbjct: 383 RSREKSRDRERERERERERERERERE-----------RERERERERERER 421
Score = 35.4 bits (80), Expect = 0.044
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 188 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R R + +SR R RER R R R+R R RER+R R R+RER
Sbjct: 381 RSRSREKSRDRERERERERERERERE-----------RERERERERERER 419
Score = 35.0 bits (79), Expect = 0.058
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 14/52 (26%)
Query: 188 RRRKKHRSRSRSRER---RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R R + R R RS +R RSRSR++ R RER+R R R+RER
Sbjct: 363 RERDRDRDRERSSDRNKDRSRSREKSRD-----------RERERERERERER 403
Score = 34.3 bits (77), Expect = 0.099
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 12/50 (24%)
Query: 188 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R + + RSR +SR+R R R R+R R RER+R R R+RER
Sbjct: 377 RNKDRSRSREKSRDRERERERERERE-----------RERERERERERER 415
Score = 34.3 bits (77), Expect = 0.099
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 15/59 (25%)
Query: 178 SRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
SRE R+ R R++ R R R RER R R+R R RER+R R R+RE+
Sbjct: 384 SREKSRD---RERERERERERERERE-RERERERE-----------REREREREREREK 427
Score = 33.5 bits (75), Expect = 0.17
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 188 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R R R++ RSR R +SR R+R R RER+R R R+RER
Sbjct: 371 RERSSDRNKDRSRSREKSRDRERERE-----------RERERERERERER 409
Score = 33.5 bits (75), Expect = 0.17
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 12/50 (24%)
Query: 188 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R +++ RSRSRE+ R R R+R R RER+R R R+RER
Sbjct: 373 RSSDRNKDRSRSREKSRDRERERERE-----------RERERERERERER 411
Score = 32.7 bits (73), Expect = 0.29
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 179 RELRRELYGRRRKKHRSRSR-SRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
R+ ++L + KK + R +ERR R R+R R RER+R R R+RER
Sbjct: 285 RDTHKKLEEEKGKKEKERQEIEKERRERERERER--------ERERRERERERERERER 335
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 41.6 bits (96), Expect = 6e-04
Identities = 21/29 (72%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 211 RGGGGGGGGGGGGRE-RDRRRSRDRERSG 238
RGGGGG GGGGGGRE R R S R RSG
Sbjct: 26 RGGGGGAGGGGGGREKRGRPESPRRRRSG 54
Score = 31.6 bits (70), Expect = 0.64
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 184 ELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGG--GGGRERDRRRSRDRERS 237
++ GR ++ RS G GG GGGGGG GR RR R ER+
Sbjct: 2 QIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERA 57
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 41.6 bits (96), Expect = 6e-04
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 210 GRGGGGGGGGGGGGRERDRRRSRDRER 236
G GGGGGGGGGGGGR RD R +R
Sbjct: 218 GGGGGGGGGGGGGGRRRDSYYDRGYDR 244
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 205 RSRDRGRGGGGGGGGGGGGRERDRRRSRDR 234
R G GGGGGGGGGGGG R R DR
Sbjct: 211 RPTHSGGGGGGGGGGGGGGGGRRRDSYYDR 240
Score = 37.0 bits (84), Expect = 0.015
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 184 ELYGRRRKKHRSRSRSRERRSRSRDRGR----GGGGGGGGGGGGRERDRRRSRDRER 236
EL GRR + S ++ + GR GGGGGGGGGGGG RRR +R
Sbjct: 184 ELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR 240
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 40.8 bits (94), Expect = 0.001
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 200 RERRSRSRDRGRGGGGGGGGGGGG 223
R R R RGRGGGGGGGGGGGG
Sbjct: 34 RGRGGGFRGRGRGGGGGGGGGGGG 57
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/44 (47%), Positives = 23/44 (52%)
Query: 196 RSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
R R R R R G GGGGGGGGG GG +R R R G+
Sbjct: 34 RGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGK 77
Score = 36.6 bits (83), Expect = 0.020
Identities = 19/41 (46%), Positives = 19/41 (46%)
Query: 194 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 234
R R R R G GGGGGGG GGGG R R R
Sbjct: 34 RGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Score = 29.3 bits (64), Expect = 3.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 210 GRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
G GGGGG GGGG +R R R +R +
Sbjct: 52 GGGGGGGRGGGGFHSGGNRGRGRGGKRGNQ 81
Score = 27.7 bits (60), Expect = 9.2
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 211 RGGGGGGGGGGGGRER 226
RGG GG GG GGGR R
Sbjct: 21 RGGRGGRGGFGGGRGR 36
>gi|14670268 RD RNA-binding protein [Homo sapiens]
Length = 380
Score = 40.8 bits (94), Expect = 0.001
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 188 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240
R R + R R R RER R R RDR R R+RDR R RDR+R G F
Sbjct: 202 RERDRDRDRDRDRERDRDRDRDRDRDRE---------RDRDRERDRDRDREGPF 246
Score = 31.2 bits (69), Expect = 0.84
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 186 YGRRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 236
Y R H S S R R R RS +R R R+RDR R RDR+R
Sbjct: 170 YEERSGAHSSASPPRSRSRDRSHERNRD-----------RDRDRERDRDRDR 210
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 83 EEVFTEMEEKYGEVEEMNVC-DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 141
E E+ KYG + ++++ D G +V F +DA++A N +G+ I
Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190
Query: 142 AELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRE 201
+ S +T MG T G RR+ Y R + R+
Sbjct: 191 VDFS-ITKRPHTPTPGIYMGRPTYGS------------SRRRDYYDRGYDRGYD---DRD 234
Query: 202 RRSRSRDRGRGGGGGGGGGGGGRERD---RRRS 231
SRS RGGGGGGGG ++RD RRRS
Sbjct: 235 YYSRSY---RGGGGGGGGWRAAQDRDQIYRRRS 264
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 173 HLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSR 232
H SR R + + RS SRSR RRS R R R R RRSR
Sbjct: 32 HTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTR---------SRSRSRSHRRSR 82
Query: 233 DRERS 237
R S
Sbjct: 83 SRSYS 87
Score = 30.4 bits (67), Expect = 1.4
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 189 RRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 234
R RSRS+ RRSRS+ R R R R RSR R
Sbjct: 31 RHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSR 76
Score = 29.6 bits (65), Expect = 2.4
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 187 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
G+ + +RSRS+E RSR + R R RSR R RS R
Sbjct: 27 GKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHR 79
Score = 29.3 bits (64), Expect = 3.2
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 175 KPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 234
K SR R + R + RSR SR +RSR R R R R R SRD
Sbjct: 40 KEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSR---------SHRRSRSRSYSRDY 90
Query: 235 ER 236
R
Sbjct: 91 RR 92
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/40 (50%), Positives = 22/40 (55%)
Query: 187 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRER 226
G+ K SR R S+ G GGGGGGGGGGGG R
Sbjct: 12 GKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGGGGGGGNR 51
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 187 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRR 229
G + R R S+S G GGGGGGGGGGG R+ R
Sbjct: 14 GGGKGSSRGGRGGRSHASKSHGSGGGGGGGGGGGGGNRKASSR 56
Score = 32.0 bits (71), Expect = 0.49
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 177 ISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 234
+S +RR+ G+ K S R RS G GGGGGGGGG R++ R
Sbjct: 1 MSSSVRRK--GKPGKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGGGGGGGNRKASSR 56
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 40.4 bits (93), Expect = 0.001
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 18/72 (25%)
Query: 175 KPISRELRRELYGRRRKKHRSR------SRSRE-RRSRSRDRGRGGGGGGGGGGGGRERD 227
K +R+ R R R +H SR SRSR+ +RSRSR+R R R RD
Sbjct: 281 KERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRS-----------RSRD 329
Query: 228 RRRSRDRERSGR 239
RRRSR +RS R
Sbjct: 330 RRRSRSHDRSER 341
Score = 38.9 bits (89), Expect = 0.004
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 179 RELRRELYGRRRKKH-----RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRD 233
RE RE R+R++ + R+R RERR RSR R R R RD +RSR
Sbjct: 261 REREREERERKRRREEEEREKERARDRERRKRSRSRSR-HSSRTSDRRCSRSRDHKRSRS 319
Query: 234 RER 236
RER
Sbjct: 320 RER 322
Score = 36.6 bits (83), Expect = 0.020
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 179 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRR--RSRDRER 236
RE +R R+K R+R R R +RSRSR R R DRR RSRD +R
Sbjct: 268 RERKRRREEEEREKERARDRERRKRSRSRSRH-----------SSRTSDRRCSRSRDHKR 316
Query: 237 S 237
S
Sbjct: 317 S 317
Score = 35.8 bits (81), Expect = 0.034
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 19/71 (26%)
Query: 173 HLKPISRELRRELYGRRRKKHRSRSRS-RERRSRSRDRGRGGGGGGGGGGGGRERDRR-- 229
H + SRE RR R R++ RS RS R+ RSRSRDR R + RDR+
Sbjct: 314 HKRSRSRERRRSR-SRDRRRSRSHDRSERKHRSRSRDRRR-----------SKSRDRKSY 361
Query: 230 ----RSRDRER 236
+SRDRE+
Sbjct: 362 KHRSKSRDREQ 372
Score = 32.7 bits (73), Expect = 0.29
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 188 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
++ ++ R + R RER R R R R ER++ R+RDRER R
Sbjct: 251 KQEREEREKEREREREERERKRRREE----------EEREKERARDRERRKR 292
Score = 29.3 bits (64), Expect = 3.2
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 178 SRELRR-ELYGRRRKKHRSRSRSRERRSRSRDRGRGG 213
SR+ RR + R+ KHRS+SR RE+ +S+++ + G
Sbjct: 347 SRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRG 383
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 40.4 bits (93), Expect = 0.001
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 18/72 (25%)
Query: 175 KPISRELRRELYGRRRKKHRSR------SRSRE-RRSRSRDRGRGGGGGGGGGGGGRERD 227
K +R+ R R R +H SR SRSR+ +RSRSR+R R R RD
Sbjct: 281 KERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRS-----------RSRD 329
Query: 228 RRRSRDRERSGR 239
RRRSR +RS R
Sbjct: 330 RRRSRSHDRSER 341
Score = 38.9 bits (89), Expect = 0.004
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 179 RELRRELYGRRRKKH-----RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRD 233
RE RE R+R++ + R+R RERR RSR R R R RD +RSR
Sbjct: 261 REREREERERKRRREEEEREKERARDRERRKRSRSRSR-HSSRTSDRRCSRSRDHKRSRS 319
Query: 234 RER 236
RER
Sbjct: 320 RER 322
Score = 36.6 bits (83), Expect = 0.020
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 179 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRR--RSRDRER 236
RE +R R+K R+R R R +RSRSR R R DRR RSRD +R
Sbjct: 268 RERKRRREEEEREKERARDRERRKRSRSRSRH-----------SSRTSDRRCSRSRDHKR 316
Query: 237 S 237
S
Sbjct: 317 S 317
Score = 35.8 bits (81), Expect = 0.034
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 19/71 (26%)
Query: 173 HLKPISRELRRELYGRRRKKHRSRSRS-RERRSRSRDRGRGGGGGGGGGGGGRERDRR-- 229
H + SRE RR R R++ RS RS R+ RSRSRDR R + RDR+
Sbjct: 314 HKRSRSRERRRSR-SRDRRRSRSHDRSERKHRSRSRDRRR-----------SKSRDRKSY 361
Query: 230 ----RSRDRER 236
+SRDRE+
Sbjct: 362 KHRSKSRDREQ 372
Score = 32.7 bits (73), Expect = 0.29
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 188 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 239
++ ++ R + R RER R R R R ER++ R+RDRER R
Sbjct: 251 KQEREEREKEREREREERERKRRREE----------EEREKERARDRERRKR 292
Score = 29.3 bits (64), Expect = 3.2
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 178 SRELRR-ELYGRRRKKHRSRSRSRERRSRSRDRGRGG 213
SR+ RR + R+ KHRS+SR RE+ +S+++ + G
Sbjct: 347 SRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRG 383
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 188 RRRKKHRSRSRSRER-------RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240
++RKK +SRSRS ER R RSRDR R R ++RRRSR R R RF
Sbjct: 33 KKRKKSKSRSRSHERKRSKSKERKRSRDRER-KKSKSRERKRSRSKERRRSRSRSRDRRF 91
Score = 32.3 bits (72), Expect = 0.38
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 175 KPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGR-------ERD 227
K SRE +R R +++ RSRSRSR+RR R R R G G+ +
Sbjct: 65 KSKSRERKRS---RSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLS 121
Query: 228 RRRSRDR 234
RRRSR +
Sbjct: 122 RRRSRSK 128
Score = 32.0 bits (71), Expect = 0.49
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 39 KPTFSQTILIQNIYRNPQNSAQTADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE 98
+P +Q + N++ NPQ + D E++ D+ EE K+G V
Sbjct: 413 QPLATQCFQLSNMF-NPQTEEEVG-------WDTEIK---DDVIEEC-----NKHGGVIH 456
Query: 99 MNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDF 150
+ V N GNVYVK A AV L+ RWF G+ I A P+ +
Sbjct: 457 IYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 505
Score = 29.3 bits (64), Expect = 3.2
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Query: 178 SRELRRELYGRRRK---KHRSRSRSRERR---SRSRDR 209
S+E +R R+K + R RSRS+ERR SRSRDR
Sbjct: 52 SKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDR 89
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,950,042
Number of Sequences: 37866
Number of extensions: 507622
Number of successful extensions: 16401
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 7584
Number of HSP's gapped (non-prelim): 5301
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.