Guide to the Human Genome
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Name: SNCA Sequence: fasta or formatted (112aa) NCBI GI: 6806898
Description:

alpha-synuclein isoform NACP112

Referenced in:

Mammary Tissues
Neurons

Other entries for this name:
alt prot [140aa] alpha-synuclein isoform NACP140
alt prot [140aa] alpha-synuclein isoform NACP140
alt prot [140aa] alpha-synuclein isoform NACP140
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.2         17           3
 C cysteine            0.0          0           0
 D aspartate           2.7          3           1
 E glutamate           9.8         11           1
 F phenylalanine       1.8          2           1
 G glycine            14.3         16           2
 H histidine           0.9          1           1
 I isoleucine          0.9          1           1
 K lysine             13.4         15           2
 L leucine             2.7          3           1
 M methionine          1.8          2           1
 N asparagine          0.9          1           1
 P proline             0.9          1           1
 Q glutamine           4.5          5           1
 R arginine            0.0          0           0
 S serine              2.7          3           1
 T threonine           8.9         10           1
 V valine             16.1         18           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha-synuclein isoform NACP112 
SNCA                  0.921   alpha-synuclein isoform NACP140 
SNCA                  0.921   alpha-synuclein isoform NACP140 
SNCA                  0.921   alpha-synuclein isoform NACP140 
SNCB                  0.555   beta-synuclein 
SNCB                  0.555   beta-synuclein 
SNCG                  0.508   synuclein, gamma (breast cancer-specific protein 1)...
VPS13D                0.031   vacuolar protein sorting 13D isoform 2 
VPS13D                0.031   vacuolar protein sorting 13D isoform 1 
M6PRBP1               0.026   mannose 6 phosphate receptor binding protein 1 [Homo...
KIAA1881              0.021   plasma membrane associated protein, S3-12 
VPS13C                0.021   vacuolar protein sorting 13C protein isoform 1A [Hom...
VPS13C                0.021   vacuolar protein sorting 13C protein isoform 1B [Hom...
VPS13C                0.021   vacuolar protein sorting 13C protein isoform 2B [Hom...
VPS13C                0.021   vacuolar protein sorting 13C protein isoform 2A [Hom...
C12orf23              0.016   hypothetical protein LOC90488 
TTN                   0.016   titin isoform novex-3 
TTN                   0.016   titin isoform N2-A 
TTN                   0.016   titin isoform novex-2 
TTN                   0.016   titin isoform novex-1 
TTN                   0.016   titin isoform N2-B 
TCF20                 0.010   transcription factor 20 isoform 2 
TCF20                 0.010   transcription factor 20 isoform 1 
MPP6                  0.010   membrane protein, palmitoylated 6 
CAND2                 0.005   TBP-interacting protein isoform 1 
CAND2                 0.005   TBP-interacting protein isoform 2 
TP53I3                0.005   tumor protein p53 inducible protein 3 
TP53I3                0.005   tumor protein p53 inducible protein 3 
PIM3                  0.005   serine/threonine protein kinase pim-3 
STAB2                 0.005   stabilin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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