Guide to the Human Genome
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Name: KIAA1881 Sequence: fasta or formatted (1357aa) NCBI GI: 122937195
Description:

plasma membrane associated protein, S3-12

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7        159           3
 C cysteine            1.1         15           1
 D aspartate           4.7         64           1
 E glutamate           2.5         34           2
 F phenylalanine       1.1         15           2
 G glycine            13.9        188           2
 H histidine           0.9         12           1
 I isoleucine          1.3         17           1
 K lysine              6.6         90           1
 L leucine             7.0         95           2
 M methionine          1.8         25           1
 N asparagine          2.8         38           1
 P proline             2.4         32           2
 Q glutamine           5.0         68           2
 R arginine            1.7         23           1
 S serine              6.2         84           2
 T threonine          16.6        225           2
 V valine             12.0        163           2
 W tryptophan          0.4          6           1
 Y tyrosine            0.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plasma membrane associated protein, S3-12 
LOC100294249          0.055   PREDICTED: hypothetical protein XP_002344067 
LOC729792             0.054   PREDICTED: hypothetical protein 
LOC729792             0.054   PREDICTED: hypothetical protein 
LOC100294501          0.054   PREDICTED: hypothetical protein 
LOC100294238          0.054   PREDICTED: hypothetical protein 
LOC100294204          0.054   PREDICTED: hypothetical protein 
LOC730401             0.054   PREDICTED: hypothetical protein 
LOC729792             0.054   PREDICTED: hypothetical protein 
LOC100294136          0.054   PREDICTED: hypothetical protein 
LOC100294091          0.054   PREDICTED: hypothetical protein 
MUC2                  0.039   mucin 2 precursor 
LSDP5                 0.035   lipid storage droplet protein 5 
MUC4                  0.033   mucin 4 isoform a 
MUC21                 0.032   mucin 21 
M6PRBP1               0.032   mannose 6 phosphate receptor binding protein 1 [Homo...
HCFC1                 0.024   host cell factor 1 
MUC5B                 0.023   mucin 5, subtype B, tracheobronchial 
ADFP                  0.022   adipose differentiation-related protein 
MUC19                 0.020   PREDICTED: mucin 19, oligomeric 
MUC19                 0.020   PREDICTED: mucin 19, oligomeric 
MUC19                 0.020   PREDICTED: mucin 19 
MUC17                 0.019   mucin 17 
MUC5AC                0.017   mucin 5AC 
MUC16                 0.016   mucin 16 
LOC100294236          0.016   PREDICTED: similar to diffuse panbronchiolitis crit...
LOC100131514          0.015   PREDICTED: similar to hCG1747327, partial 
MUC12                 0.014   PREDICTED: mucin 12 
MUC12                 0.014   PREDICTED: mucin 12, cell surface associated 
LOC100294420          0.013   PREDICTED: similar to mucin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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