Guide to the Human Genome
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Name: ALG1L Sequence: fasta or formatted (187aa) NCBI GI: 62632744
Description:

asparagine-linked glycosylation 1-like

Referenced in:

Protein Glycosylation
DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          7           2
 C cysteine            4.3          8           2
 D aspartate           5.9         11           1
 E glutamate           7.5         14           2
 F phenylalanine       5.9         11           2
 G glycine             5.9         11           1
 H histidine           2.7          5           1
 I isoleucine          1.1          2           1
 K lysine              3.7          7           1
 L leucine            15.0         28           2
 M methionine          4.3          8           1
 N asparagine          2.7          5           1
 P proline             5.9         11           1
 Q glutamine           4.8          9           2
 R arginine            4.3          8           1
 S serine              9.1         17           3
 T threonine           2.7          5           1
 V valine              8.0         15           2
 W tryptophan          2.7          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   asparagine-linked glycosylation 1-like 
ALG1                  0.652   beta-1,4-mannosyltransferase 
LOC100292213          0.641   PREDICTED: similar to mannosyltransferase, partial ...
LOC644974             0.411   hypothetical protein LOC644974 
MAN2B2                0.011   mannosidase, alpha, class 2B, member 2 
RGP1                  0.011   RGP1 retrograde golgi transport homolog 
PRKCA                 0.005   protein kinase C, alpha 
LRRC8C                0.005   leucine rich repeat containing 8 family, member C [H...
RASAL1                0.005   RAS protein activator like 1 
RBBP9                 0.005   retinoblastoma binding protein 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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