Guide to the Human Genome
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Name: LOC644974 Sequence: fasta or formatted (215aa) NCBI GI: 209954680
Description:

hypothetical protein LOC644974

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         14           2
 C cysteine            3.3          7           2
 D aspartate           6.0         13           1
 E glutamate           7.4         16           2
 F phenylalanine       5.6         12           2
 G glycine             5.6         12           1
 H histidine           3.7          8           1
 I isoleucine          1.9          4           1
 K lysine              4.2          9           1
 L leucine            14.0         30           2
 M methionine          1.9          4           1
 N asparagine          1.4          3           1
 P proline             6.0         13           2
 Q glutamine           3.7          8           1
 R arginine            5.6         12           1
 S serine              8.4         18           3
 T threonine           5.1         11           1
 V valine              6.5         14           2
 W tryptophan          1.4          3           1
 Y tyrosine            1.9          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC644974 
ALG1                  0.794   beta-1,4-mannosyltransferase 
LOC100292213          0.734   PREDICTED: similar to mannosyltransferase, partial ...
ALG1L                 0.359   asparagine-linked glycosylation 1-like 
DOCK2                 0.014   dedicator of cytokinesis 2 
ADNP                  0.007   activity-dependent neuroprotector 
ADNP                  0.007   activity-dependent neuroprotector 
ATF7                  0.007   activating transcription factor 7 isoform 3 
ATF7                  0.007   activating transcription factor 7 isoform 2 
ATF7                  0.007   activating transcription factor 7 isoform 1 
RBM20                 0.007   RNA binding motif protein 20 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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