Guide to the Human Genome
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Name: ALG1 Sequence: fasta or formatted (464aa) NCBI GI: 41350216
Description:

beta-1,4-mannosyltransferase

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         29           2
 C cysteine            3.0         14           2
 D aspartate           4.3         20           1
 E glutamate           5.6         26           2
 F phenylalanine       4.5         21           2
 G glycine             6.5         30           2
 H histidine           3.9         18           1
 I isoleucine          2.4         11           1
 K lysine              3.9         18           1
 L leucine            15.9         74           4
 M methionine          2.8         13           1
 N asparagine          3.2         15           2
 P proline             5.4         25           2
 Q glutamine           3.9         18           2
 R arginine            5.6         26           2
 S serine              6.5         30           3
 T threonine           3.4         16           1
 V valine              8.0         37           2
 W tryptophan          2.6         12           1
 Y tyrosine            2.4         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-1,4-mannosyltransferase 
LOC100292213          0.483   PREDICTED: similar to mannosyltransferase, partial ...
LOC644974             0.355   hypothetical protein LOC644974 
ALG1L                 0.255   asparagine-linked glycosylation 1-like 
RGP1                  0.006   RGP1 retrograde golgi transport homolog 
IFIT3                 0.005   interferon-induced protein with tetratricopeptide re...
IFIT3                 0.005   interferon-induced protein with tetratricopeptide re...
NTSR2                 0.005   neurotensin receptor 2 
LRRC8C                0.004   leucine rich repeat containing 8 family, member C [H...
DOCK2                 0.004   dedicator of cytokinesis 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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