Guide to the Human Genome
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Name: LRRC8A Sequence: fasta or formatted (810aa) NCBI GI: 62241040
Description:

leucine rich repeat containing 8 family, member A

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [810aa] leucine rich repeat containing 8 family, member A
alt mRNA [810aa] leucine rich repeat containing 8 family, member A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         35           2
 C cysteine            2.0         16           1
 D aspartate           4.9         40           1
 E glutamate           6.9         56           2
 F phenylalanine       4.3         35           1
 G glycine             3.2         26           2
 H histidine           2.5         20           1
 I isoleucine          7.2         58           2
 K lysine              6.9         56           2
 L leucine            14.9        121           2
 M methionine          1.6         13           1
 N asparagine          4.9         40           2
 P proline             4.7         38           2
 Q glutamine           3.1         25           1
 R arginine            5.4         44           2
 S serine              5.6         45           2
 T threonine           6.2         50           2
 V valine              5.7         46           2
 W tryptophan          1.7         14           2
 Y tyrosine            4.0         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 8 family, member A [H... 
LRRC8A                1.000   leucine rich repeat containing 8 family, member A [...
LRRC8A                1.000   leucine rich repeat containing 8 family, member A [...
LRRC8C                0.578   leucine rich repeat containing 8 family, member C [H...
LRRC8B                0.578   leucine rich repeat containing 8 family, member B [...
LRRC8B                0.578   leucine rich repeat containing 8 family, member B [H...
LRRC8D                0.560   leucine rich repeat containing 8 family, member D [...
LRRC8D                0.560   leucine rich repeat containing 8 family, member D [H...
LRRC8E                0.517   leucine rich repeat containing 8 family, member E [H...
SHOC2                 0.065   soc-2 suppressor of clear homolog 
LRRIQ4                0.061   leucine-rich repeats and IQ motif containing 4 [Hom...
SCRIB                 0.060   scribble isoform b 
SCRIB                 0.060   scribble isoform a 
LRRC1                 0.058   leucine rich repeat containing 1 
LRRC7                 0.058   leucine rich repeat containing 7 
ERBB2IP               0.056   ERBB2 interacting protein isoform 7 
ERBB2IP               0.056   ERBB2 interacting protein isoform 2 
RSU1                  0.052   ras suppressor protein 1 isoform 1 
LOC401387             0.048   leucine-rich repeat and death domain-containing pro...
LRRC40                0.048   leucine rich repeat containing 40 
MFHAS1                0.047   malignant fibrous histiocytoma amplified sequence 1...
FLII                  0.047   flightless I homolog 
LRRC28                0.047   leucine rich repeat containing 28 
LRDD                  0.047   leucine rich repeat and death domain containing prot...
LRDD                  0.047   leucine rich repeat and death domain containing prot...
RSU1                  0.043   ras suppressor protein 1 isoform 2 
LRRC39                0.042   leucine rich repeat containing 39 
GP5                   0.042   glycoprotein V (platelet) 
LRRC30                0.042   leucine rich repeat containing 30 
LRRC69                0.040   leucine rich repeat containing 69 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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