Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LRRC8D Sequence: fasta or formatted (858aa) NCBI GI: 34222199
Description:

leucine rich repeat containing 8 family, member D

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [858aa] leucine rich repeat containing 8 family, member D
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         43           2
 C cysteine            2.3         20           1
 D aspartate           4.4         38           1
 E glutamate           6.4         55           2
 F phenylalanine       5.0         43           1
 G glycine             2.9         25           1
 H histidine           3.3         28           1
 I isoleucine          6.9         59           2
 K lysine              8.0         69           2
 L leucine            13.1        112           2
 M methionine          2.3         20           2
 N asparagine          5.6         48           2
 P proline             4.9         42           2
 Q glutamine           4.1         35           2
 R arginine            3.0         26           1
 S serine              6.5         56           2
 T threonine           5.8         50           2
 V valine              6.5         56           2
 W tryptophan          1.0          9           2
 Y tyrosine            2.8         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 8 family, member D [H... 
LRRC8D                1.000   leucine rich repeat containing 8 family, member D [...
LRRC8A                0.530   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.530   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.530   leucine rich repeat containing 8 family, member A [...
LRRC8C                0.490   leucine rich repeat containing 8 family, member C [H...
LRRC8E                0.459   leucine rich repeat containing 8 family, member E [H...
LRRC8B                0.438   leucine rich repeat containing 8 family, member B [...
LRRC8B                0.438   leucine rich repeat containing 8 family, member B [H...
LRRC1                 0.056   leucine rich repeat containing 1 
SHOC2                 0.055   soc-2 suppressor of clear homolog 
LRRC7                 0.054   leucine rich repeat containing 7 
ERBB2IP               0.050   ERBB2 interacting protein isoform 7 
ERBB2IP               0.050   ERBB2 interacting protein isoform 2 
RSU1                  0.050   ras suppressor protein 1 isoform 1 
SCRIB                 0.050   scribble isoform b 
SCRIB                 0.050   scribble isoform a 
LRRIQ4                0.049   leucine-rich repeats and IQ motif containing 4 [Hom...
FLII                  0.047   flightless I homolog 
LOC401387             0.047   leucine-rich repeat and death domain-containing pro...
MFHAS1                0.046   malignant fibrous histiocytoma amplified sequence 1...
LRRC40                0.046   leucine rich repeat containing 40 
LGR5                  0.041   leucine-rich repeat-containing G protein-coupled rece...
RSU1                  0.039   ras suppressor protein 1 isoform 2 
LRRC28                0.039   leucine rich repeat containing 28 
LRRC39                0.039   leucine rich repeat containing 39 
LRDD                  0.038   leucine rich repeat and death domain containing prot...
LRDD                  0.038   leucine rich repeat and death domain containing prot...
LRCH2                 0.037   leucine-rich repeats and calponin homology (CH) dom...
LRCH4                 0.037   leucine-rich repeats and calponin homology (CH) doma...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press