Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 5902022
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902022 PL6 protein [Homo sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902022 PL6 protein [Homo sapiens] 691 0.0
gi|58743365 ring finger protein 157 [Homo sapiens] 32 1.1
gi|194328809 latent transforming growth factor beta binding prot... 31 1.9
gi|18497288 latent transforming growth factor beta binding prote... 31 1.9
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 31 1.9
gi|239745091 PREDICTED: hypothetical protein XP_002343358 [Homo ... 31 1.9
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 30 2.5
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 30 2.5
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 30 2.5
gi|171184451 centrosome-associated protein 350 [Homo sapiens] 30 2.5
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 30 3.2
gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens] 30 3.2
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 30 3.2
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 30 3.2
gi|41350201 epsin 1 isoform c [Homo sapiens] 30 4.2
gi|194248095 epsin 1 isoform b [Homo sapiens] 30 4.2
gi|194272148 epsin 1 isoform a [Homo sapiens] 30 4.2
gi|187171277 DNA-directed DNA polymerase gamma [Homo sapiens] 29 7.2
gi|4505937 DNA-directed DNA polymerase gamma [Homo sapiens] 29 7.2
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 29 7.2
gi|11321634 CD2-associated protein [Homo sapiens] 29 7.2
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 29 7.2
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 29 7.2
gi|19923242 zinc finger protein 161 homolog [Homo sapiens] 29 7.2
gi|219689126 zinc finger protein 161 homolog [Homo sapiens] 29 7.2
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 29 7.2
gi|237858660 olfactory receptor, family 6, subfamily P, member 1... 28 9.4
gi|118498362 kinectin 1 isoform b [Homo sapiens] 28 9.4
gi|118498356 kinectin 1 isoform a [Homo sapiens] 28 9.4
gi|118498368 kinectin 1 isoform c [Homo sapiens] 28 9.4
>gi|5902022 PL6 protein [Homo sapiens]
Length = 351
Score = 691 bits (1784), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MQRALPGARQHLGAILASASVVVKALCAAVLFLYLLSFAVDTGCLAVTPGYLFPPNFWIW 60
MQRALPGARQHLGAILASASVVVKALCAAVLFLYLLSFAVDTGCLAVTPGYLFPPNFWIW
Sbjct: 1 MQRALPGARQHLGAILASASVVVKALCAAVLFLYLLSFAVDTGCLAVTPGYLFPPNFWIW 60
Query: 61 TLATHGLMEQHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLT 120
TLATHGLMEQHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLT
Sbjct: 61 TLATHGLMEQHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLT 120
Query: 121 YMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLL 180
YMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLL
Sbjct: 121 YMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLL 180
Query: 181 RLATLLQSPALASYGFGLLSSWVYLRFYQRHSRGRGDMADHFAFATFFPEILQPVVGLLA 240
RLATLLQSPALASYGFGLLSSWVYLRFYQRHSRGRGDMADHFAFATFFPEILQPVVGLLA
Sbjct: 181 RLATLLQSPALASYGFGLLSSWVYLRFYQRHSRGRGDMADHFAFATFFPEILQPVVGLLA 240
Query: 241 NLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVED 300
NLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVED
Sbjct: 241 NLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVED 300
Query: 301 QSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAPPTL 351
QSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAPPTL
Sbjct: 301 QSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAPPTL 351
>gi|58743365 ring finger protein 157 [Homo sapiens]
Length = 679
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 263 GAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPL 322
G P S TIS P + + +++ + V S + EE G + SP
Sbjct: 497 GTPLSSTISSPEGPASSSLAQSVMSMASSQISTDTVSSMS-GSYIAPGTEEEGEALSSPQ 555
Query: 323 PSDKAPTPPGKGAAPESSLITFEAAP 348
P+ +AP+ G+G ES F P
Sbjct: 556 PASRAPSEEGEGLPAESPDSNFAGLP 581
>gi|194328809 latent transforming growth factor beta binding protein
3 isoform 1 [Homo sapiens]
Length = 1303
Score = 30.8 bits (68), Expect = 1.9
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 299 EDQSIWPSMDDDEEESGAKVDSPLPSDKA-----PTPPGKGAAPESSLITFEAAPPTL 351
E S P +D EEE G DSP+ +++ PT A P LI+ +PPT+
Sbjct: 495 ESPSQAPPPEDTEEERGVTTDSPVSEERSVQQSHPTATTTPARPYPELIS-RPSPPTM 551
>gi|18497288 latent transforming growth factor beta binding protein
3 isoform 2 [Homo sapiens]
Length = 1256
Score = 30.8 bits (68), Expect = 1.9
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 299 EDQSIWPSMDDDEEESGAKVDSPLPSDKA-----PTPPGKGAAPESSLITFEAAPPTL 351
E S P +D EEE G DSP+ +++ PT A P LI+ +PPT+
Sbjct: 495 ESPSQAPPPEDTEEERGVTTDSPVSEERSVQQSHPTATTTPARPYPELIS-RPSPPTM 551
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 308 DDDEEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAP 348
DDD E + PLPS + T AAPE + + AAP
Sbjct: 1388 DDDHEGGPVEGPGPLPSPASATATAAPAAPEDAATSAAAAP 1428
>gi|239745091 PREDICTED: hypothetical protein XP_002343358 [Homo
sapiens]
Length = 216
Score = 30.8 bits (68), Expect = 1.9
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 263 GAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSIWP--------SMDDDEEES 314
GAP T++ P T P R +A N+ + R D WP + + + +
Sbjct: 49 GAPPLPTLA-PHTQPPGPLRDHSAQARATNQVMTRQRD---WPRNHLQLQTGQEAEFQNT 104
Query: 315 GAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAPPT 350
G+++ P S K PP A P PT
Sbjct: 105 GSQLSQPFESLKIAVPPDTAAVPAKPATPATPGSPT 140
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 30.4 bits (67), Expect = 2.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 283 RRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTP 330
R Q +K ER ++V+++ I P + DEE P P+ KAP P
Sbjct: 567 RLQELVKLFKERTEKVKEKLIDPDVTSDEES-----PKPSPAKKAPEP 609
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 30.4 bits (67), Expect = 2.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 311 EEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAP 348
+EES P SD P+PPG AAP T+ + P
Sbjct: 1577 QEESTTFQSWPSSSDTTPSPPGTTAAPVEVSTTYHSRP 1614
Score = 30.4 bits (67), Expect = 2.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 311 EEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAP 348
+EES P SD P+PPG AAP T+ + P
Sbjct: 3134 QEESTTFQSWPSSSDTTPSPPGTTAAPVEVSTTYHSRP 3171
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 30.4 bits (67), Expect = 2.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 311 EEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAP 348
+EES P SD P+PPG AAP T+ + P
Sbjct: 1064 QEESTTFQSWPSSSDTTPSPPGTTAAPVEVSTTYHSRP 1101
>gi|171184451 centrosome-associated protein 350 [Homo sapiens]
Length = 3117
Score = 30.4 bits (67), Expect = 2.5
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 278 QDAERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPLPSD---KAPTPPGKG 334
++ E+ RQ +K L E+LK + + DDD +++ K SP P+D ++P+P
Sbjct: 1779 EEIEKIRQTTIK-LQEKLKSAGESKLDSHSDDDTKDN--KATSPGPTDLETRSPSPISIS 1835
Query: 335 AAPESSLI 342
++ SS++
Sbjct: 1836 SSETSSIM 1843
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 30.0 bits (66), Expect = 3.2
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 24/108 (22%)
Query: 255 KTVKRYDVGAPSSITISL-------PGTDPQDAERRRQLALKALN-ERLKRVEDQSIWPS 306
+TV D G+ S+ S P +P E + A+N +R KR E + + S
Sbjct: 1035 RTVPPGDPGSDSTTCSSAKSKGSWAPKKEPYAREMLAISFISAVNRKRKKRREARGLGSS 1094
Query: 307 MDDDEEESGAK-------------VDSPLPSDKAPTPPGK---GAAPE 338
DDD E+ K PLP AP PG+ AAPE
Sbjct: 1095 TDDDSEQEAHKPGAGATAPGTQERPQGPLPGAVAPEAPGRLSPPAAPE 1142
>gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens]
Length = 1740
Score = 30.0 bits (66), Expect = 3.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 263 GAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPL 322
G S++ +S T +D+ R R +L NER KR++ S+ +E S A+ D L
Sbjct: 915 GLRSNVLLSFDDTPEKDSFRARSTSL---NERPKRIQTSLTSASLGSADENSVAQADDSL 971
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 30.0 bits (66), Expect = 3.2
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 278 QDAERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGKGAAP 337
QD R++ LK + + VE + ++P + + + ++ P D APTPPG +
Sbjct: 458 QDVLRQKLYKLK----QEQGVESEPLFPILKQEPQSPSRSLE---PEDAAPTPPGPSSEG 510
Query: 338 ESSLITFEAAPPT 350
+ + A PT
Sbjct: 511 GPAEAEVDGATPT 523
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 30.0 bits (66), Expect = 3.2
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 278 QDAERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGKGAAP 337
QD R++ LK + + VE + ++P + + + ++ P D APTPPG +
Sbjct: 458 QDVLRQKLYKLK----QEQGVESEPLFPILKQEPQSPSRSLE---PEDAAPTPPGPSSEG 510
Query: 338 ESSLITFEAAPPT 350
+ + A PT
Sbjct: 511 GPAEAEVDGATPT 523
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 29.6 bits (65), Expect = 4.2
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 20/123 (16%)
Query: 244 HSLLVKVKICQK-TVKRYDVGA--PSSITISLPGTDPQDAERRRQLALKALNE------R 294
H+L K K+ Q T VG+ P + P + ++ E + QLAL E R
Sbjct: 146 HALKTKEKLAQTATASSAAVGSGPPPEAEQAWPQSSGEE-ELQLQLALAMSKEEADQEER 204
Query: 295 LKRVEDQSIWPSMDDDEEESGAKVDSPL---------PSDKAPTPPGKGAAPESSLITFE 345
++R +D + ++++ + E+G K +S L P+ T P G AP ++ +
Sbjct: 205 IRRGDDLRLQMAIEESKRETGGKEESSLMDLADVFTAPAPAPTTDPWGGPAPMAAAVP-T 263
Query: 346 AAP 348
AAP
Sbjct: 264 AAP 266
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 29.6 bits (65), Expect = 4.2
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 273 PGTDPQDAERRRQLALKALNE------RLKRVEDQSIWPSMDDDEEESGAKVDSPL---- 322
P P+D + + QLAL E R++R +D + ++++ + E+G K +S L
Sbjct: 203 PSCGPED-DAQLQLALSLSREEHDKEERIRRGDDLRLQMAIEESKRETGGKEESSLMDLA 261
Query: 323 -----PSDKAPTPPGKGAAPESSLITFEAAP 348
P+ T P G AP ++ + AAP
Sbjct: 262 DVFTAPAPAPTTDPWGGPAPMAAAVP-TAAP 291
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 29.6 bits (65), Expect = 4.2
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 20/123 (16%)
Query: 244 HSLLVKVKICQK-TVKRYDVGA--PSSITISLPGTDPQDAERRRQLALKALNE------R 294
H+L K K+ Q T VG+ P + P + ++ E + QLAL E R
Sbjct: 257 HALKTKEKLAQTATASSAAVGSGPPPEAEQAWPQSSGEE-ELQLQLALAMSKEEADQEER 315
Query: 295 LKRVEDQSIWPSMDDDEEESGAKVDSPL---------PSDKAPTPPGKGAAPESSLITFE 345
++R +D + ++++ + E+G K +S L P+ T P G AP ++ +
Sbjct: 316 IRRGDDLRLQMAIEESKRETGGKEESSLMDLADVFTAPAPAPTTDPWGGPAPMAAAVP-T 374
Query: 346 AAP 348
AAP
Sbjct: 375 AAP 377
>gi|187171277 DNA-directed DNA polymerase gamma [Homo sapiens]
Length = 1239
Score = 28.9 bits (63), Expect = 7.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 245 SLLVKVKICQKTVKRYDVGAPSS-ITISLPGTDPQDAERRRQ 285
S L+ K+ TV V AP ++ S+P +DP D +RRRQ
Sbjct: 2 SRLLWRKVAGATVGPGPVPAPGRWVSSSVPASDPSDGQRRRQ 43
>gi|4505937 DNA-directed DNA polymerase gamma [Homo sapiens]
Length = 1239
Score = 28.9 bits (63), Expect = 7.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 245 SLLVKVKICQKTVKRYDVGAPSS-ITISLPGTDPQDAERRRQ 285
S L+ K+ TV V AP ++ S+P +DP D +RRRQ
Sbjct: 2 SRLLWRKVAGATVGPGPVPAPGRWVSSSVPASDPSDGQRRRQ 43
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 28.9 bits (63), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 321 PLPSDKAPTPPGKGAAPESSLITFEAAPPT 350
P PS P PP A PE++ AAPPT
Sbjct: 170 PTPSATTPAPPSSSAPPETT-----AAPPT 194
>gi|11321634 CD2-associated protein [Homo sapiens]
Length = 639
Score = 28.9 bits (63), Expect = 7.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 317 KVDSPLPSDKAPTPPGKGAAPESSLITFE 345
++D P K P PP K AP+ LI E
Sbjct: 330 ELDKDFPKPKKPPPPAKAPAPKPELIAAE 358
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 28.9 bits (63), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 321 PLPSDKAPTPPGKGAAPESSLITFEAAPPT 350
P PS P PP A PE++ AAPPT
Sbjct: 170 PTPSATTPAPPSSSAPPETT-----AAPPT 194
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 28.9 bits (63), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 321 PLPSDKAPTPPGKGAAPESSLITFEAAPPT 350
P PS P PP A PE++ AAPPT
Sbjct: 170 PTPSATTPAPPSSSAPPETT-----AAPPT 194
>gi|19923242 zinc finger protein 161 homolog [Homo sapiens]
Length = 449
Score = 28.9 bits (63), Expect = 7.2
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 306 SMDDDEEESGAKVDSPLPSDKAPTPPGK--GAAPESSLITFEA 346
+ DDD EE G + DSP TPP + G +P ++L EA
Sbjct: 158 TQDDDVEEIGDQDDSPSDDTVEGTPPSQEDGKSPTTTLRVQEA 200
>gi|219689126 zinc finger protein 161 homolog [Homo sapiens]
Length = 449
Score = 28.9 bits (63), Expect = 7.2
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 306 SMDDDEEESGAKVDSPLPSDKAPTPPGK--GAAPESSLITFEA 346
+ DDD EE G + DSP TPP + G +P ++L EA
Sbjct: 158 TQDDDVEEIGDQDDSPSDDTVEGTPPSQEDGKSPTTTLRVQEA 200
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 28.9 bits (63), Expect = 7.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 296 KRVEDQSIWPSMDDDEEESGAKVDSPLPSD----KAPTPPG--------KGAAPESSLIT 343
K ED S+ P + E +G +P+P + AP PPG +G AP+ +
Sbjct: 89 KPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAA-- 146
Query: 344 FEAAPPT 350
A+PPT
Sbjct: 147 -PASPPT 152
>gi|237858660 olfactory receptor, family 6, subfamily P, member 1
[Homo sapiens]
Length = 317
Score = 28.5 bits (62), Expect = 9.4
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 28/155 (18%)
Query: 76 AISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLT------YMASFNLVY 129
A+ + T+ +A L P++ L L F + ++V + A LT Y+ +Y
Sbjct: 43 ALIVFTIWLAPSLHRPMYFFLGHLSFLELWYINVTIPRLLAAFLTQDGRVSYVGCMTQLY 102
Query: 130 LFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVR--VSVMPMLLLALLLLLRLATLLQ 187
F +AL T +CV+L V +++ LL L+ LAT L
Sbjct: 103 FF---------------IALACT--ECVLLAVMAYDRYLAICGPLLYPSLMPSSLATRL- 144
Query: 188 SPALASYGFGLLSSWVYLRFYQRHSRGRGDMADHF 222
A AS+G G SS + L F + S ++ +HF
Sbjct: 145 --AAASWGSGFFSSMMKLLFISQLSYCGPNIINHF 177
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 28.5 bits (62), Expect = 9.4
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 261 DVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDS 320
D AP + + + ++ +++ + L E++ + D S P G KV+
Sbjct: 95 DQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIKESDASKIP---------GKKVE- 144
Query: 321 PLPSDKAPTPPGKGAA 336
P+P K PTPP + AA
Sbjct: 145 PVPVTKQPTPPSEAAA 160
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 28.5 bits (62), Expect = 9.4
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 261 DVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDS 320
D AP + + + ++ +++ + L E++ + D S P G KV+
Sbjct: 95 DQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIKESDASKIP---------GKKVE- 144
Query: 321 PLPSDKAPTPPGKGAA 336
P+P K PTPP + AA
Sbjct: 145 PVPVTKQPTPPSEAAA 160
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 28.5 bits (62), Expect = 9.4
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 261 DVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDS 320
D AP + + + ++ +++ + L E++ + D S P G KV+
Sbjct: 95 DQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIKESDASKIP---------GKKVE- 144
Query: 321 PLPSDKAPTPPGKGAA 336
P+P K PTPP + AA
Sbjct: 145 PVPVTKQPTPPSEAAA 160
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,616,675
Number of Sequences: 37866
Number of extensions: 607079
Number of successful extensions: 3578
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3528
Number of HSP's gapped (non-prelim): 77
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.