Guide to the Human Genome
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Name: LTBP3 Sequence: fasta or formatted (1256aa) NCBI GI: 18497288
Description:

latent transforming growth factor beta binding protein 3 isoform 2

Referenced in:

Extracellular Matrix
TGF-beta Family

Other entries for this name:
alt prot [1303aa] latent transforming growth factor beta binding protein 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         77           2
 C cysteine            9.6        120           3
 D aspartate           5.3         66           2
 E glutamate           6.1         77           3
 F phenylalanine       2.3         29           1
 G glycine            11.5        144           4
 H histidine           3.1         39           2
 I isoleucine          2.4         30           1
 K lysine              2.8         35           2
 L leucine             6.4         81          10
 M methionine          0.8         10           1
 N asparagine          3.3         42           2
 P proline            10.0        125           3
 Q glutamine           5.0         63           2
 R arginine            6.3         79           3
 S serine              7.0         88           2
 T threonine           4.1         52           3
 V valine              4.9         61           3
 W tryptophan          0.6          8           1
 Y tyrosine            2.4         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   latent transforming growth factor beta binding prote... 
LTBP3                 0.992   latent transforming growth factor beta binding prot...
LTBP1                 0.346   latent transforming growth factor beta binding prote...
LTBP1                 0.346   latent transforming growth factor beta binding prote...
LTBP2                 0.265   latent transforming growth factor beta binding protei...
LTBP4                 0.214   latent transforming growth factor beta binding prot...
LTBP4                 0.205   latent transforming growth factor beta binding prot...
LTBP4                 0.205   latent transforming growth factor beta binding prot...
FBN3                  0.155   fibrillin 3 precursor 
FBN1                  0.152   fibrillin 1 precursor 
FBN2                  0.152   fibrillin 2 precursor 
HMCN1                 0.070   hemicentin 1 
MEGF6                 0.067   EGF-like-domain, multiple 3 
FBLN2                 0.067   fibulin 2 isoform b precursor 
NOTCH1                0.066   notch1 preproprotein 
NOTCH3                0.065   Notch homolog 3 
NOTCH4                0.065   notch4 preproprotein 
FBLN1                 0.065   fibulin 1 isoform C precursor 
FBLN2                 0.064   fibulin 2 isoform a precursor 
FBLN1                 0.064   fibulin 1 isoform D 
FBLN1                 0.064   fibulin 1 isoform B precursor 
FBLN1                 0.064   fibulin 1 isoform A precursor 
NOTCH2                0.062   notch 2 preproprotein 
EFEMP2                0.060   EGF-containing fibulin-like extracellular matrix pr...
SCUBE3                0.059   signal peptide, CUB domain, EGF-like 3 
SCUBE1                0.058   signal peptide, CUB domain, EGF-like 1 
HMCN2                 0.057   PREDICTED: hemicentin 2 
HMCN2                 0.057   PREDICTED: hemicentin 2 
HMCN2                 0.057   PREDICTED: hemicentin 2 
FBLN5                 0.055   fibulin 5 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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