BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5803185 synaptophysin-like 1 isoform a [Homo sapiens] (259 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|5803185 synaptophysin-like 1 isoform a [Homo sapiens] 533 e-152 gi|33239443 synaptophysin-like 1 isoform b [Homo sapiens] 499 e-141 gi|27764867 synaptophysin [Homo sapiens] 209 2e-54 gi|194018518 synaptoporin isoform 1 [Homo sapiens] 201 4e-52 gi|105554421 mitsugumin 29 [Homo sapiens] 198 3e-51 gi|21389481 synaptoporin isoform 2 [Homo sapiens] 185 3e-47 gi|54792073 mucolipin 2 [Homo sapiens] 31 0.94 gi|45594240 limbic system-associated membrane protein [Homo sapi... 30 1.6 gi|145611446 tumor protein p53 inducible protein 5 [Homo sapiens] 30 2.7 gi|6631112 synaptogyrin 3 [Homo sapiens] 29 4.7 gi|119964726 insulin-like growth factor 2 receptor precursor [Ho... 28 6.1 gi|14140236 solute carrier family 5 (low affinity glucose cotran... 28 6.1 gi|169203160 PREDICTED: hypothetical protein [Homo sapiens] 28 8.0 gi|169203656 PREDICTED: hypothetical protein [Homo sapiens] 28 8.0 gi|169202387 PREDICTED: hypothetical protein [Homo sapiens] 28 8.0 >gi|5803185 synaptophysin-like 1 isoform a [Homo sapiens] Length = 259 Score = 533 bits (1373), Expect = e-152 Identities = 259/259 (100%), Positives = 259/259 (100%) Query: 1 MAPNIYLVRQRISRLGQRMSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEI 60 MAPNIYLVRQRISRLGQRMSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEI Sbjct: 1 MAPNIYLVRQRISRLGQRMSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEI 60 Query: 61 QVNCPPAVTENKTVTATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVT 120 QVNCPPAVTENKTVTATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVT Sbjct: 61 QVNCPPAVTENKTVTATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVT 120 Query: 121 FAVFVFLYCIAALLLYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKI 180 FAVFVFLYCIAALLLYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKI Sbjct: 121 FAVFVFLYCIAALLLYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKI 180 Query: 181 ATGHNIIDELPPCKKKAVLCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHS 240 ATGHNIIDELPPCKKKAVLCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHS Sbjct: 181 ATGHNIIDELPPCKKKAVLCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHS 240 Query: 241 PSNTSAPHSQGGIPPPTGI 259 PSNTSAPHSQGGIPPPTGI Sbjct: 241 PSNTSAPHSQGGIPPPTGI 259 >gi|33239443 synaptophysin-like 1 isoform b [Homo sapiens] Length = 241 Score = 499 bits (1284), Expect = e-141 Identities = 241/241 (100%), Positives = 241/241 (100%) Query: 19 MSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATF 78 MSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATF Sbjct: 1 MSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATF 60 Query: 79 GYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYVG 138 GYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYVG Sbjct: 61 GYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYVG 120 Query: 139 YTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATGHNIIDELPPCKKKAV 198 YTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATGHNIIDELPPCKKKAV Sbjct: 121 YTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATGHNIIDELPPCKKKAV 180 Query: 199 LCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNTSAPHSQGGIPPPTG 258 LCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNTSAPHSQGGIPPPTG Sbjct: 181 LCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNTSAPHSQGGIPPPTG 240 Query: 259 I 259 I Sbjct: 241 I 241 >gi|27764867 synaptophysin [Homo sapiens] Length = 313 Score = 209 bits (532), Expect = 2e-54 Identities = 106/243 (43%), Positives = 150/243 (61%), Gaps = 7/243 (2%) Query: 15 LGQRMSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTV 74 + Q ++G Q + +KEPLGF+KVL+W+ +IFAFATCG + G+ ++ V+C + ++ Sbjct: 10 VNQLVAGGQFRV--VKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESDLSI 67 Query: 75 TATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAALL 134 F YPFRL++ F P C L+GDYSSSA+F+VT AVF FLY + AL Sbjct: 68 EVEFEYPFRLHQVYFDAPT----CRGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMGALA 123 Query: 135 LYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATG-HNIIDELPPC 193 Y+ + Y ++ K PM+DF+ T V F+WLVS+SAWAK L+D+K+AT NII E+P C Sbjct: 124 TYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVC 183 Query: 194 KKKAVLCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNTSAPHSQGGI 253 ++ C LN SV+FGFLN++LW GN WFV+KET +P + P + Sbjct: 184 RQTGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAPEKQ 243 Query: 254 PPP 256 P P Sbjct: 244 PAP 246 >gi|194018518 synaptoporin isoform 1 [Homo sapiens] Length = 285 Score = 201 bits (512), Expect = 4e-52 Identities = 104/235 (44%), Positives = 149/235 (63%), Gaps = 15/235 (6%) Query: 29 LKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATFGYPFRLNEAS 88 LKEPL F++ LE + +IFAFATCGG+ G + V+C N ++ F YPFRL++ + Sbjct: 16 LKEPLAFLRALELLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIAFAYPFRLHQVT 75 Query: 89 FQPPPGVNICDVNWKDYV-LIGDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTSLYLDSR 147 F+ P C+ + + LIGD SSSA+F+VT AVF FLY +AA ++Y+ + + Y ++ Sbjct: 76 FEVPT----CEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENN 131 Query: 148 KLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATG-HNIIDELPPCKKKAVLCYFGSVT 206 + P+IDF+VT+V +FLWLV +SAWAK L+D+K+AT ++ + CK+ + C Sbjct: 132 RGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSP 191 Query: 207 SMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNT---------SAPHSQGG 252 M SLN SV+FGFLN ILW GN WFV+KET HS S+ ++QGG Sbjct: 192 VMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSYNQGG 246 >gi|105554421 mitsugumin 29 [Homo sapiens] Length = 272 Score = 198 bits (504), Expect = 3e-51 Identities = 92/214 (42%), Positives = 139/214 (64%), Gaps = 7/214 (3%) Query: 29 LKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATFGYPFRLNEAS 88 L+EPLGFIKVL+W+ +IFAF +CG + G+T V C + ++ FGYPFRL+ Sbjct: 31 LEEPLGFIKVLQWLFAIFAFGSCGSYSGETGAMVRCNNEAKDVSSIIVAFGYPFRLHRIQ 90 Query: 89 FQPPPGVNICDV--NWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTSLYLDS 146 ++ P +CD + K L+GD+S+ A+F+VT +F F Y +AAL++Y+ + +LY ++ Sbjct: 91 YEMP----LCDEESSSKTMHLMGDFSAPAEFFVTLGIFSFFYTMAALVIYLRFHNLYTEN 146 Query: 147 RKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIAT-GHNIIDELPPCKKKAVLCYFGSV 205 ++ P++DF VT+ TF WLV+ +AW K LTD+K AT ++ + C + +C G+ Sbjct: 147 KRFPLVDFCVTVSFTFFWLVAAAAWGKGLTDVKGATRPSSLTAAMSVCHGEEAVCSAGAT 206 Query: 206 TSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLH 239 SMG N+SV+FGF+N LW GN WFV+KET H Sbjct: 207 PSMGLANISVLFGFINFFLWAGNCWFVFKETPWH 240 >gi|21389481 synaptoporin isoform 2 [Homo sapiens] Length = 265 Score = 185 bits (470), Expect = 3e-47 Identities = 96/220 (43%), Positives = 138/220 (62%), Gaps = 15/220 (6%) Query: 44 SIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATFGYPFRLNEASFQPPPGVNICDVNWK 103 +IFAFATCGG+ G + V+C N ++ F YPFRL++ +F+ P C+ + Sbjct: 11 AIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIAFAYPFRLHQVTFEVPT----CEGKER 66 Query: 104 DYV-LIGDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTSLYLDSRKLPMIDFVVTLVATF 162 + LIGD SSSA+F+VT AVF FLY +AA ++Y+ + + Y ++ + P+IDF+VT+V +F Sbjct: 67 QKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIVTVVFSF 126 Query: 163 LWLVSTSAWAKALTDIKIATG-HNIIDELPPCKKKAVLCYFGSVTSMGSLNVSVIFGFLN 221 LWLV +SAWAK L+D+K+AT ++ + CK+ + C M SLN SV+FGFLN Sbjct: 127 LWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLNTSVVFGFLN 186 Query: 222 MILWGGNAWFVYKETSLHSPSNT---------SAPHSQGG 252 ILW GN WFV+KET HS S+ ++QGG Sbjct: 187 FILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSYNQGG 226 >gi|54792073 mucolipin 2 [Homo sapiens] Length = 566 Score = 31.2 bits (69), Expect = 0.94 Identities = 16/46 (34%), Positives = 24/46 (52%) Query: 103 KDYVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTSLYLDSRK 148 KD + G +AQ+ + F FV + C+A+L+L L L RK Sbjct: 275 KDLNIFGSTQKNAQYVLVFDAFVIVICLASLILCTRSIVLALRLRK 320 >gi|45594240 limbic system-associated membrane protein [Homo sapiens] Length = 338 Score = 30.4 bits (67), Expect = 1.6 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 57 QTEIQVNCPPAVTENKTVTATFGYPFRLN-EASFQPPP 93 Q ++ VN PP +TE+K+ AT G L EAS P P Sbjct: 210 QVKVTVNYPPTITESKSNEATTGRQASLKCEASAVPAP 247 >gi|145611446 tumor protein p53 inducible protein 5 [Homo sapiens] Length = 782 Score = 29.6 bits (65), Expect = 2.7 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 12/112 (10%) Query: 36 IKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTE-NKTVTATFGYPFR----LNEASFQ 90 I VL IA+ A F + + P + E N TV GY + FQ Sbjct: 605 IGVLAVIANGMVIAFTSEFIPRVVYKYRYSPCLKEGNSTVDCLKGYVNHSLSVFHTKDFQ 664 Query: 91 PPPGV----NICDVNWKDYVLIGDYSSSAQFYVTFAV---FVFLYCIAALLL 135 P G+ N+ ++DY DY+ S QF+ A+ FV L+ AL + Sbjct: 665 DPDGIEGSENVTLCRYRDYRNPPDYNFSEQFWFLLAIRLAFVILFEHVALCI 716 >gi|6631112 synaptogyrin 3 [Homo sapiens] Length = 229 Score = 28.9 bits (63), Expect = 4.7 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Query: 112 SSSAQFYVTFAVFVFLYCIAALLLYVGY--TSLYLDSRKLPMIDFVVTLVATFLWLVS-- 167 + + +F V + FL C A LLL V + S D R+ ++D + + +FLW V Sbjct: 65 AGACRFGVALGLGAFLACAAFLLLDVRFQQISSVRDRRRAVLLDLGFSGLWSFLWFVGFC 124 Query: 168 --TSAWAK 173 T+ W + Sbjct: 125 FLTNQWQR 132 >gi|119964726 insulin-like growth factor 2 receptor precursor [Homo sapiens] Length = 2491 Score = 28.5 bits (62), Expect = 6.1 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 20 SGFQINLNPLKEPLGFIKVLEWIASIFAFATCG 52 SGF NLNPL G+ + I IF F CG Sbjct: 941 SGFVFNLNPLNSSQGY--NVSGIGKIFMFNVCG 971 >gi|14140236 solute carrier family 5 (low affinity glucose cotransporter), member 4 [Homo sapiens] Length = 659 Score = 28.5 bits (62), Expect = 6.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 46 FAFATCGGFKGQTEIQVNCPPAVTENKTVT 75 FAF GG++ TE VN P+V E +T Sbjct: 221 FAFNEVGGYESFTEKYVNATPSVVEGDNLT 250 >gi|169203160 PREDICTED: hypothetical protein [Homo sapiens] Length = 638 Score = 28.1 bits (61), Expect = 8.0 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 13/132 (9%) Query: 74 VTATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAAL 133 VT +GY N F +N W DY + S + VTF++ F+ Sbjct: 270 VTFPYGYHAGFNHG-FNCAEAINFATPRWIDYGKVASQCSCGEARVTFSMDAFV-----R 323 Query: 134 LLYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATG-HNIIDELPP 192 +L L+ + L ++D++ VA S W + + + A G ++ + + Sbjct: 324 ILQPESYELWKHRQDLTVVDYMEPRVAE---SQEPSNWREDIALRRAALGLRHLRNHITS 380 Query: 193 CKKKAV---LCY 201 C + V LCY Sbjct: 381 CPTRTVAPRLCY 392 >gi|169203656 PREDICTED: hypothetical protein [Homo sapiens] Length = 638 Score = 28.1 bits (61), Expect = 8.0 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 13/132 (9%) Query: 74 VTATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAAL 133 VT +GY N F +N W DY + S + VTF++ F+ Sbjct: 270 VTFPYGYHAGFNHG-FNCAEAINFATPRWIDYGKVASQCSCGEARVTFSMDAFV-----R 323 Query: 134 LLYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATG-HNIIDELPP 192 +L L+ + L ++D++ VA S W + + + A G ++ + + Sbjct: 324 ILQPESYELWKHRQDLTVVDYMEPRVAE---SQEPSNWREDIALRRAALGLRHLRNHITS 380 Query: 193 CKKKAV---LCY 201 C + V LCY Sbjct: 381 CPTRTVAPRLCY 392 >gi|169202387 PREDICTED: hypothetical protein [Homo sapiens] Length = 638 Score = 28.1 bits (61), Expect = 8.0 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 13/132 (9%) Query: 74 VTATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAAL 133 VT +GY N F +N W DY + S + VTF++ F+ Sbjct: 270 VTFPYGYHAGFNHG-FNCAEAINFATPRWIDYGKVASQCSCGEARVTFSMDAFV-----R 323 Query: 134 LLYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATG-HNIIDELPP 192 +L L+ + L ++D++ VA S W + + + A G ++ + + Sbjct: 324 ILQPESYELWKHRQDLTVVDYMEPRVAE---SQEPSNWREDIALRRAALGLRHLRNHITS 380 Query: 193 CKKKAV---LCY 201 C + V LCY Sbjct: 381 CPTRTVAPRLCY 392 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.324 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,593,539 Number of Sequences: 37866 Number of extensions: 431089 Number of successful extensions: 1376 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1358 Number of HSP's gapped (non-prelim): 16 length of query: 259 length of database: 18,247,518 effective HSP length: 100 effective length of query: 159 effective length of database: 14,460,918 effective search space: 2299285962 effective search space used: 2299285962 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.