SYNPR 13124

Name: SYNPR	Sequence: fasta or formatted (265aa)		NCBI GI: 21389481
Description: synaptoporin isoform 2		Referenced in: Synapses
Other entries for this name: alt prot [285aa] synaptoporin isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 19 2 C cysteine 2.3 6 1 D aspartate 3.4 9 1 E glutamate 3.8 10 1 F phenylalanine 8.7 23 2 G glycine 7.5 20 2 H histidine 1.5 4 1 I isoleucine 4.5 12 1 K lysine 4.2 11 1 L leucine 7.9 21 3 M methionine 2.3 6 1 N asparagine 4.5 12 2 P proline 4.2 11 1 Q glutamine 4.5 12 2 R arginine 2.3 6 1 S serine 12.5 33 4 T threonine 5.3 14 1 V valine 7.9 21 2 W tryptophan 1.9 5 1 Y tyrosine 3.8 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptoporin isoform 2 SYNPR 0.967 synaptoporin isoform 1 SYP 0.551 synaptophysin SYPL2 0.383 mitsugumin 29 SYPL1 0.311 synaptophysin-like 1 isoform b SYPL1 0.311 synaptophysin-like 1 isoform a EWSR1 0.027 Ewing sarcoma breakpoint region 1 isoform 5 EWSR1 0.027 Ewing sarcoma breakpoint region 1 isoform 4 EWSR1 0.027 Ewing sarcoma breakpoint region 1 isoform 3 EWSR1 0.027 Ewing sarcoma breakpoint region 1 isoform 1 EWSR1 0.027 Ewing sarcoma breakpoint region 1 isoform 2 SYNGR1 0.019 synaptogyrin 1 isoform 1a SMO 0.019 smoothened SYNGR2 0.019 synaptogyrin 2 TGFBR3 0.016 transforming growth factor, beta receptor III FLG2 0.016 filaggrin family member 2 FZD6 0.014 frizzled 6 SYNGR1 0.014 synaptogyrin 1 isoform 1c SYNGR1 0.014 synaptogyrin 1 isoform 1b KDR 0.014 kinase insert domain receptor precursor HRNR 0.012 hornerin SYNGR3 0.012 synaptogyrin 3 ABCA5 0.010 ATP-binding cassette, sub-family A , member 5 ABCA5 0.010 ATP-binding cassette, sub-family A , member 5 FUS 0.010 fusion (involved in t(12;16) in malignant liposarcoma... ZNF806 0.010 PREDICTED: zinc finger protein 806 ZNF806 0.010 PREDICTED: zinc finger protein 806 ZNF806 0.010 PREDICTED: zinc finger protein 806 ABCB4 0.008 ATP-binding cassette, subfamily B, member 4 isoform B... ABCB4 0.008 ATP-binding cassette, subfamily B, member 4 isoform C... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.