SYP 24516

Name: SYP	Sequence: fasta or formatted (313aa)		NCBI GI: 27764867
Description: synaptophysin		Referenced in: Synapses
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.6 27 2 C cysteine 1.6 5 1 D aspartate 4.8 15 1 E glutamate 4.2 13 1 F phenylalanine 7.3 23 2 G glycine 12.5 39 2 H histidine 0.3 1 1 I isoleucine 1.6 5 2 K lysine 3.8 12 1 L leucine 8.0 25 3 M methionine 2.6 8 1 N asparagine 3.5 11 2 P proline 6.7 21 2 Q glutamine 5.8 18 2 R arginine 2.2 7 1 S serine 6.4 20 3 T threonine 4.8 15 2 V valine 8.3 26 2 W tryptophan 1.9 6 1 Y tyrosine 5.1 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptophysin SYNPR 0.502 synaptoporin isoform 1 SYNPR 0.453 synaptoporin isoform 2 SYPL2 0.324 mitsugumin 29 SYPL1 0.293 synaptophysin-like 1 isoform a SYPL1 0.292 synaptophysin-like 1 isoform b WDR33 0.045 WD repeat domain 33 isoform 1 GRINA 0.043 glutamate receptor, ionotropic, N-methyl D-aspartate... GRINA 0.043 glutamate receptor, ionotropic, N-methyl D-aspartate... COL9A3 0.035 alpha 3 type IX collagen COL3A1 0.033 collagen type III alpha 1 preproprotein HNRNPA1 0.030 heterogeneous nuclear ribonucleoprotein A1 isoform b... COL28A1 0.030 collagen, type XXVIII precursor COL5A2 0.029 alpha 2 type V collagen preproprotein PEF1 0.029 penta-EF-hand domain containing 1 COL4A3 0.029 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.029 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.029 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.029 alpha 3 type IV collagen isoform 1 precursor COL8A1 0.029 alpha 1 type VIII collagen precursor COL8A1 0.029 alpha 1 type VIII collagen precursor EMID1 0.027 EMI domain containing 1 KRT77 0.027 keratin 77 COL11A2 0.027 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.027 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.027 collagen, type XI, alpha 2 isoform 1 preproprotein ... HNRNPA1 0.027 heterogeneous nuclear ribonucleoprotein A1 isoform a ... FUS 0.027 fusion (involved in t(12;16) in malignant liposarcoma... COL10A1 0.027 type X collagen alpha 1 precursor COL4A1 0.026 alpha 1 type IV collagen preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.