Guide to the Human Genome
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Name: MALT1 Sequence: fasta or formatted (824aa) NCBI GI: 5803078
Description:

mucosa associated lymphoid tissue lymphoma translocation protein 1 isoform a

Referenced in:

B cells

Other entries for this name:
alt prot [813aa] mucosa associated lymphoid tissue lymphoma translocation protein ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         47           2
 C cysteine            3.3         27           2
 D aspartate           5.9         49           2
 E glutamate           7.0         58           2
 F phenylalanine       3.9         32           1
 G glycine             5.9         49           2
 H histidine           3.0         25           2
 I isoleucine          3.8         31           3
 K lysine              5.9         49           2
 L leucine            12.4        102           4
 M methionine          2.2         18           1
 N asparagine          4.2         35           3
 P proline             5.8         48           2
 Q glutamine           4.2         35           1
 R arginine            3.9         32           2
 S serine              7.0         58           2
 T threonine           5.1         42           2
 V valine              6.4         53           2
 W tryptophan          0.7          6           1
 Y tyrosine            3.4         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mucosa associated lymphoid tissue lymphoma translocat... 
MALT1                 0.981   mucosa associated lymphoid tissue lymphoma transloca...
CD22                  0.025   CD22 molecule 
PTPRF                 0.024   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.024   protein tyrosine phosphatase, receptor type, F isof...
PTPRS                 0.023   protein tyrosine phosphatase, receptor type, sigma ...
HSPG2                 0.023   heparan sulfate proteoglycan 2 
PTPRS                 0.021   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.021   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.021   protein tyrosine phosphatase, receptor type, D isofo...
DSCAML1               0.021   Down syndrome cell adhesion molecule like 1 
PTPRD                 0.020   protein tyrosine phosphatase, receptor type, D isof...
CNTN5                 0.020   contactin 5 isoform long 
CNTN5                 0.020   contactin 5 isoform short 
SIGLEC11              0.020   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC11              0.020   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
PTPRS                 0.020   protein tyrosine phosphatase, receptor type, sigma ...
PXDN                  0.020   peroxidasin 
HMCN1                 0.020   hemicentin 1 
PTPRD                 0.020   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.020   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.020   protein tyrosine phosphatase, receptor type, D isofo...
LRIG3                 0.019   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.019   leucine-rich repeats and immunoglobulin-like domain...
SIGLEC10              0.019   sialic acid binding Ig-like lectin 10 
TTN                   0.019   titin isoform N2-A 
ROBO2                 0.019   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.019   roundabout, axon guidance receptor, homolog 2 isofor...
ROBO1                 0.018   roundabout 1 isoform b 
ROBO1                 0.018   roundabout 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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