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Search of human proteins with 5803072
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5803072 LIM domain only 4 [Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5803072 LIM domain only 4 [Homo sapiens] 359 e-100
gi|4505005 LIM domain only 1 [Homo sapiens] 164 4e-41
gi|21361802 LIM domain only 3 [Homo sapiens] 159 1e-39
gi|47778935 LIM domain only 3 [Homo sapiens] 159 1e-39
gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens] 132 1e-31
gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens] 132 1e-31
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 132 1e-31
gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens] 122 1e-28
gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens] 122 1e-28
gi|15375314 LIM homeobox protein 4 [Homo sapiens] 121 2e-28
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 120 4e-28
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 114 3e-26
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 114 3e-26
gi|21956641 ISL LIM homeobox 2 [Homo sapiens] 112 1e-25
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 110 6e-25
gi|50083287 LIM homeobox 8 [Homo sapiens] 110 7e-25
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens] 107 4e-24
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens] 107 4e-24
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 107 6e-24
gi|115387114 islet-1 [Homo sapiens] 106 1e-23
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens] 105 2e-23
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 104 4e-23
gi|4505001 LIM domain kinase 1 [Homo sapiens] 78 4e-15
gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens] 71 5e-13
gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens] 71 5e-13
gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens] 71 5e-13
gi|194272207 actin binding LIM protein family, member 2 isoform ... 70 8e-13
gi|153792514 actin binding LIM protein family, member 2 isoform ... 70 8e-13
gi|194272204 actin binding LIM protein family, member 2 isoform ... 70 8e-13
gi|194272202 actin binding LIM protein family, member 2 isoform ... 70 8e-13
>gi|5803072 LIM domain only 4 [Homo sapiens]
Length = 165
Score = 359 bits (921), Expect = e-100
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>gi|4505005 LIM domain only 1 [Homo sapiens]
Length = 156
Score = 164 bits (414), Expect = 4e-41
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 21 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 80
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 81 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMD 141
Query: 141 RPTALINGHLNS 152
+NG S
Sbjct: 142 YEEGQLNGTFES 153
>gi|21361802 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 159 bits (402), Expect = 1e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Query: 21 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 80
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 81 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 141 RPTALI 146
L+
Sbjct: 131 YEEGLM 136
>gi|47778935 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 159 bits (402), Expect = 1e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Query: 21 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 80
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 81 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 141 RPTALI 146
L+
Sbjct: 131 YEEGLM 136
>gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 132 bits (333), Expect = 1e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 132 bits (333), Expect = 1e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 132 bits (333), Expect = 1e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 99 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 158
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 159 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 216
>gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens]
Length = 397
Score = 122 bits (307), Expect = 1e-28
Identities = 59/123 (47%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C+ K G I C+ DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRFS 129
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRP 142
C+ C I ASE+VMRA+ +VYHL CFTCSTC L GD F + ++C
Sbjct: 130 VQ-RCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Query: 143 TAL 145
T L
Sbjct: 189 TLL 191
>gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens]
Length = 388
Score = 122 bits (307), Expect = 1e-28
Identities = 59/123 (47%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C+ K G I C+ DY R F
Sbjct: 62 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRFS 120
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRP 142
C+ C I ASE+VMRA+ +VYHL CFTCSTC L GD F + ++C
Sbjct: 121 VQ-RCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
Query: 143 TAL 145
T L
Sbjct: 180 TLL 182
>gi|15375314 LIM homeobox protein 4 [Homo sapiens]
Length = 390
Score = 121 bits (304), Expect = 2e-28
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 22 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLF 81
+CAGC I D+F+L +D +WHS CLKC+ CQ QL D C++++G + C+ D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 82 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHD 140
G C+AC Q IP +++V +AQ VYHL CF C C +L GD F+ + +G L C+ D
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKED 143
Query: 141 RPTALIN 147
TA N
Sbjct: 144 YETAKQN 150
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 120 bits (302), Expect = 4e-28
Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C++K G I C+ DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNL-ESELTCFSKDGSIYCKEDYYRRFS 111
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
C+ C I ASE+VMRA+ VYHL CFTC+TC L GD F + ++C
Sbjct: 112 VQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYC 165
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 114 bits (286), Expect = 3e-26
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 6/123 (4%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
CAGC I DRF+L A+D +WHS+CLKCS C L + C+++ + C++D+ + FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 87
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGS-LFCEHDR 141
C+AC IP +++V RAQ VYHL CF C C+ +L GD F+ + S L C+ D
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 145
Query: 142 PTA 144
TA
Sbjct: 146 ETA 148
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 114 bits (286), Expect = 3e-26
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 6/123 (4%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
CAGC I DRF+L A+D +WHS+CLKCS C L + C+++ + C++D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGS-LFCEHDR 141
C+AC IP +++V RAQ VYHL CF C C+ +L GD F+ + S L C+ D
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 142 PTA 144
TA
Sbjct: 151 ETA 153
>gi|21956641 ISL LIM homeobox 2 [Homo sapiens]
Length = 359
Score = 112 bits (281), Expect = 1e-25
Identities = 61/157 (38%), Positives = 83/157 (52%), Gaps = 10/157 (6%)
Query: 5 GSSSQPPPVTAGSLSWKRCAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTS 63
G S+ P TA C GCG +I D+F+L + D WH+ CLKC+ C L + T
Sbjct: 15 GDHSKKKPGTA------MCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCT- 67
Query: 64 CYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLV 123
C+ + G C+ DY+RLFG C+ C +S+LVMRA+ +VYH++CF CS C +L+
Sbjct: 68 CFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLL 125
Query: 124 PGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLP 160
PGD F L C D L S +S LP
Sbjct: 126 PGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLP 162
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 110 bits (275), Expect = 6e-25
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
CAGC I DRFLL +D WH +C++C C+ L + C+++ G + C+ND+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFRRFG 61
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLF-CEHD- 140
C+ C Q I S+LV +A+ V+HL CFTC C +L G+ + I+ + F C+ D
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Query: 141 -RPTALINGHLNSLQS 155
++L G LNS+ S
Sbjct: 120 LSSSSLKEGSLNSVSS 135
>gi|50083287 LIM homeobox 8 [Homo sapiens]
Length = 356
Score = 110 bits (274), Expect = 7e-25
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
C CG +I D++LL D WH RCL CS C+ LG TSCY K I C+ DY R +G
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 133
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
CS CG+ I +++ V RA+GNVYHL CF C +C+ +L G+ F + + C
Sbjct: 134 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLC 186
Score = 33.9 bits (76), Expect = 0.066
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 87 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
C++CG I + +++ +H++C +CS CR L + + +FC+ D
Sbjct: 75 CNSCGLEI-VDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLD 127
>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
Length = 377
Score = 107 bits (268), Expect = 4e-24
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 11 PPVTAGSL---SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTK 67
PP A S+ C+ CG +I DR+LL + WH RCL+CS C+ L SCY K
Sbjct: 84 PPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-QNSCYIK 142
Query: 68 SGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDR 127
+ I C+ DY FG C+ CG+ I AS+ V RA+GN YHL CF C +C+ +L G+
Sbjct: 143 NKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEE 200
Query: 128 FHYINGSLFCEHDRPTALIN 147
F + + C T + N
Sbjct: 201 FGLVEEKVLCRIHYDTMIEN 220
>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
Length = 392
Score = 107 bits (268), Expect = 4e-24
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 11 PPVTAGSL---SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTK 67
PP A S+ C+ CG +I DR+LL + WH RCL+CS C+ L SCY K
Sbjct: 84 PPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-QNSCYIK 142
Query: 68 SGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDR 127
+ I C+ DY FG C+ CG+ I AS+ V RA+GN YHL CF C +C+ +L G+
Sbjct: 143 NKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEE 200
Query: 128 FHYINGSLFCEHDRPTALIN 147
F + + C T + N
Sbjct: 201 FGLVEEKVLCRIHYDTMIEN 220
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 107 bits (266), Expect = 6e-24
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
CAGC I DRFLL +D WH +C++C C+ L + C+++ G + C+ND+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLF-CEHDR 141
C+ C Q I S+LV RA+ V+HL CFTC C +L G+ + I+ + F C+ D
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Query: 142 PTALINGHLNSLQS 155
+ NSL S
Sbjct: 119 LSNSSVAKENSLHS 132
>gi|115387114 islet-1 [Homo sapiens]
Length = 349
Score = 106 bits (264), Expect = 1e-23
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLF 81
C GCG +I D+++L + D WH+ CLKC+ C L D +C+ + G C+ DYIRL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYL-DESCTCFVRDGKTYCKRDYIRLY 75
Query: 82 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
G C+ C ++ VMRA+ VYH++CF C C +L+PGD F LFC D
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRAD 132
>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
Length = 372
Score = 105 bits (261), Expect = 2e-23
Identities = 56/138 (40%), Positives = 71/138 (51%), Gaps = 11/138 (7%)
Query: 9 QPPPVTAGSLSWKRCA------GCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGT 62
+P P T G L C GC I+DRFL+ +S WH CL+C+ CQ L T
Sbjct: 13 RPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---T 69
Query: 63 SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRL 122
SCY + + C+ DY +LF + CS C + I +E VMRA VYHL CF C C +L
Sbjct: 70 SCYFRDRKLYCKQDYQQLF--AAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQL 127
Query: 123 VPGDRFHYINGSLFCEHD 140
GD F G L C+ D
Sbjct: 128 RKGDEFVLKEGQLLCKGD 145
Score = 43.1 bits (100), Expect = 1e-04
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 22 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDY 77
+C+GC KIA F++ A++ +H C C C+ QL G K G +LC+ DY
Sbjct: 91 KCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK-GDEFVLKEGQLLCKGDY 146
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 104 bits (259), Expect = 4e-23
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
C GC I DRFLL DS+WH +C++C+ C+ L T+C+ + + C+ DY +LF
Sbjct: 35 CEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFA 91
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
C C ++I +E VMRAQ +VYHL CF C C +L GD F G L C+ D
Sbjct: 92 VK--CGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147
Score = 42.7 bits (99), Expect = 1e-04
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 22 RCAGCGGKIA-DRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIR- 79
+C GC IA + F++ A S +H C C C+ QL G K G +LC+ DY +
Sbjct: 93 KCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQK-GDEFVLKEGQLLCKGDYEKE 151
Query: 80 ---LFGNSGACSACGQSIPASELVMRAQG 105
L S A S G+S L A G
Sbjct: 152 RELLSLVSPAASDSGKSDDEESLCKSAHG 180
>gi|4505001 LIM domain kinase 1 [Homo sapiens]
Length = 647
Score = 77.8 bits (190), Expect = 4e-15
Identities = 43/118 (36%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
CA CG +I D L A+++ WH+ C +C C A L Y K G + C+ DY +G
Sbjct: 25 CASCGQRIYDGQYLQALNADWHADCFRCCDCSASLSH---QYYEKDGQLFCKKDYWARYG 81
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGS-LFCEH 139
S C C + I LVM A YH +CF C TC + GD + + S L+C H
Sbjct: 82 ES--CHGCSEQI-TKGLVMVAGELKYHPECFICLTCGTFIGDGDTYTLVEHSKLYCGH 136
Score = 31.6 bits (70), Expect = 0.33
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDY 77
C GC +I ++ A + +H C C C +GD T + + C + Y
Sbjct: 84 CHGCSEQITKGLVMVAGELKYHPECFICLTCGTFIGDGDTYTLVEHSKLYCGHCY 138
>gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens]
Length = 746
Score = 70.9 bits (172), Expect = 5e-13
Identities = 48/129 (37%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCY- 65
SS P T S CAGCG I + L A+D WH C KC C G + T Y
Sbjct: 154 SSSPKETTFSS----NCAGCGRDIKNGQALLALDKQWHLGCFKCKSC----GKVLTGEYI 205
Query: 66 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPG 125
+K G C DY LFG C AC Q I V+ A YH C CS C G
Sbjct: 206 SKDGAPYCEKDYQGLFGVK--CEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEG 261
Query: 126 DRFHYINGS 134
+ Y+ GS
Sbjct: 262 EEM-YLQGS 269
Score = 65.1 bits (157), Expect = 3e-11
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
C CG +L ++H +C C C L G + K+G LC DY R++G
Sbjct: 39 CHKCGEPCKGE-VLRVQTKHFHIKCFTCKVCGCDLAQGGF--FIKNGEYLCTLDYQRMYG 95
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCE 138
C CG+ + V+ A G YH CF C+ C+ PGDR + C+
Sbjct: 96 TR--CHGCGEFVEGE--VVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQ 147
>gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens]
Length = 718
Score = 70.9 bits (172), Expect = 5e-13
Identities = 48/129 (37%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCY- 65
SS P T S CAGCG I + L A+D WH C KC C G + T Y
Sbjct: 154 SSSPKETTFSS----NCAGCGRDIKNGQALLALDKQWHLGCFKCKSC----GKVLTGEYI 205
Query: 66 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPG 125
+K G C DY LFG C AC Q I V+ A YH C CS C G
Sbjct: 206 SKDGAPYCEKDYQGLFGVK--CEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEG 261
Query: 126 DRFHYINGS 134
+ Y+ GS
Sbjct: 262 EEM-YLQGS 269
Score = 65.1 bits (157), Expect = 3e-11
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
C CG +L ++H +C C C L G + K+G LC DY R++G
Sbjct: 39 CHKCGEPCKGE-VLRVQTKHFHIKCFTCKVCGCDLAQGGF--FIKNGEYLCTLDYQRMYG 95
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCE 138
C CG+ + V+ A G YH CF C+ C+ PGDR + C+
Sbjct: 96 TR--CHGCGEFVEGE--VVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQ 147
>gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens]
Length = 778
Score = 70.9 bits (172), Expect = 5e-13
Identities = 48/129 (37%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCY- 65
SS P T S CAGCG I + L A+D WH C KC C G + T Y
Sbjct: 214 SSSPKETTFSS----NCAGCGRDIKNGQALLALDKQWHLGCFKCKSC----GKVLTGEYI 265
Query: 66 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPG 125
+K G C DY LFG C AC Q I V+ A YH C CS C G
Sbjct: 266 SKDGAPYCEKDYQGLFGVK--CEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEG 321
Query: 126 DRFHYINGS 134
+ Y+ GS
Sbjct: 322 EEM-YLQGS 329
Score = 65.1 bits (157), Expect = 3e-11
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
C CG +L ++H +C C C L G + K+G LC DY R++G
Sbjct: 99 CHKCGEPCKGE-VLRVQTKHFHIKCFTCKVCGCDLAQGGF--FIKNGEYLCTLDYQRMYG 155
Query: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCE 138
C CG+ + V+ A G YH CF C+ C+ PGDR + C+
Sbjct: 156 TR--CHGCGEFVEGE--VVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQ 207
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 70.1 bits (170), Expect = 8e-13
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 10 PPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSG 69
P P+ + C CG + +L D Y+H +C C C L + G + + G
Sbjct: 11 PSPLEKSPSTAILCNTCGN-VCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGF--FVRQG 67
Query: 70 MILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH 129
+C DY RL+G C +C Q I V+ A G YH CF C+ CR PGDR
Sbjct: 68 EYICTLDYQRLYGTR--CFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPFPPGDRVT 123
Query: 130 YINGSLFCE 138
+ C+
Sbjct: 124 FNGKECMCQ 132
Score = 61.2 bits (147), Expect = 4e-10
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 12 PVTAGSLSW-----KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
PV+ GS + + C GCG +I + L A+D +WH C KC C L +
Sbjct: 137 PVSVGSSAHLSQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYIS 193
Query: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGD 126
K G+ C DY FG C +C + I V+ A YH C C C G+
Sbjct: 194 KDGLPYCEADYHAKFGI--RCDSCEKYITGR--VLEAGEKHYHPSCALCVRCGQMFAEGE 249
Query: 127 RFHYINGS 134
Y+ GS
Sbjct: 250 EM-YLQGS 256
>gi|153792514 actin binding LIM protein family, member 2 isoform 6
[Homo sapiens]
Length = 521
Score = 70.1 bits (170), Expect = 8e-13
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 10 PPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSG 69
P P+ + C CG + +L D Y+H +C C C L + G + + G
Sbjct: 11 PSPLEKSPSTAILCNTCGN-VCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGF--FVRQG 67
Query: 70 MILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH 129
+C DY RL+G C +C Q I V+ A G YH CF C+ CR PGDR
Sbjct: 68 EYICTLDYQRLYGTR--CFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPFPPGDRVT 123
Query: 130 YINGSLFCE 138
+ C+
Sbjct: 124 FNGKECMCQ 132
Score = 61.2 bits (147), Expect = 4e-10
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 12 PVTAGSLSW-----KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
PV+ GS + + C GCG +I + L A+D +WH C KC C L +
Sbjct: 137 PVSVGSSAHLSQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYIS 193
Query: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGD 126
K G+ C DY FG C +C + I V+ A YH C C C G+
Sbjct: 194 KDGLPYCEADYHAKFGI--RCDSCEKYITGR--VLEAGEKHYHPSCALCVRCGQMFAEGE 249
Query: 127 RFHYINGS 134
Y+ GS
Sbjct: 250 EM-YLQGS 256
>gi|194272204 actin binding LIM protein family, member 2 isoform 5
[Homo sapiens]
Length = 531
Score = 70.1 bits (170), Expect = 8e-13
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 10 PPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSG 69
P P+ + C CG + +L D Y+H +C C C L + G + + G
Sbjct: 11 PSPLEKSPSTAILCNTCGN-VCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGF--FVRQG 67
Query: 70 MILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH 129
+C DY RL+G C +C Q I V+ A G YH CF C+ CR PGDR
Sbjct: 68 EYICTLDYQRLYGTR--CFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPFPPGDRVT 123
Query: 130 YINGSLFCE 138
+ C+
Sbjct: 124 FNGKECMCQ 132
Score = 61.2 bits (147), Expect = 4e-10
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 12 PVTAGSLSW-----KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
PV+ GS + + C GCG +I + L A+D +WH C KC C L +
Sbjct: 137 PVSVGSSAHLSQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYIS 193
Query: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGD 126
K G+ C DY FG C +C + I V+ A YH C C C G+
Sbjct: 194 KDGLPYCEADYHAKFGI--RCDSCEKYITGR--VLEAGEKHYHPSCALCVRCGQMFAEGE 249
Query: 127 RFHYINGS 134
Y+ GS
Sbjct: 250 EM-YLQGS 256
>gi|194272202 actin binding LIM protein family, member 2 isoform 4
[Homo sapiens]
Length = 559
Score = 70.1 bits (170), Expect = 8e-13
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 10 PPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSG 69
P P+ + C CG + +L D Y+H +C C C L + G + + G
Sbjct: 11 PSPLEKSPSTAILCNTCGN-VCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGF--FVRQG 67
Query: 70 MILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH 129
+C DY RL+G C +C Q I V+ A G YH CF C+ CR PGDR
Sbjct: 68 EYICTLDYQRLYGTR--CFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPFPPGDRVT 123
Query: 130 YINGSLFCE 138
+ C+
Sbjct: 124 FNGKECMCQ 132
Score = 61.2 bits (147), Expect = 4e-10
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 12 PVTAGSLSW-----KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
PV+ GS + + C GCG +I + L A+D +WH C KC C L +
Sbjct: 137 PVSVGSSAHLSQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYIS 193
Query: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGD 126
K G+ C DY FG C +C + I V+ A YH C C C G+
Sbjct: 194 KDGLPYCEADYHAKFGI--RCDSCEKYITGR--VLEAGEKHYHPSCALCVRCGQMFAEGE 249
Query: 127 RFHYINGS 134
Y+ GS
Sbjct: 250 EM-YLQGS 256
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,801,563
Number of Sequences: 37866
Number of extensions: 350755
Number of successful extensions: 1997
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 309
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.