Search of human proteins with 5729862

Search of human proteins with 5729862

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5729862 stem-loop (histone) binding protein [Homo sapiens]
         (270 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5729862 stem-loop (histone) binding protein [Homo sapiens]         564   e-161
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        43   3e-04
gi|52426743 cisplatin resistance-associated overexpressed protei...    40   0.002
gi|19923485 cisplatin resistance-associated overexpressed protei...    40   0.002
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]           39   0.006
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           37   0.014
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]           37   0.014
gi|156104891 general transcription factor IIF, polypeptide 1, 74...    37   0.024
gi|31377585 spermatogenesis associated 2-like [Homo sapiens]           36   0.031
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho...    35   0.069
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap...    35   0.069
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C...    35   0.069
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi...    35   0.069
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi...    35   0.090
gi|37674210 slingshot 2 [Homo sapiens]                                 35   0.090
gi|112363080 microtubule associated serine/threonine kinase 2 [H...    34   0.12 
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi...    34   0.12 
gi|154816198 transcription elongation factor B polypeptide 3C-li...    34   0.12 
gi|156938279 transcription elongation factor B polypeptide 3C [H...    34   0.12 
gi|94536852 transmembrane cochlear-expressed protein 2 [Homo sap...    33   0.26 
gi|78482617 general transcription factor IIIC, polypeptide 2, be...    33   0.26 
gi|4504205 general transcription factor IIIC, polypeptide 2, bet...    33   0.26 
gi|33239445 eukaryotic translation initiation factor 3, subunit ...    33   0.26 
gi|83367072 eukaryotic translation initiation factor 3, subunit ...    33   0.26 
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ...    33   0.34 
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]    33   0.34 
gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]            32   0.45 
gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]            32   0.45 
gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]            32   0.45 
gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]            32   0.45 

>gi|5729862 stem-loop (histone) binding protein [Homo sapiens]
          Length = 270

 Score =  564 bits (1453), Expect = e-161
 Identities = 270/270 (100%), Positives = 270/270 (100%)

Query: 1   MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF 60
           MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF
Sbjct: 1   MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF 60

Query: 61  TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES 120
           TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES
Sbjct: 61  TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES 120

Query: 121 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR 180
           MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR
Sbjct: 121 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR 180

Query: 181 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT 240
           RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT
Sbjct: 181 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT 240

Query: 241 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS 270
           KVRHMDSQVEDEFDLEACLTEPLRDFSAMS
Sbjct: 241 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS 270


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 51/184 (27%), Positives = 71/184 (38%), Gaps = 17/184 (9%)

Query: 4    RPRSPPRHQSRCDGDASPPSPARWSLGRKRR----ADGRRWRPEDAEEAEHRGAERRPES 59
            +PR+ PR QS  D    P +PA  +L R+ R    + GR   PE +   E    E  P+S
Sbjct: 1607 KPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTE-SSPEHPPKS 1665

Query: 60   FTTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKE 119
             T   G    SR S           R R ++      RK  ++     R+S S SS S E
Sbjct: 1666 RTARRG----SRSSPEPKTKSRTPPRRRSSRSSPELTRKARLS-----RRSRSASS-SPE 1715

Query: 120  SMSTVPADFETDESVLMRR--QKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKK 177
            + S  P       SV      +K  +  +   A     K   R  R P   P+   + + 
Sbjct: 1716 TRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRS 1775

Query: 178  YSRR 181
             SRR
Sbjct: 1776 RSRR 1779



 Score = 36.2 bits (82), Expect = 0.031
 Identities = 39/140 (27%), Positives = 50/140 (35%), Gaps = 20/140 (14%)

Query: 4    RPRSPPRHQSRCDGDASP-----------PSPARWSLGRKRRADGRRWRPEDAEEAEHRG 52
            R R+PP  + R     SP           P   R S  R      RR R   +     R 
Sbjct: 1959 RSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRS 2018

Query: 53   AERRPESFT------TPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGR 106
              R P +        TP  P+ RSR     +       RT      AR KR L  +    
Sbjct: 2019 RSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT---PRTARGKRSLTRSPPAI 2075

Query: 107  ERKSSSGSSDSKESMSTVPA 126
             R+S+SGSS  +   +T PA
Sbjct: 2076 RRRSASGSSSDRSRSATPPA 2095



 Score = 28.1 bits (61), Expect = 8.4
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 9/125 (7%)

Query: 5    PRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPED-AEEAEHRGAERRPESFT-- 61
            PR+P R +S CD    P +  +    R R         +    + E  G+E   +  T  
Sbjct: 1470 PRTPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVA 1529

Query: 62   -TPEGPKPRSRCS---DWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDS 117
             TP G + RS  S   D   +    E     +   ++ K +  +    R R  SS   DS
Sbjct: 1530 RTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQ--RSRSGSSPEVDS 1587

Query: 118  KESMS 122
            K  +S
Sbjct: 1588 KSRLS 1592


>gi|52426743 cisplatin resistance-associated overexpressed protein
           [Homo sapiens]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 4   RPRSPPRHQSRC-DGDASPPSPARWSLGRKRRA----DGRRWRPEDAEEAEH--RGAERR 56
           R RS  RH SR  D   S     + S  R+RR     D RR R  D  E +H  R  +RR
Sbjct: 292 RSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRR 351

Query: 57  PESFTTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSD 116
                  +  K RS+  D      E + +++  ++     +K  +    RE++S   +++
Sbjct: 352 RSKSRDRKSYKHRSKSRD-----REQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTE 406

Query: 117 SKES 120
           SKES
Sbjct: 407 SKES 410


>gi|19923485 cisplatin resistance-associated overexpressed protein
           [Homo sapiens]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 4   RPRSPPRHQSRC-DGDASPPSPARWSLGRKRRA----DGRRWRPEDAEEAEH--RGAERR 56
           R RS  RH SR  D   S     + S  R+RR     D RR R  D  E +H  R  +RR
Sbjct: 292 RSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRR 351

Query: 57  PESFTTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSD 116
                  +  K RS+  D      E + +++  ++     +K  +    RE++S   +++
Sbjct: 352 RSKSRDRKSYKHRSKSRD-----REQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTE 406

Query: 117 SKES 120
           SKES
Sbjct: 407 SKES 410


>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
          Length = 330

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 4   RPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGR--RWRPEDAEEAEHRGAERRPESFT 61
           R +S   H       +SP S    S  R R +     R R    E +  RG++ R  S +
Sbjct: 203 RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRS 262

Query: 62  TPEGPKPRSRC-SDWASAVEEDEMRTRVNKEMA--RYKRKLLINDFGRERKSSSGSSDSK 118
                 PR R  S  +S+ E +  R+R     +  R KR+       R  +SSSGSS S 
Sbjct: 263 HRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSG 322

Query: 119 ESMST 123
              S+
Sbjct: 323 SRSSS 327


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 31   RKRRADGR-RWRPEDAEEAEHRGAER-RPESFTTPEGPKPRSRCSDWASAVEEDEMRTRV 88
            RKR ++ R R R   ++   HR   R R  S       + RS+     S  +E   R+  
Sbjct: 1837 RKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPK 1896

Query: 89   NKEMARY-KRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKN 147
            ++  +R  KRK   +   R+   +   + S+ S S  P+      SV  RR   I+  + 
Sbjct: 1897 HRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRR 1956

Query: 148  TIAYDRYIKEVPRHLRQPGIHPKTPNKFKKY-SRRS 182
            +    R  +   R  R P    +TP++  +  SRRS
Sbjct: 1957 SRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRS 1992


>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
          Length = 2303

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 31   RKRRADGR-RWRPEDAEEAEHRGAER-RPESFTTPEGPKPRSRCSDWASAVEEDEMRTRV 88
            RKR ++ R R R   ++   HR   R R  S       + RS+     S  +E   R+  
Sbjct: 1837 RKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPK 1896

Query: 89   NKEMARY-KRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKN 147
            ++  +R  KRK   +   R+   +   + S+ S S  P+      SV  RR   I+  + 
Sbjct: 1897 HRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRR 1956

Query: 148  TIAYDRYIKEVPRHLRQPGIHPKTPNKFKKY-SRRS 182
            +    R  +   R  R P    +TP++  +  SRRS
Sbjct: 1957 SRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRS 1992


>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
           [Homo sapiens]
          Length = 517

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 12/140 (8%)

Query: 16  DGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPES---------FTTPEGP 66
           DG +S            ++ +G +   E ++ +E    E+ PE            TP+  
Sbjct: 276 DGSSSSQEEPESKAKAPQQEEGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEK 335

Query: 67  KPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPA 126
           K R   S+ + + EE ++ +  +  +   K+K       RERK S GSS       T  A
Sbjct: 336 KRRKDSSEESDSSEESDIDSEASSALFMAKKKTPPK---RERKPSGGSSRGNSRPGTPSA 392

Query: 127 DFETDESVLMRRQKQINYGK 146
           +  +  S L     ++  GK
Sbjct: 393 EGGSTSSTLRAAASKLEQGK 412


>gi|31377585 spermatogenesis associated 2-like [Homo sapiens]
          Length = 424

 Score = 36.2 bits (82), Expect = 0.031
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 164 QPGIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSE 223
           +P   P +P     Y    W+Q  KLW      W+PPAEE   L +       + E   E
Sbjct: 245 EPSPGPDSPPAELAYRPPLWEQSAKLWGTGGRAWEPPAEE---LPQASSPPYGALEEGLE 301

Query: 224 PQTSS 228
           P+ S+
Sbjct: 302 PEPSA 306


>gi|45120119 microtubule associated serine/threonine kinase 1
          [Homo sapiens]
          Length = 1570

 Score = 35.0 bits (79), Expect = 0.069
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 4  RPRSP-PRHQSRCDGDA----SPPSPARWSLGRKRRADGRRW 40
          RP SP P H      D+    SP +PA +S    RRADGRRW
Sbjct: 48 RPHSPLPGHLGSSPLDSPRNFSPNTPAHFSFASSRRADGRRW 89


>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
           sapiens]
          Length = 693

 Score = 35.0 bits (79), Expect = 0.069
 Identities = 41/205 (20%), Positives = 83/205 (40%), Gaps = 11/205 (5%)

Query: 28  SLGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTR 87
           +L  +++ D  R +  +   +E +     P S   P       +  D A  + + E+   
Sbjct: 256 TLKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQLQDEAKHLRQ-EVEGL 314

Query: 88  VNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKN 147
             K  ++ +    ++   +E+K      + +E +    A    ++  L  + +++   + 
Sbjct: 315 EGKLQSQVENNQALSLLSKEQKQRL--QEQEEMLREQEAQRVREQERLCEQNERLREQQK 372

Query: 148 TIAY--DRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGC 205
           T+    +R  K+  R  +Q     K   + +K  +R WDQ+ +LWK          EE  
Sbjct: 373 TLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERL--QKQEERL 430

Query: 206 DLQEIHPVDLESAESSSEPQTSSQD 230
            L + H +D + A    EPQ S +D
Sbjct: 431 ALSQNHKLDKQLA----EPQCSFED 451


>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
           isoform 1 [Homo sapiens]
          Length = 693

 Score = 35.0 bits (79), Expect = 0.069
 Identities = 41/205 (20%), Positives = 83/205 (40%), Gaps = 11/205 (5%)

Query: 28  SLGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTR 87
           +L  +++ D  R +  +   +E +     P S   P       +  D A  + + E+   
Sbjct: 256 TLKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQLQDEAKHLRQ-EVEGL 314

Query: 88  VNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKN 147
             K  ++ +    ++   +E+K      + +E +    A    ++  L  + +++   + 
Sbjct: 315 EGKLQSQVENNQALSLLSKEQKQRL--QEQEEMLREQEAQRVREQERLCEQNERLREQQK 372

Query: 148 TIAY--DRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGC 205
           T+    +R  K+  R  +Q     K   + +K  +R WDQ+ +LWK          EE  
Sbjct: 373 TLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERL--QKQEERL 430

Query: 206 DLQEIHPVDLESAESSSEPQTSSQD 230
            L + H +D + A    EPQ S +D
Sbjct: 431 ALSQNHKLDKQLA----EPQCSFED 451


>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
           sapiens]
          Length = 693

 Score = 35.0 bits (79), Expect = 0.069
 Identities = 41/205 (20%), Positives = 83/205 (40%), Gaps = 11/205 (5%)

Query: 28  SLGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTR 87
           +L  +++ D  R +  +   +E +     P S   P       +  D A  + + E+   
Sbjct: 256 TLKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQLQDEAKHLRQ-EVEGL 314

Query: 88  VNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKN 147
             K  ++ +    ++   +E+K      + +E +    A    ++  L  + +++   + 
Sbjct: 315 EGKLQSQVENNQALSLLSKEQKQRL--QEQEEMLREQEAQRVREQERLCEQNERLREQQK 372

Query: 148 TIAY--DRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGC 205
           T+    +R  K+  R  +Q     K   + +K  +R WDQ+ +LWK          EE  
Sbjct: 373 TLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERL--QKQEERL 430

Query: 206 DLQEIHPVDLESAESSSEPQTSSQD 230
            L + H +D + A    EPQ S +D
Sbjct: 431 ALSQNHKLDKQLA----EPQCSFED 451


>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
           sapiens]
          Length = 1031

 Score = 34.7 bits (78), Expect = 0.090
 Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 23/143 (16%)

Query: 2   ACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGA---ERRPE 58
           A R RS  R +SR   D            R +R D RR R  D +    R     +RR  
Sbjct: 13  ASRGRSGSRSRSRSPSDK-----------RSKRGDDRRSRSRDRDRRRERSRSRDKRRSR 61

Query: 59  SFTTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSK 118
           S       + RSR        E D  R R  +  +R +R+      GR  +SSS  + SK
Sbjct: 62  SRDRKRLRRSRSR--------ERDRSRER-RRSRSRDRRRSRSRSRGRRSRSSSPGNKSK 112

Query: 119 ESMSTVPADFETDESVLMRRQKQ 141
           ++ +   +  +TD     + +K+
Sbjct: 113 KTENRSRSKEKTDGGESSKEKKK 135


>gi|37674210 slingshot 2 [Homo sapiens]
          Length = 1423

 Score = 34.7 bits (78), Expect = 0.090
 Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 8   PPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPK 67
           P   +    G    P  A+W  G  RRA    +     +E EH GA     S +T +  K
Sbjct: 843 PAEGEQELQGSGMHPG-AKWYPGSVRRAT-LEFEERLRQEQEHHGAAPTCTSLSTRKNSK 900

Query: 68  PRSRCSDWASAVEEDEM---RTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTV 124
             S  +D A   + DE     + V KE    K K      G+   S +GS    E  +TV
Sbjct: 901 NDSSVADLAPKGKSDEAPPEHSFVLKEPEMSKGK------GKYSGSEAGSLSHSEQNATV 954

Query: 125 PA 126
           PA
Sbjct: 955 PA 956


>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
           sapiens]
          Length = 1798

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 224 PQTSSQDDFDVYSGTPTKVRHMDSQVEDEFDLEACLTEPLRDFSAMS 270
           PQ  S+DD   +     +  HMDS+ E+E   + CL   +R FS+ S
Sbjct: 802 PQLESEDDTSYFDTRSERYHHMDSEDEEEVSEDGCL--EIRQFSSCS 846



 Score = 29.3 bits (64), Expect = 3.8
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 4   RPRSPPR-HQSRCDGDA----SPPSPARWSLGRKRRADGRRW 40
           RP SP   H      D+    SP +PA +S    RR DGRRW
Sbjct: 188 RPHSPLHGHTGNSPLDSPRNFSPNAPAHFSFVPARRTDGRRW 229


>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
           sapiens]
          Length = 693

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 11/205 (5%)

Query: 28  SLGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTR 87
           +L  +++ D  R +  +   +E +    +P S   P       +  D A  + + E+   
Sbjct: 256 TLKEEKKRDIHRIQELERSLSELKNQMAKPPSLAPPAVTSVVEQLQDEAKHLRQ-EVEGL 314

Query: 88  VNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKN 147
             K  ++ +    ++   +E+K      + +E +         ++  L  + +++   + 
Sbjct: 315 EGKLQSQVENNQALSLLSKEQKQRL--QEQEEMLREQEVQRVREQERLCEQNERLREQQK 372

Query: 148 TIAY--DRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGC 205
           T+    +R  K+  R  +Q     K   + +K  +R WDQ+ +LWK          EE  
Sbjct: 373 TLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERL--QKQEERL 430

Query: 206 DLQEIHPVDLESAESSSEPQTSSQD 230
            L + H +D + A    EPQ S +D
Sbjct: 431 ALSQNHKLDKQLA----EPQCSFED 451


>gi|154816198 transcription elongation factor B polypeptide 3C-like
           [Homo sapiens]
          Length = 546

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 2   ACRPRSP---PRHQSRCDGDASPPSPAR---WSLGRKRRADGRRWRPEDAEEAEHRGAER 55
           A  PRSP   P H  R     +PP   R    S  R+ RA+ +R R   A+   HR    
Sbjct: 116 ATAPRSPSHSPEH--RRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT 173

Query: 56  RPESFTTPEGPKP 68
           R      PEGP+P
Sbjct: 174 RTAPLPMPEGPEP 186


>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
           sapiens]
          Length = 546

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 2   ACRPRSP---PRHQSRCDGDASPPSPAR---WSLGRKRRADGRRWRPEDAEEAEHRGAER 55
           A  PRSP   P H  R     +PP   R    S  R+ RA+ +R R   A+   HR    
Sbjct: 116 ATAPRSPSHSPEH--RRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT 173

Query: 56  RPESFTTPEGPKP 68
           R      PEGP+P
Sbjct: 174 RTAPLPMPEGPEP 186


>gi|94536852 transmembrane cochlear-expressed protein 2 [Homo
           sapiens]
          Length = 906

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 13/124 (10%)

Query: 12  QSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSR 71
           + R  G  SP SP R   GR+R               E  G + R E+  T EG + R  
Sbjct: 57  KERAGGSPSPGSPRRKQTGRRR-------------HREELGEQERGEAERTCEGRRKRDE 103

Query: 72  CSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETD 131
            + +       +    + +   + KR+           +S G S S+E ++ +    E  
Sbjct: 104 RASFQERTAAPKREKEIPRREEKSKRQKKPRSSSLASSASGGESLSEEELAQILEQVEEK 163

Query: 132 ESVL 135
           + ++
Sbjct: 164 KKLI 167


>gi|78482617 general transcription factor IIIC, polypeptide 2, beta
           110kDa [Homo sapiens]
          Length = 911

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 5   PRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWR-PEDAEEAEHRGAERRPESFTTP 63
           P S P      D      +P     GRK +A+    +  +D +  E +  +R PE F TP
Sbjct: 119 PPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFETP 178

Query: 64  EGPKPRSRCSDWA 76
            G +PR R +  A
Sbjct: 179 SGERPRRRAAQVA 191


>gi|4504205 general transcription factor IIIC, polypeptide 2, beta
           110kDa [Homo sapiens]
          Length = 911

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 5   PRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWR-PEDAEEAEHRGAERRPESFTTP 63
           P S P      D      +P     GRK +A+    +  +D +  E +  +R PE F TP
Sbjct: 119 PPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFETP 178

Query: 64  EGPKPRSRCSDWA 76
            G +PR R +  A
Sbjct: 179 SGERPRRRAAQVA 191


>gi|33239445 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 7   SPPRHQSRCDGDASPPSPARWSL----GRKRRADGRRWR-PEDAEEAEHRGAERRPESFT 61
           SPP  +      A PP PA+        R  R+D R     EDA   E R AE  P +  
Sbjct: 85  SPPAAEELPGSHAEPPVPAQGEAPGEQARDERSDSRAQAVSEDAGGNEGRAAEAEPRALE 144

Query: 62  TPEGPKPR-SRCSDWASAVEEDEMRTRVNKE 91
             +  +P  S   D+   V E+E+   V K+
Sbjct: 145 NGDADEPSFSDPEDFVDDVSEEELLGDVLKD 175


>gi|83367072 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 7   SPPRHQSRCDGDASPPSPARWSL----GRKRRADGRRWR-PEDAEEAEHRGAERRPESFT 61
           SPP  +      A PP PA+        R  R+D R     EDA   E R AE  P +  
Sbjct: 85  SPPAAEELPGSHAEPPVPAQGEAPGEQARDERSDSRAQAVSEDAGGNEGRAAEAEPRALE 144

Query: 62  TPEGPKPR-SRCSDWASAVEEDEMRTRVNKE 91
             +  +P  S   D+   V E+E+   V K+
Sbjct: 145 NGDADEPSFSDPEDFVDDVSEEELLGDVLKD 175


>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
           containing B [Homo sapiens]
          Length = 546

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 4   RPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTP 63
           R RS  RH+SR    +      R    R+R  +  R R  D +  + RG ER  E     
Sbjct: 329 RSRSRERHRSR--SRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKER---- 382

Query: 64  EGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMS 122
              + R R  +  S  E +E + + +K+  R++      D  +E+K S   S  ++  S
Sbjct: 383 --ERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDK--RDSKKEKKHSRSRSRERKHRS 437


>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
          Length = 1462

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 25/147 (17%)

Query: 4   RPRSPPRHQS--RCDGDASPPSPARWS-----LGRKRRADGRRWRPED------AEEAEH 50
           R  +PPR +S    D D S  +P  W      L   R   G +W   D      +   + 
Sbjct: 340 RYHTPPRSRSCSESDDDDSSETPPHWKEEMQRLRAYRPPSGEKWSKGDKLSDPCSSRWDE 399

Query: 51  RGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKS 110
           R   +R  S++           SD ++A      + R  ++  ++K+K      G+++K 
Sbjct: 400 RSLSQRSRSWSY------NGYYSDLSTARHSGHHKKRRKEKKVKHKKK------GKKQKH 447

Query: 111 SSGSSDSKESMSTVPADFETDESVLMR 137
                 +K+    +P+D E+ +S   R
Sbjct: 448 CRRHKQTKKRRILIPSDIESSKSSTRR 474


>gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 30  GRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTRVN 89
           G K    G R R    E  E R  ER+       EG K R R       V+E     +  
Sbjct: 203 GEKEEGIGERGREGGKEGREGRRKERKEGREGGREGGKKRGREEGRKGGVKE----RKEG 258

Query: 90  KEMARYKRKLLI-NDFGRERKSSS 112
           KE  R KRKL I ++FG+  K  S
Sbjct: 259 KEGRREKRKLAIPSNFGKTEKGFS 282


>gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 30  GRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTRVN 89
           G K    G R R    E  E R  ER+       EG K R R       V+E     +  
Sbjct: 203 GEKEEGIGERGREGGKEGREGRRKERKEGREGGREGGKKRGREEGRKGGVKE----RKEG 258

Query: 90  KEMARYKRKLLI-NDFGRERKSSS 112
           KE  R KRKL I ++FG+  K  S
Sbjct: 259 KEGRREKRKLAIPSNFGKTEKGFS 282


>gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 30  GRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTRVN 89
           G K    G R R    E  E R  ER+       EG K R R       V+E     +  
Sbjct: 203 GEKEEGIGERGREGGKEGREGRRKERKEGREGGREGGKKRGREEGRKGGVKE----RKEG 258

Query: 90  KEMARYKRKLLI-NDFGRERKSSS 112
           KE  R KRKL I ++FG+  K  S
Sbjct: 259 KEGRREKRKLAIPSNFGKTEKGFS 282


>gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 30  GRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTRVN 89
           G K    G R R    E  E R  ER+       EG K R R       V+E     +  
Sbjct: 203 GEKEEGIGERGREGGKEGREGRRKERKEGREGGREGGKKRGREEGRKGGVKE----RKEG 258

Query: 90  KEMARYKRKLLI-NDFGRERKSSS 112
           KE  R KRKL I ++FG+  K  S
Sbjct: 259 KEGRREKRKLAIPSNFGKTEKGFS 282


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.129    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,609,550
Number of Sequences: 37866
Number of extensions: 623685
Number of successful extensions: 2314
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 2212
Number of HSP's gapped (non-prelim): 218
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.