Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 57242777
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57242777 c-myc binding protein [Homo sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57242777 c-myc binding protein [Homo sapiens] 205 7e-54
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 33 0.037
gi|37622903 TSC22 domain family, member 3 isoform 1 [Homo sapiens] 33 0.048
gi|37622901 TSC22 domain family, member 3 isoform 2 [Homo sapiens] 33 0.048
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 33 0.048
gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens] 33 0.048
gi|13569901 TSC22 domain family, member 4 [Homo sapiens] 33 0.063
gi|55770834 centromere protein F [Homo sapiens] 32 0.11
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 32 0.11
gi|131412228 keratin 13 isoform b [Homo sapiens] 32 0.14
gi|131412225 keratin 13 isoform a [Homo sapiens] 32 0.14
gi|24430190 keratin 15 [Homo sapiens] 31 0.18
gi|62865625 TSC22 domain family, member 3 isoform 3 [Homo sapiens] 31 0.24
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 31 0.24
gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens] 31 0.24
gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens] 31 0.24
gi|41350337 toll-like receptor 1 [Homo sapiens] 30 0.31
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 30 0.31
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 30 0.41
gi|41281583 Histidine acid phosphatase domain containing 1 [Homo... 30 0.41
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 30 0.53
gi|122937227 U2-associated SR140 protein [Homo sapiens] 30 0.53
gi|207452735 epiplakin 1 [Homo sapiens] 29 0.70
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 29 0.91
gi|7705415 hook homolog 1 [Homo sapiens] 29 0.91
gi|21735548 centrosomal protein 2 [Homo sapiens] 28 1.2
gi|45237195 Janus kinase and microtubule interacting protein 2 [... 28 1.2
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 28 1.2
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 28 1.2
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 28 1.2
>gi|57242777 c-myc binding protein [Homo sapiens]
Length = 103
Score = 205 bits (521), Expect = 7e-54
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENP 60
MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENP
Sbjct: 1 MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENP 60
Query: 61 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEKRAE 103
EIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEKRAE
Sbjct: 61 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEKRAE 103
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 33.5 bits (75), Expect = 0.037
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 5 KAADSKREQFRRYL-EKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIE 63
K DS+ ++ R+ L + G T L L+ E + + L+ HL +A E E+E
Sbjct: 874 KRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEME 933
Query: 64 LLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEKRA 102
L KE+ A+ E N+ LK ++ + + QE ++A
Sbjct: 934 THLQSLQFDKEQMVAVTEANEALKKQIEELQ--QEARKA 970
>gi|37622903 TSC22 domain family, member 3 isoform 1 [Homo sapiens]
Length = 200
Score = 33.1 bits (74), Expect = 0.048
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 40 KPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEE 99
K A+D +K+HL A E E+E+L+ ++ E+ EK + EN LK + P Q E
Sbjct: 119 KIEQAMDLVKNHLMYAVRE--EVEILKEQIRELVEKNSQLERENTLLKTLAS---PEQLE 173
Query: 100 K 100
K
Sbjct: 174 K 174
>gi|37622901 TSC22 domain family, member 3 isoform 2 [Homo sapiens]
Length = 134
Score = 33.1 bits (74), Expect = 0.048
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 40 KPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEE 99
K A+D +K+HL A E E+E+L+ ++ E+ EK + EN LK + P Q E
Sbjct: 53 KIEQAMDLVKNHLMYAVRE--EVEILKEQIRELVEKNSQLERENTLLKTLAS---PEQLE 107
Query: 100 K 100
K
Sbjct: 108 K 108
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 40 KPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA-----KLAQYE 94
K A+D +K HL A E E+E+L+ ++ E+ EK + +EN LK +LAQ++
Sbjct: 983 KIEQAMDLVKSHLMYAVRE--EVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQ 1040
>gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens]
Length = 144
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 40 KPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA-----KLAQYE 94
K A+D +K HL A E E+E+L+ ++ E+ EK + +EN LK +LAQ++
Sbjct: 54 KIEQAMDLVKSHLMYAVRE--EVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQ 111
>gi|13569901 TSC22 domain family, member 4 [Homo sapiens]
Length = 395
Score = 32.7 bits (73), Expect = 0.063
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 40 KPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA 88
K A+D +K HL A E E+E+L+ ++ E+ E+ A+ +EN L+A
Sbjct: 321 KIEQAMDLVKSHLMFAVRE--EVEVLKEQIRELAERNAALEQENGLLRA 367
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 9 SKREQFRRYL-EKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRL 67
S++E + + EK G L L K+L + E+ A +K A +E+L+
Sbjct: 2210 SEKENLTKQIQEKQGQLSELDKLLSSFKSLLEEKEQAEIQIKEESKTA------VEMLQN 2263
Query: 68 ELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEK 100
+L E+ E A+ + + +KA +PP EE+
Sbjct: 2264 QLKELNEAVAALCGDQEIMKATEQSLDPPIEEE 2296
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 56 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 90
TP P + ++KEKY VEE K+L+A++
Sbjct: 151 TPLTPSQYYSGSKYEDLKEKYNKEVEERKRLEAEV 185
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 32.0 bits (71), Expect = 0.11
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 9 SKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPE-IELLRL 67
SK+E+ YL SG L L + E + + L L E+ E I+ L++
Sbjct: 1402 SKKEEDVSYL--SGQLSEKEAALTKIQTEIIEQEDLIKALHTQLEMQAKEHDERIKQLQV 1459
Query: 68 ELAEMKEKYEAIVEEN-------KKLKAKLAQYEPPQEEKRA 102
EL EMK+K E I EE+ +KL+A L + +E ++
Sbjct: 1460 ELCEMKQKPEEIGEESRAKQQIQRKLQAALISRKEALKENKS 1501
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 36 EEPEKPNSALDFLKHHLG-----AATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 90
E +K L L H G T E EL R +L EM++K + +ENK L A++
Sbjct: 2675 EIEDKLKKELKHLHHDAGIMRNETETAEERVAELAR-DLVEMEQKLLMVTKENKGLTAQI 2733
Query: 91 AQY 93
+
Sbjct: 2734 QSF 2736
>gi|131412228 keratin 13 isoform b [Homo sapiens]
Length = 420
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 23 VLDTLTKVLVALYEEPEKPNSALDFLKHH------------LGAATPE---NPEIELLRL 67
VLD LT L + E N L ++K + +G E P I+L R+
Sbjct: 214 VLDELTLSKTDLEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRV 273
Query: 68 ELAEMKEKYEAIVEENKK 85
LAEM+E+YEA+ E N++
Sbjct: 274 -LAEMREQYEAMAERNRR 290
>gi|131412225 keratin 13 isoform a [Homo sapiens]
Length = 458
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 23 VLDTLTKVLVALYEEPEKPNSALDFLKHH------------LGAATPE---NPEIELLRL 67
VLD LT L + E N L ++K + +G E P I+L R+
Sbjct: 214 VLDELTLSKTDLEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRV 273
Query: 68 ELAEMKEKYEAIVEENKK 85
LAEM+E+YEA+ E N++
Sbjct: 274 -LAEMREQYEAMAERNRR 290
>gi|24430190 keratin 15 [Homo sapiens]
Length = 456
Score = 31.2 bits (69), Expect = 0.18
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 16/78 (20%)
Query: 23 VLDTLTKVLVALYEEPEKPNSALDFLKHH---------------LGAATPENPEIELLRL 67
VLD LT L + E N L +LK + + P ++L R+
Sbjct: 215 VLDELTLARTDLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRV 274
Query: 68 ELAEMKEKYEAIVEENKK 85
LAEM+E+YEA+ E+N++
Sbjct: 275 -LAEMREQYEAMAEKNRR 291
>gi|62865625 TSC22 domain family, member 3 isoform 3 [Homo sapiens]
Length = 77
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 45 LDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEK 100
+D +K+HL A E E+E+L+ ++ E+ EK + EN LK + P Q EK
Sbjct: 1 MDLVKNHLMYAVRE--EVEILKEQIRELVEKNSQLERENTLLKTLAS---PEQLEK 51
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 48 LKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLK-------AKLAQYEPPQEEK 100
L H E E + LRLEL ++ + +A+ E+NK+L+ A +Q+ +EE
Sbjct: 61 LSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEEL 120
Query: 101 RAE 103
AE
Sbjct: 121 EAE 123
>gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens]
Length = 674
Score = 30.8 bits (68), Expect = 0.24
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 11 REQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELA 70
REQ R L+ +G L +V +KP S + F G P NP L EL
Sbjct: 509 REQNRYDLKTAGPQSQLLAGIVV-----DKPPSTMQFEDDDHGPPAPPNPFSHLTEGELE 563
Query: 71 EMK---EKYEAIVEENKKLKAK 89
E K E+ + +EEN +L +K
Sbjct: 564 EYKRTIERKQQGLEENHELFSK 585
>gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens]
Length = 674
Score = 30.8 bits (68), Expect = 0.24
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 11 REQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELA 70
REQ R L+ +G L +V +KP S + F G P NP L EL
Sbjct: 509 REQNRYDLKTAGPQSQLLAGIVV-----DKPPSTMQFEDDDHGPPAPPNPFSHLTEGELE 563
Query: 71 EMK---EKYEAIVEENKKLKAK 89
E K E+ + +EEN +L +K
Sbjct: 564 EYKRTIERKQQGLEENHELFSK 585
>gi|41350337 toll-like receptor 1 [Homo sapiens]
Length = 786
Score = 30.4 bits (67), Expect = 0.31
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 20/84 (23%)
Query: 17 YLEKSGVLD----TLTKVLVAL---YEEPEKPNSALDFLKHHLGAATPENPEIELL---- 65
+LEKS VL ++KVL+ L Y E E P DF L P N E +
Sbjct: 150 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 209
Query: 66 -----RLELAEMKEKYEAIVEENK 84
LEL+ +K ++E+NK
Sbjct: 210 VKTVANLELSNIK----CVLEDNK 229
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 40 KPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA 88
K A+D +K HL A E E+E+L+ ++ E+ E+ + EN LK+
Sbjct: 689 KIEQAMDLVKSHLMYAVRE--EVEVLKEQIKELVERNSLLERENALLKS 735
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 36 EEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEP 95
EE E+P ++ G E+PE+E ++ + EM+E+ E + E +++ ++ P
Sbjct: 97 EEEEEPG----LVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPP 152
Query: 96 P 96
P
Sbjct: 153 P 153
>gi|41281583 Histidine acid phosphatase domain containing 1 [Homo
sapiens]
Length = 1222
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 8 DSKREQFRR---YLEKSGVLDTLTKVLVALYEEPEKPNSA 44
+SK EQ++R YL L+ +T++++ LYE+P K S+
Sbjct: 844 ESKDEQWKRAMDYLNVVNELNYMTQIVIMLYEDPNKDLSS 883
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 29.6 bits (65), Expect = 0.53
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 10 KREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLEL 69
K Q ++K TL + +A YE +K T +N +IE L E+
Sbjct: 1140 KTMQELELVKKDAQQTTLMNMEIADYER---------LMKELNQKLTNKNNKIEDLEQEI 1190
Query: 70 AEMKEKYEAIVEENKKLKAKLAQYE 94
K+K E + EE L++ + QYE
Sbjct: 1191 KIQKQKQETLQEEITSLQSSVQQYE 1215
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 29.6 bits (65), Expect = 0.53
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 53 GAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEE 99
G + +EL + EL +++E+ + E K K +L+++EPPQ +
Sbjct: 195 GEKEKKKSNLELFKEELKQIQEERD----ERHKTKGRLSRFEPPQSD 237
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 4 YKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSAL 45
Y D KRE + Y +SG L+ L +++ EE E N +
Sbjct: 1804 YFTEDRKRELIQEYGAQSGGLEKLLEIITTTIEETETQNQGI 1845
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 3 HYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPE-NPE 61
H + + + E RR + L+ K + A + + + D +HH A T E
Sbjct: 648 HLQLVEDETELLRRNVAD---LEEQNKRITAELNKYKYKSGGHDSARHHDNAKTEALQEE 704
Query: 62 IELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 94
++ RL++ E+ K + EN+ L + + +Y+
Sbjct: 705 LKAARLQINELSGKVMQLQYENRVLMSNMQRYD 737
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 54 AATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEKR 101
AA P + E EM+E+ E + EEN+ LK ++ + +E R
Sbjct: 334 AAPPSSQPHPQQLQEQEEMQEEMEKLREENETLKNEIDELRTEMDEMR 381
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 32 VALYEEPEKPNSALDFLKHHLGAA-------TPENPEIELLRLELAEMKEKYEAIVEENK 84
V+L EE +K N+A L+ + + E+ + L E+ ++EK+EA+++E +
Sbjct: 355 VSLEEELKKANAARTQLETYKRQVQDLHVKLSSESKRADTLAFEMKRLEEKHEALLKEKE 414
Query: 85 KLKAKLAQYEPPQEEKR 101
+L + + EE R
Sbjct: 415 RLIEQRDTLKETNEELR 431
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 57 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 94
P + EI LLR +LAE + + E + E K AK YE
Sbjct: 626 PASAEIMLLRKQLAEKERRIEILESECK--VAKFRDYE 661
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 65 LRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEKRAE 103
L+++LAE +++ EA+ E+N L+A+L + E E +A+
Sbjct: 643 LQVDLAEAEKRREALWEKNTHLEAQLQKAEEAGAELQAD 681
>gi|45237195 Janus kinase and microtubule interacting protein 2
[Homo sapiens]
Length = 810
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 65 LRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEK 100
L + L M+EK +A+ +EN +++ K+ + P ++ K
Sbjct: 340 LMVSLQRMEEKLKAVTKENSEMREKITSHPPLKKLK 375
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 28.5 bits (62), Expect = 1.2
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 25 DTLTKVLVALYEEPEKPNSALDF---LKHHLG--AATPENPEIELLRLELAEMKEKYEAI 79
D L V +YE K LK HL AA+ + E L+ +L ++K KYE
Sbjct: 484 DALKDVQKRMYESEGKVKQMQTHFLALKEHLTSEAASGNHRLTEELKDQLKDLKVKYEGA 543
Query: 80 VEENKKLKAKLAQYEPPQEE-KRAE 103
E KL+ ++ Q E EE KR E
Sbjct: 544 SAEVGKLRNQIKQNEMIVEEFKRDE 568
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 5 KAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIEL 64
K + K E + LE + +++ L ++ PEK + LK ++ + E
Sbjct: 761 KYTEKKLEMEKLLLENDSLSKDVSR-LETVFVPPEKHEKEIIALKSNIVELKKQLSE--- 816
Query: 65 LRLELAEMKEKYEAIVEENKKLKAKLA-QYEP 95
L+ + E +EK A+ EN LK ++ QY P
Sbjct: 817 LKKKCGEDQEKIHALTSENTNLKKMMSNQYVP 848
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 68 ELAEMKEKYEAIVEENKKLK-------AKLAQYEPPQEEKRAE 103
+L EM+ ++E + E ++LK AKLAQ+ P+E ++ +
Sbjct: 636 KLVEMEREHEKSLSEIRQLKRELENVKAKLAQHVKPEEHEQVK 678
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 61 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEK 100
+I+ + + E K ++EENK+L+ +L+ E +E+K
Sbjct: 553 QIKQNEMIVEEFKRDEGKLIEENKRLQKELSMCEMEREKK 592
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 28.5 bits (62), Expect = 1.2
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 25 DTLTKVLVALYEEPEKPNSALDF---LKHHLG--AATPENPEIELLRLELAEMKEKYEAI 79
D L V +YE K LK HL AA+ + E L+ +L ++K KYE
Sbjct: 497 DALKDVQKRMYESEGKVKQMQTHFLALKEHLTSEAASGNHRLTEELKDQLKDLKVKYEGA 556
Query: 80 VEENKKLKAKLAQYEPPQEE-KRAE 103
E KL+ ++ Q E EE KR E
Sbjct: 557 SAEVGKLRNQIKQNEMIVEEFKRDE 581
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 5 KAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIEL 64
K + K E + LE + +++ L ++ PEK + LK ++ + E
Sbjct: 774 KYTEKKLEMEKLLLENDSLSKDVSR-LETVFVPPEKHEKEIIALKSNIVELKKQLSE--- 829
Query: 65 LRLELAEMKEKYEAIVEENKKLKAKLA-QYEP 95
L+ + E +EK A+ EN LK ++ QY P
Sbjct: 830 LKKKCGEDQEKIHALTSENTNLKKMMSNQYVP 861
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 68 ELAEMKEKYEAIVEENKKLK-------AKLAQYEPPQEEKRAE 103
+L EM+ ++E + E ++LK AKLAQ+ P+E ++ +
Sbjct: 649 KLVEMEREHEKSLSEIRQLKRELENVKAKLAQHVKPEEHEQVK 691
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 61 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEK 100
+I+ + + E K ++EENK+L+ +L+ E +E+K
Sbjct: 566 QIKQNEMIVEEFKRDEGKLIEENKRLQKELSMCEMEREKK 605
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 31 LVALYEEPEKPNSALDF----LKHHLGAATPENPEIELLRLELAEMKEKY----EAIVEE 82
+ A +E EK +L+ L+ L AA + +L + ELAE A+ +E
Sbjct: 1671 IFATAKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDE 1730
Query: 83 NKKLKAKLAQYEPPQEEKR 101
++L+A++AQ E EE++
Sbjct: 1731 KRRLEARIAQLEEELEEEQ 1749
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.128 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,037,574
Number of Sequences: 37866
Number of extensions: 156634
Number of successful extensions: 1133
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 225
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.