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Search of human proteins with 56847620
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56847620 basic transcription factor 3-like 4 isoform 1 [Homo
sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56847620 basic transcription factor 3-like 4 isoform 1 [Homo ... 308 1e-84
gi|20070130 basic transcription factor 3 isoform B [Homo sapiens] 249 7e-67
gi|83641885 basic transcription factor 3 isoform A [Homo sapiens] 249 7e-67
gi|211057406 basic transcription factor 3-like 4 isoform 2 [Homo... 200 5e-52
gi|239752518 PREDICTED: similar to leucine rich repeat containin... 32 0.23
gi|55743114 leucine rich repeat containing 49 [Homo sapiens] 32 0.23
gi|59933284 RUN domain containing 2B [Homo sapiens] 32 0.29
gi|116292170 RUN domain containing 2A [Homo sapiens] 32 0.29
gi|38044112 restin isoform b [Homo sapiens] 31 0.38
gi|4506751 restin isoform a [Homo sapiens] 31 0.38
gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens] 30 0.66
gi|153791839 sodium channel associated protein 1 [Homo sapiens] 30 0.66
gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens] 30 0.86
gi|169160859 PREDICTED: similar to actin, gamma 1 [Homo sapiens] 29 1.5
gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens] 29 1.5
gi|115529449 upstream binding transcription factor, RNA polymera... 29 1.9
gi|115529451 upstream binding transcription factor, RNA polymera... 29 1.9
gi|7657671 upstream binding transcription factor, RNA polymerase... 29 1.9
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 28 2.5
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora... 28 2.5
gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithora... 28 2.5
gi|4759188 syntaxin 8 [Homo sapiens] 28 2.5
gi|216548193 RAD54-like protein [Homo sapiens] 28 2.5
gi|216548186 RAD54-like protein [Homo sapiens] 28 2.5
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 28 3.3
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 28 3.3
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens] 28 3.3
gi|4502395 beclin 1 [Homo sapiens] 28 4.3
gi|7657540 schwannomin interacting protein 1 [Homo sapiens] 28 4.3
gi|157057547 Fc receptor-like 6 [Homo sapiens] 28 4.3
>gi|56847620 basic transcription factor 3-like 4 isoform 1 [Homo
sapiens]
Length = 158
Score = 308 bits (789), Expect = 1e-84
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60
MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI
Sbjct: 1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60
Query: 61 KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120
KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF
Sbjct: 61 KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120
Query: 121 PRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158
PRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN
Sbjct: 121 PRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158
>gi|20070130 basic transcription factor 3 isoform B [Homo sapiens]
Length = 162
Score = 249 bits (636), Expect = 7e-67
Identities = 128/158 (81%), Positives = 140/158 (88%), Gaps = 1/158 (0%)
Query: 1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60
MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQ SLKKL VNNI+GIEEVNM
Sbjct: 6 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 65
Query: 61 KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120
+ GTVIHFNNPKVQASL+ANTF ITGHAE K +TEMLP IL+QLGADSLTSLR+LAE
Sbjct: 66 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 125
Query: 121 PRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158
P+Q +D KAP +++DD+VPDLVENFDEASKNEAN
Sbjct: 126 PKQSVDGKAPLATG-EDDDDEVPDLVENFDEASKNEAN 162
>gi|83641885 basic transcription factor 3 isoform A [Homo sapiens]
Length = 206
Score = 249 bits (636), Expect = 7e-67
Identities = 128/158 (81%), Positives = 140/158 (88%), Gaps = 1/158 (0%)
Query: 1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60
MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQ SLKKL VNNI+GIEEVNM
Sbjct: 50 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 109
Query: 61 KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120
+ GTVIHFNNPKVQASL+ANTF ITGHAE K +TEMLP IL+QLGADSLTSLR+LAE
Sbjct: 110 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 169
Query: 121 PRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158
P+Q +D KAP +++DD+VPDLVENFDEASKNEAN
Sbjct: 170 PKQSVDGKAPLATG-EDDDDEVPDLVENFDEASKNEAN 206
>gi|211057406 basic transcription factor 3-like 4 isoform 2 [Homo
sapiens]
Length = 100
Score = 200 bits (508), Expect = 5e-52
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 59 MIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAE 118
MIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAE
Sbjct: 1 MIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAE 60
Query: 119 QFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158
QFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN
Sbjct: 61 QFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 100
>gi|239752518 PREDICTED: similar to leucine rich repeat containing
50, partial [Homo sapiens]
Length = 489
Score = 32.0 bits (71), Expect = 0.23
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 94 ITEMLPGILSQLGADSLTSLRKLA-------EQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146
+ E L GIL+ + + L R ++ +QF R +L+SK KP I+EE++D LV
Sbjct: 363 MAERLFGILAHVASSELPQYRLISILGDARKKQF-RYLLESKGKKPGIINEENNDSKRLV 421
Query: 147 -ENFDEASKN 155
EN + A+ N
Sbjct: 422 GENTNRATLN 431
>gi|55743114 leucine rich repeat containing 49 [Homo sapiens]
Length = 686
Score = 32.0 bits (71), Expect = 0.23
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 94 ITEMLPGILSQLGADSLTSLRKLA-------EQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146
+ E L GIL+ + + L R ++ +QF R +L+SK KP I+EE++D LV
Sbjct: 539 MAERLFGILAHVASSELPQYRLISILGDARKKQF-RYLLESKGKKPGIINEENNDSKRLV 597
Query: 147 -ENFDEASKN 155
EN + A+ N
Sbjct: 598 GENTNRATLN 607
>gi|59933284 RUN domain containing 2B [Homo sapiens]
Length = 249
Score = 31.6 bits (70), Expect = 0.29
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 27 VVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAIT 86
VV R +AD K + KK V NI ++ ++ G + P S N+
Sbjct: 89 VVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFK-KTPGAGESSEDNS---- 143
Query: 87 GHAEAKPITEM-LPGILSQLGADSLTSLR----KLAEQFPRQVLDSKAPKPEDIDEEDDD 141
H+ ++ P + G+ S S + L +F Q LD K+ ED+DE +DD
Sbjct: 144 DHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDENEDD 203
Query: 142 V 142
V
Sbjct: 204 V 204
>gi|116292170 RUN domain containing 2A [Homo sapiens]
Length = 375
Score = 31.6 bits (70), Expect = 0.29
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 27 VVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAIT 86
VV R +AD K + KK V NI ++ ++ G V P S N+ +
Sbjct: 242 VVSRNVSADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFK-KTPGAGESSEDNSDRSS 300
Query: 87 GHAEAKPITEMLPGILSQLGADS--LTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDV 142
+ + + P ++S + SL L +F Q LD K+ ED+DE +DDV
Sbjct: 301 VNIMSAFESPFGPNSNGSQSSNSWKIDSL-SLNGEFGYQKLDVKSIDDEDVDENEDDV 357
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 31.2 bits (69), Expect = 0.38
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 38 KLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASL-SANTFAITGHAEAKPITE 96
KLQ+ L L NN+ +EE+N K+ TV + + + + + A + + E
Sbjct: 1072 KLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQE 1131
Query: 97 MLPGILSQLG--ADSLTSLRKLAEQ---FPRQVLDSKAPKPEDIDEEDDDVPDLVENFDE 151
+ +LG D +TS +KL E+ Q+L+ K + + I + D++ L ++
Sbjct: 1132 ENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISI 1191
Query: 152 AS 153
S
Sbjct: 1192 TS 1193
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 31.2 bits (69), Expect = 0.38
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 38 KLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASL-SANTFAITGHAEAKPITE 96
KLQ+ L L NN+ +EE+N K+ TV + + + + + A + + E
Sbjct: 1107 KLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQE 1166
Query: 97 MLPGILSQLG--ADSLTSLRKLAEQ---FPRQVLDSKAPKPEDIDEEDDDVPDLVENFDE 151
+ +LG D +TS +KL E+ Q+L+ K + + I + D++ L ++
Sbjct: 1167 ENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISI 1226
Query: 152 AS 153
S
Sbjct: 1227 TS 1228
>gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]
Length = 1208
Score = 30.4 bits (67), Expect = 0.66
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 46 LAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQL 105
+A+ +I G + + + + + P ++ +++ + AE +P
Sbjct: 588 IALQSITGSQRIEIEELQNEEEELSPPLMEYNINVKSHPEIQFAEINKDGTSIPS----- 642
Query: 106 GADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158
S SL+ L E +Q K ++ D ++D VP +VE ++ K +AN
Sbjct: 643 -ESSTESLKDLQEVKSKQRKKKKTKNKKNKDSKEDQVPYVVEKEEQLRKEQAN 694
>gi|153791839 sodium channel associated protein 1 [Homo sapiens]
Length = 688
Score = 30.4 bits (67), Expect = 0.66
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 18 KGTARRKKKVV---HRTATADDKKLQ---SSLKKLAVNNIAGIEEVNMIKDDGTVIHFNN 71
+G ++K+K V H A D++LQ SS+K+L + I+E N ++ + T +
Sbjct: 253 QGQMKKKEKDVVSAHGREEASDRRLQQLQSSIKQLEIRLCVTIQEANQLRTENTHLEKQT 312
Query: 72 PKVQA 76
++QA
Sbjct: 313 RELQA 317
>gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens]
Length = 1621
Score = 30.0 bits (66), Expect = 0.86
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 108 DSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVE 147
DSL LR+ A + P+ D + +D D++DDD DL E
Sbjct: 1352 DSL--LRRAAAERPKYTFDFSEEEDDDADDDDDDNNDLEE 1389
>gi|169160859 PREDICTED: similar to actin, gamma 1 [Homo sapiens]
Length = 152
Score = 29.3 bits (64), Expect = 1.5
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 27 VVHRTATADDKKLQSSLK 44
+V RTATADDKKL+ S K
Sbjct: 1 MVQRTATADDKKLEKSYK 18
>gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens]
Length = 4523
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 44 KKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQAS-LSANTFAITGHAEAKPI 94
+K+++ G++ ++M+ DD T+ +NN + + +S AI H E P+
Sbjct: 3450 QKVSIPLTEGLDLISMLTDDATIAAWNNEGLPSDRMSTENAAILTHCERWPL 3501
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 28.9 bits (63), Expect = 1.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 109 SLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158
S+T LR + R L SK+ ED +E++DD E+ DE +++ N
Sbjct: 618 SMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDD-----EDEDEEEEDDEN 662
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 28.9 bits (63), Expect = 1.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 109 SLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158
S+T LR + R L SK+ ED +E++DD E+ DE +++ N
Sbjct: 618 SMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDD-----EDEDEEEEDDEN 662
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 28.9 bits (63), Expect = 1.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 109 SLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158
S+T LR + R L SK+ ED +E++DD E+ DE +++ N
Sbjct: 655 SMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDD-----EDEDEEEEDDEN 699
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 28.5 bits (62), Expect = 2.5
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 107 ADSLTSLRKLAE--QFPRQVLDSKAPKPEDIDEEDDDVPDLV 146
A+ LRKL QF +++ +SK +D +EEDDDV ++
Sbjct: 1550 AEESDRLRKLMLEWQFQKRLQESKQKDEDDEEEEDDDVDTML 1591
>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 2 [Homo
sapiens]
Length = 1651
Score = 28.5 bits (62), Expect = 2.5
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 107 ADSLTSLRKLAE--QFPRQVLDSKAPKPEDIDEEDDDVPDLV 146
A+ LRKL QF +++ +SK +D +EEDDDV ++
Sbjct: 1551 AEESDRLRKLMLEWQFQKRLQESKQKDEDDEEEEDDDVDTML 1592
>gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 3 [Homo
sapiens]
Length = 1612
Score = 28.5 bits (62), Expect = 2.5
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 107 ADSLTSLRKLAE--QFPRQVLDSKAPKPEDIDEEDDDVPDLV 146
A+ LRKL QF +++ +SK +D +EEDDDV ++
Sbjct: 1535 AEESDRLRKLMLEWQFQKRLQESKQKDEDDEEEEDDDVDTML 1576
>gi|4759188 syntaxin 8 [Homo sapiens]
Length = 236
Score = 28.5 bits (62), Expect = 2.5
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 10/54 (18%)
Query: 106 GADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEED---DDVPDLVENFDEASKNE 156
G D+L+S+ +Q +++ ++DE++ DD+ +LVEN DE +NE
Sbjct: 154 GLDALSSIISRQKQMGQEI-------GNELDEQNEIIDDLANLVENTDEKLRNE 200
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 90 EAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPED 134
+AKP E+L G +S S+TSL+KL P + D K + ED
Sbjct: 430 QAKPAEELLEGKMSVSSLSSITSLKKLCNH-PALIYD-KCVEEED 472
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 90 EAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPED 134
+AKP E+L G +S S+TSL+KL P + D K + ED
Sbjct: 430 QAKPAEELLEGKMSVSSLSSITSLKKLCNH-PALIYD-KCVEEED 472
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 28.1 bits (61), Expect = 3.3
Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 20/119 (16%)
Query: 39 LQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKP-ITEM 97
L L N++G N IKD TV N K SL IT + + I E+
Sbjct: 83 LAEKCPNLTYLNLSG----NKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFEL 138
Query: 98 LPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNE 156
L I G D D++AP E+ D+ED D D E +EA E
Sbjct: 139 LQQITYLDGFDQE---------------DNEAPDSEEEDDEDGDEDDEEEEENEAGPPE 182
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 28.1 bits (61), Expect = 3.3
Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 20/119 (16%)
Query: 39 LQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKP-ITEM 97
L L N++G N IKD TV N K SL IT + + I E+
Sbjct: 35 LAEKCPNLTYLNLSG----NKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFEL 90
Query: 98 LPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNE 156
L I G D D++AP E+ D+ED D D E +EA E
Sbjct: 91 LQQITYLDGFDQE---------------DNEAPDSEEEDDEDGDEDDEEEEENEAGPPE 134
>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
Length = 4116
Score = 28.1 bits (61), Expect = 3.3
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 3 QEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKD 62
Q +L LQ Q+ + + TA+ K+ T AD KKL + N A I + +
Sbjct: 2697 QRELTALQPQLILTSEETAKMMVKIEAETREADGKKLLVQADEKEANVAAAIAQGIKNEC 2756
Query: 63 DGTVIHFNNPKVQASLSA 80
+G + P ++A+L+A
Sbjct: 2757 EGDLAE-AMPALEAALAA 2773
>gi|4502395 beclin 1 [Homo sapiens]
Length = 450
Score = 27.7 bits (60), Expect = 4.3
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 22 RRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQA 76
+R +++ + D ++LQ LK+LA+ I+E+ ++ + ++ N KVQA
Sbjct: 163 KRCLEILEQMNEDDSEQLQMELKELALEEERLIQELEDVEKNRKIVAENLEKVQA 217
>gi|7657540 schwannomin interacting protein 1 [Homo sapiens]
Length = 487
Score = 27.7 bits (60), Expect = 4.3
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 75 QASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFP---RQVLDSKAPK 131
+AS +N+ +T +E K + PG D +++L E FP ++V+D AP+
Sbjct: 42 RASSQSNSTKVTPCSECKSSSS--PGG----SLDLVSALEDYEEPFPVYQKKVIDEWAPE 95
Query: 132 PEDIDEEDDDVPD 144
+ +EE++D D
Sbjct: 96 EDGEEEEEEDERD 108
>gi|157057547 Fc receptor-like 6 [Homo sapiens]
Length = 434
Score = 27.7 bits (60), Expect = 4.3
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 63 DGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPR 122
DG +HF+ S+ A T G +P +Q S T++ ++ E FP
Sbjct: 55 DGKFLHFSKENQTLSMGAATVQSRGQYSCSGQVMYIPQTFTQ---TSETAMVQVQELFPP 111
Query: 123 QVLDSKAPKPE 133
VL S P PE
Sbjct: 112 PVL-SAIPSPE 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.127 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,255,931
Number of Sequences: 37866
Number of extensions: 203097
Number of successful extensions: 944
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 56
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.