Guide to the Human Genome
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Name: GIMAP6 Sequence: fasta or formatted (292aa) NCBI GI: 56119214
Description:

GTPase, IMAP family member 6

Referenced in:

Additional Guanine Nucleotide-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         17           1
 C cysteine            1.0          3           1
 D aspartate           4.1         12           1
 E glutamate          13.0         38           4
 F phenylalanine       2.1          6           1
 G glycine             7.9         23           2
 H histidine           1.4          4           1
 I isoleucine          3.4         10           1
 K lysine              4.5         13           1
 L leucine            11.0         32           2
 M methionine          1.4          4           1
 N asparagine          3.4         10           2
 P proline             4.1         12           2
 Q glutamine           8.2         24           2
 R arginine            7.2         21           2
 S serine              6.5         19           1
 T threonine           4.8         14           1
 V valine              6.8         20           2
 W tryptophan          1.4          4           1
 Y tyrosine            2.1          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GTPase, IMAP family member 6 
GIMAP1                0.318   GTPase, IMAP family member 1 
GIMAP2                0.317   GTPase, IMAP family member 2 
GIMAP5                0.295   GTPase, IMAP family member 5 
GIMAP7                0.272   GTPase, IMAP family member 7 
GIMAP4                0.270   GTPase, IMAP family member 4 
GIMAP8                0.239   GTPase, IMAP family member 8 
ERAL1                 0.027   Era-like 1 
GIGYF2                0.022   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.022   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.022   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.022   GRB10 interacting GYF protein 2 isoform b 
LOC100130644          0.018   PREDICTED: similar to hCG2036814 
LOC100130644          0.018   PREDICTED: similar to hCG2036814 
LOC100288276          0.018   PREDICTED: hypothetical protein XP_002342504 
FNDC3B                0.014   fibronectin type III domain containing 3B 
FNDC3B                0.014   fibronectin type III domain containing 3B 
TRIM27                0.014   ret finger protein 
CALCOCO2              0.014   calcium binding and coiled-coil domain 2 
SEPT9                 0.013   septin 9 isoform f 
SEPT9                 0.013   septin 9 isoform d 
SEPT9                 0.013   septin 9 isoform e 
SEPT9                 0.013   septin 9 isoform b 
SEPT9                 0.013   septin 9 isoform e 
SEPT9                 0.013   septin 9 isoform a 
SEPT9                 0.013   septin 9 isoform c 
LOC100133758          0.013   PREDICTED: hypothetical protein, partial 
UNC84B                0.013   unc-84 homolog B 
EDC4                  0.013   autoantigen RCD8 
LOC283685             0.011   PREDICTED: golgi autoantigen, golgin subfamily a-li...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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