Guide to the Human Genome
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Name: GIMAP8 Sequence: fasta or formatted (665aa) NCBI GI: 28416956
Description:

GTPase, IMAP family member 8

Referenced in:

Additional Guanine Nucleotide-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         36           2
 C cysteine            2.3         15           2
 D aspartate           5.1         34           2
 E glutamate           8.0         53           3
 F phenylalanine       5.0         33           2
 G glycine             6.9         46           2
 H histidine           1.7         11           1
 I isoleucine          5.0         33           3
 K lysine              8.3         55           3
 L leucine             9.9         66           4
 M methionine          1.4          9           1
 N asparagine          5.1         34           2
 P proline             2.3         15           1
 Q glutamine           6.2         41           2
 R arginine            6.0         40           2
 S serine              7.4         49           2
 T threonine           5.9         39           1
 V valine              6.3         42           4
 W tryptophan          0.6          4           1
 Y tyrosine            1.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GTPase, IMAP family member 8 
GIMAP1                0.110   GTPase, IMAP family member 1 
GIMAP2                0.108   GTPase, IMAP family member 2 
GIMAP5                0.107   GTPase, IMAP family member 5 
GIMAP6                0.103   GTPase, IMAP family member 6 
GIMAP7                0.095   GTPase, IMAP family member 7 
GIMAP4                0.094   GTPase, IMAP family member 4 
ERAL1                 0.010   Era-like 1 
LOC100130644          0.009   PREDICTED: similar to hCG2036814 
LOC100130644          0.009   PREDICTED: similar to hCG2036814 
LOC100288276          0.009   PREDICTED: hypothetical protein XP_002342504 
SEPT9                 0.008   septin 9 isoform f 
SEPT9                 0.008   septin 9 isoform d 
SEPT9                 0.008   septin 9 isoform e 
SEPT9                 0.008   septin 9 isoform b 
SEPT9                 0.008   septin 9 isoform e 
SEPT9                 0.008   septin 9 isoform a 
SEPT9                 0.008   septin 9 isoform c 
AMN1                  0.007   antagonist of mitotic exit network 1 homolog 
SEPT3                 0.005   septin 3 isoform A 
SEPT3                 0.005   septin 3 isoform B 
PIK3C2G               0.005   phosphoinositide-3-kinase, class 2 gamma polypeptid...
YME1L1                0.005   YME1-like 1 isoform 1 
YME1L1                0.005   YME1-like 1 isoform 3 
PARVB                 0.005   parvin, beta isoform a 
ODF2                  0.005   outer dense fiber of sperm tails 2 isoform 2 
ODF2                  0.005   outer dense fiber of sperm tails 2 isoform 1 
PARVB                 0.005   parvin, beta isoform b 
LOC100288498          0.004   PREDICTED: hypothetical protein 
LOC100288498          0.004   PREDICTED: hypothetical protein XP_002344237 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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