Guide to the Human Genome
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Name: SLFN13 Sequence: fasta or formatted (897aa) NCBI GI: 56119108
Description:

schlafen family member 13

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         53           2
 C cysteine            2.9         26           2
 D aspartate           4.1         37           2
 E glutamate           8.0         72           2
 F phenylalanine       4.5         40           2
 G glycine             5.0         45           3
 H histidine           2.5         22           1
 I isoleucine          6.7         60           2
 K lysine              6.1         55           2
 L leucine             9.9         89           2
 M methionine          2.2         20           2
 N asparagine          3.2         29           1
 P proline             5.1         46           2
 Q glutamine           5.0         45           2
 R arginine            5.5         49           2
 S serine              7.8         70           3
 T threonine           4.1         37           2
 V valine              6.7         60           2
 W tryptophan          0.9          8           1
 Y tyrosine            3.8         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   schlafen family member 13 
SLFN11                0.743   schlafen family member 11 
SLFN11                0.743   schlafen family member 11 
SLFN11                0.743   schlafen family member 11 
SLFN11                0.743   schlafen family member 11 
SLFN11                0.743   schlafen family member 11 
SLFN5                 0.464   schlafen family member 5 
SLFN14                0.377   schlafen family member 14 
SLFN12                0.197   schlafen family member 12 
SLFN12L               0.194   schlafen family member 12-like 
SLFNL1                0.007   schlafen-like 1 
RGNEF                 0.006   Rho-guanine nucleotide exchange factor 
DSN1                  0.004   DSN1, MIND kinetochore complex component, homolog i...
DSN1                  0.004   DSN1, MIND kinetochore complex component, homolog i...
DSN1                  0.004   DSN1, MIND kinetochore complex component, homolog i...
DSN1                  0.004   DSN1, MIND kinetochore complex component, homolog i...
ARHGEF15              0.004   Rho guanine exchange factor 15 
CNGB1                 0.004   cyclic nucleotide gated channel beta 1 isoform a [H...
AK5                   0.004   adenylate kinase 5 isoform 1 
AK5                   0.004   adenylate kinase 5 isoform 2 
ATAD3C                0.004   ATPase family, AAA domain containing 3C 
NLRP8                 0.003   NLR family, pyrin domain containing 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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