Guide to the Human Genome
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Name: FSD2 Sequence: fasta or formatted (749aa) NCBI GI: 55741632
Description:

fibronectin type III and SPRY domain containing 2

Referenced in:

Fibronectin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         44           2
 C cysteine            2.5         19           1
 D aspartate           5.7         43           2
 E glutamate          12.1         91           3
 F phenylalanine       3.9         29           2
 G glycine             5.2         39           2
 H histidine           3.7         28           2
 I isoleucine          4.1         31           2
 K lysine              4.8         36           3
 L leucine             7.2         54           2
 M methionine          2.3         17           2
 N asparagine          3.5         26           1
 P proline             5.2         39           2
 Q glutamine           3.6         27           1
 R arginine            5.1         38           2
 S serine              7.1         53           2
 T threonine           5.7         43           2
 V valine              7.3         55           2
 W tryptophan          1.1          8           1
 Y tyrosine            3.9         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin type III and SPRY domain containing 2 [H... 
CMYA5                 0.203   cardiomyopathy associated 5 
MID2                  0.100   midline 2 isoform 1 
MID1                  0.065   midline 1 
MID1                  0.065   midline 1 
MID1                  0.065   midline 1 
MID2                  0.065   midline 2 isoform 2 
TRIM54                0.046   ring finger protein 30 isoform 2 
TRIM36                0.038   tripartite motif-containing 36 isoform 1 
FSD1L                 0.036   fibronectin type III and SPRY domain containing 1-li...
FSD1L                 0.036   fibronectin type III and SPRY domain containing 1-l...
ERMAP                 0.036   erythroblast membrane-associated protein precursor [...
ERMAP                 0.036   erythroblast membrane-associated protein precursor [...
FSD1                  0.036   fibronectin type III and SPRY domain containing 1 [H...
TRIM39                0.034   tripartite motif-containing 39 isoform 2 
TRIM39                0.034   tripartite motif-containing 39 isoform 1 
TRIM54                0.034   ring finger protein 30 isoform 1 
TRIM67                0.034   tripartite motif-containing 67 
BTN3A3                0.033   butyrophilin, subfamily 3, member A3 isoform a 
BTN3A3                0.033   butyrophilin, subfamily 3, member A3 isoform b [Homo...
SPRYD4                0.032   SPRY domain containing 4 
TRIM55                0.032   tripartite motif-containing 55 isoform 3 
TRIM55                0.032   tripartite motif-containing 55 isoform 1 
TRIM55                0.032   tripartite motif-containing 55 isoform 2 
BTN1A1                0.032   butyrophilin, subfamily 1, member A1 
BTNL8                 0.031   butyrophilin-like 8 isoform 6 
BTNL8                 0.031   butyrophilin-like 8 isoform 5 
BTNL8                 0.031   butyrophilin-like 8 isoform 3 precursor 
BTNL8                 0.031   butyrophilin-like 8 isoform 2 precursor 
BTN3A1                0.031   butyrophilin, subfamily 3, member A1 isoform c [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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