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Search of human proteins with 5454038
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5454038 synaptonemal complex protein SC65 [Homo sapiens]
(437 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5454038 synaptonemal complex protein SC65 [Homo sapiens] 904 0.0
gi|5453601 cartilage associated protein precursor [Homo sapiens] 418 e-117
gi|186928835 leprecan 1 isoform 1 [Homo sapiens] 187 1e-47
gi|226371643 leprecan 1 isoform 2 [Homo sapiens] 187 1e-47
gi|239753578 PREDICTED: similar to cartilage associated protein ... 172 7e-43
gi|27764882 leprecan-like 1 isoform a [Homo sapiens] 162 4e-40
gi|28466983 leprecan-like 2 [Homo sapiens] 121 1e-27
gi|197313662 leprecan-like 1 isoform b [Homo sapiens] 82 7e-16
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 36 0.060
gi|7705433 eukaryotic translation initiation factor 3 subunit 6 ... 36 0.060
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 34 0.30
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 34 0.30
gi|217272863 prolyl 4-hydroxylase, alpha II subunit isoform 1 pr... 34 0.30
gi|217272861 prolyl 4-hydroxylase, alpha II subunit isoform 2 pr... 34 0.30
gi|63252893 prolyl 4-hydroxylase, alpha II subunit isoform 2 pre... 34 0.30
gi|63252891 prolyl 4-hydroxylase, alpha II subunit isoform 2 pre... 34 0.30
gi|4758868 prolyl 4-hydroxylase, alpha II subunit isoform 1 prec... 34 0.30
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 32 0.87
gi|21735415 centromere protein B [Homo sapiens] 32 1.5
gi|169218106 PREDICTED: hypothetical protein, partial [Homo sapi... 31 1.9
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 31 1.9
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 31 1.9
gi|214010183 amyloid beta (A4) precursor-like protein 2 isoform ... 31 1.9
gi|214010181 amyloid beta (A4) precursor-like protein 2 isoform ... 31 1.9
gi|4502147 amyloid beta (A4) precursor-like protein 2 isoform 1 ... 31 1.9
gi|55925466 zinc finger protein 599 [Homo sapiens] 31 1.9
gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens] 31 1.9
gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens] 31 1.9
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap... 31 2.5
gi|218505694 potassium channel tetramerisation domain containing... 31 2.5
>gi|5454038 synaptonemal complex protein SC65 [Homo sapiens]
Length = 437
Score = 904 bits (2336), Expect = 0.0
Identities = 437/437 (100%), Positives = 437/437 (100%)
Query: 1 MARVAWGLLWLLLGSAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLE 60
MARVAWGLLWLLLGSAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLE
Sbjct: 1 MARVAWGLLWLLLGSAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLE 60
Query: 61 AALRLHRLLRDSEAFCHANCSGPAPAAKPDPDGGRADEWACELRLFGRVLERAACLRRCK 120
AALRLHRLLRDSEAFCHANCSGPAPAAKPDPDGGRADEWACELRLFGRVLERAACLRRCK
Sbjct: 61 AALRLHRLLRDSEAFCHANCSGPAPAAKPDPDGGRADEWACELRLFGRVLERAACLRRCK 120
Query: 121 RTLPAFQVPYPPRQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAK 180
RTLPAFQVPYPPRQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAK
Sbjct: 121 RTLPAFQVPYPPRQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAK 180
Query: 181 YLNYYQGMLDVADESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFAR 240
YLNYYQGMLDVADESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFAR
Sbjct: 181 YLNYYQGMLDVADESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFAR 240
Query: 241 CLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVDKFVATMYHYLQ 300
CLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVDKFVATMYHYLQ
Sbjct: 241 CLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVDKFVATMYHYLQ 300
Query: 301 FAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEEEDFQPREEAMLYH 360
FAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEEEDFQPREEAMLYH
Sbjct: 301 FAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEEEDFQPREEAMLYH 360
Query: 361 NQTAELRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQE 420
NQTAELRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQE
Sbjct: 361 NQTAELRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQE 420
Query: 421 PDAKGDEAEAEPEPELA 437
PDAKGDEAEAEPEPELA
Sbjct: 421 PDAKGDEAEAEPEPELA 437
>gi|5453601 cartilage associated protein precursor [Homo sapiens]
Length = 401
Score = 418 bits (1074), Expect = e-117
Identities = 208/375 (55%), Positives = 267/375 (71%), Gaps = 6/375 (1%)
Query: 13 LGSAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDS 72
L + AQYE+YSFR FP ++LMPL +AY HAL++Y GE W ES YLE +LRLHRLLRDS
Sbjct: 21 LRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDS 80
Query: 73 EAFCHANCSGPAPAAKPDPDGGRADEWACELRLFGRVLERAACLRRCKRTLPAFQVPYPP 132
EAFCH NCS A +P+P G A ELRLFG +L RA CL+RCK+ LPAF+ P
Sbjct: 81 EAFCHRNCSA---APQPEPAAGLASY--PELRLFGGLLRRAHCLKRCKQGLPAFRQSQPS 135
Query: 133 RQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVA 192
R++L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P E+ + + YY+ L A
Sbjct: 136 REVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKS-LPGA 194
Query: 193 DESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQV 252
++ + DLE + YE++F+RAV+ YN ++R+S DME AL ++ F CLA CEG+ E
Sbjct: 195 EDYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIK 254
Query: 253 DFKDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDVRQA 312
DFKDFY +IAD + E L+CK+ CE NLTP +GGY V+KFVATMYHYLQFAYYKLND++ A
Sbjct: 255 DFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNA 314
Query: 313 ARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEEEDFQPREEAMLYHNQTAELRELLEF 372
A A SY+LFD D VMQQNLVYY++HR WGL +E FQPR EA+ + N T +EL +F
Sbjct: 315 APCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGLSDEHFQPRPEAVQFFNVTTLQKELYDF 374
Query: 373 THMYLQSDDEMELEE 387
+ DDE E+ E
Sbjct: 375 AKENIMDDDEGEVVE 389
>gi|186928835 leprecan 1 isoform 1 [Homo sapiens]
Length = 736
Score = 187 bits (476), Expect = 1e-47
Identities = 131/382 (34%), Positives = 182/382 (47%), Gaps = 28/382 (7%)
Query: 8 LLWLLLGSAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHR 67
LL ++ ++ A+ E + G DL+ + Y W +E ALR
Sbjct: 12 LLAVVAAASQAEVESEAGWGMVTPDLL-----FAEGTAAYARGDWPGVVLSMERALRSRA 66
Query: 68 LLRDSEAFCHANCSGPAPAAKPDPDGGRADEWAC------ELRLFGRVLERAACLRRCKR 121
LR C C+ P + DPD + A +L FG +L RAACLRRC
Sbjct: 67 ALRALRLRCRTQCAADFPW-ELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACLRRCLG 125
Query: 122 TLPAFQVPYPPRQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKY 181
A + ++ +F+ R PY YL A FK N+LEKAVAAA+TF NP+H +
Sbjct: 126 PPAAHSLS---EEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQN 182
Query: 182 LNYYQGMLDVADESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARC 241
L+YYQ M V + DLE QP+ F V+LY+ + + +E AL EY + C
Sbjct: 183 LDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEEC 242
Query: 242 LAGCEGAHEQVDFK------DFYPAIADLFAESLQCKVDCEANLT--PNVGGYFVDKFVA 293
A CEG ++ + D + AI D + + L CK +C L P+ F D F+
Sbjct: 243 RALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFED-FLP 301
Query: 294 TMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEE-EDFQP 352
+ Y+YLQFAYY + + QA A +Y+LF P D VM QNL YY A G E P
Sbjct: 302 SHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYY---AAMLGEEHTRSIGP 358
Query: 353 REEAMLYHNQTAELRELLEFTH 374
RE A Y ++ +ELL F +
Sbjct: 359 RESAKEYRQRSLLEKELLFFAY 380
>gi|226371643 leprecan 1 isoform 2 [Homo sapiens]
Length = 697
Score = 187 bits (476), Expect = 1e-47
Identities = 131/382 (34%), Positives = 182/382 (47%), Gaps = 28/382 (7%)
Query: 8 LLWLLLGSAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHR 67
LL ++ ++ A+ E + G DL+ + Y W +E ALR
Sbjct: 12 LLAVVAAASQAEVESEAGWGMVTPDLL-----FAEGTAAYARGDWPGVVLSMERALRSRA 66
Query: 68 LLRDSEAFCHANCSGPAPAAKPDPDGGRADEWAC------ELRLFGRVLERAACLRRCKR 121
LR C C+ P + DPD + A +L FG +L RAACLRRC
Sbjct: 67 ALRALRLRCRTQCAADFPW-ELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACLRRCLG 125
Query: 122 TLPAFQVPYPPRQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKY 181
A + ++ +F+ R PY YL A FK N+LEKAVAAA+TF NP+H +
Sbjct: 126 PPAAHSLS---EEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQN 182
Query: 182 LNYYQGMLDVADESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARC 241
L+YYQ M V + DLE QP+ F V+LY+ + + +E AL EY + C
Sbjct: 183 LDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEEC 242
Query: 242 LAGCEGAHEQVDFK------DFYPAIADLFAESLQCKVDCEANLT--PNVGGYFVDKFVA 293
A CEG ++ + D + AI D + + L CK +C L P+ F D F+
Sbjct: 243 RALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFED-FLP 301
Query: 294 TMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEE-EDFQP 352
+ Y+YLQFAYY + + QA A +Y+LF P D VM QNL YY A G E P
Sbjct: 302 SHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYY---AAMLGEEHTRSIGP 358
Query: 353 REEAMLYHNQTAELRELLEFTH 374
RE A Y ++ +ELL F +
Sbjct: 359 RESAKEYRQRSLLEKELLFFAY 380
>gi|239753578 PREDICTED: similar to cartilage associated protein
[Homo sapiens]
Length = 241
Score = 172 bits (435), Expect = 7e-43
Identities = 87/148 (58%), Positives = 106/148 (71%), Gaps = 5/148 (3%)
Query: 13 LGSAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDS 72
L + AQYE+YSFR FP ++LMPL +AY HAL++Y GE W ES YLE +LRLHRLLRDS
Sbjct: 21 LRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDS 80
Query: 73 EAFCHANCSGPAPAAKPDPDGGRADEWACELRLFGRVLERAACLRRCKRTLPAFQVPYPP 132
EAFCH NCS A +P+P G A ELRLFG +L RA CL+RCK+ LPAF+ P
Sbjct: 81 EAFCHRNCSA---APQPEPAAGLAS--YPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPS 135
Query: 133 RQLLRDFQSRLPYQYLHYALFKANRLEK 160
R++L DFQ R PY++L +A FKAN L K
Sbjct: 136 REVLADFQRREPYKFLQFAYFKANNLPK 163
>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
Length = 708
Score = 162 bits (411), Expect = 4e-40
Identities = 108/317 (34%), Positives = 148/317 (46%), Gaps = 15/317 (4%)
Query: 30 PEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCSGPAPAAKP 89
P L P Y Y + + R LEAALR HR LR+ C +C+ P P
Sbjct: 38 PGPLQPFDLLYASGAAAYYSGDYERAVRDLEAALRSHRRLREIRTRCARHCAARHPLPPP 97
Query: 90 DPDGGRADEWACELRLFGRVLERAACLRRCKRTL---PAFQVPYPPRQLLRDFQSRLPYQ 146
P G EL LF +L RA C R C+ PA + + DFQ R+PY
Sbjct: 98 PPGEGPG----AELPLFRSLLGRARCYRSCETQRLGGPASRHRVS-EDVRSDFQRRVPYN 152
Query: 147 YLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADESLTDLEAQPYEA 206
YL A K N+LEKAV AA+TF NP+H + + Y+ V L D EA+P+
Sbjct: 153 YLQRAYIKLNQLEKAVEAAHTFFVANPEHMEMQQNIENYRATAGVEALQLVDREAKPHME 212
Query: 207 VFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARCLAGCEG-----AHEQVDFK-DFYPA 260
+ VK Y + DF + E+AL EY C CEG +E + +K Y A
Sbjct: 213 SYNAGVKHYEADDFEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEYLGYKAGLYEA 272
Query: 261 IADLFAESLQCKVDCEANLTPNVGGYF-VDKFVATMYHYLQFAYYKLNDVRQAARSAASY 319
IAD + + L C+ +C L G ++ F+ Y YLQFAYY++ + +A A +Y
Sbjct: 273 IADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAY 332
Query: 320 MLFDPKDSVMQQNLVYY 336
+L P D + N+ YY
Sbjct: 333 LLCHPDDEDVLDNVDYY 349
Score = 54.7 bits (130), Expect = 2e-07
Identities = 63/234 (26%), Positives = 94/234 (40%), Gaps = 34/234 (14%)
Query: 202 QPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLA---VFARCLAGCEGAHEQVDFKDFY 258
QP++ ++ Y SGD+ + D+E AL + + RC C H
Sbjct: 42 QPFDLLYASGAAAYYSGDYERAVRDLEAALRSHRRLREIRTRCARHCAARHPLPPPPPGE 101
Query: 259 PAIADL--FAESL---QCKVDCEANLTPNVGG----YFVDKFVAT------MYHYLQFAY 303
A+L F L +C CE T +GG + V + V + Y+YLQ AY
Sbjct: 102 GPGAELPLFRSLLGRARCYRSCE---TQRLGGPASRHRVSEDVRSDFQRRVPYNYLQRAY 158
Query: 304 YKLNDVRQAARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEEEDFQPREEAMLYHNQT 363
KLN + +A +A ++ + +P+ MQQN+ Y RA G+E RE +
Sbjct: 159 IKLNQLEKAVEAAHTFFVANPEHMEMQQNIENY---RATAGVEALQLVDREAKPHMESYN 215
Query: 364 AELRELLEFTHMYLQSDDEMELEETEPPLEP---EDALSDAEFEGEGDYEEGMY 414
A ++ Y D EM + E L ED EG +EE Y
Sbjct: 216 AGVKH-------YEADDFEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEY 262
Score = 50.1 bits (118), Expect = 4e-06
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 35 PLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCSGPAPAAKPDPDGG 94
P +Y ++ YE + + + R+ E ALR + + D+E C C GP + + G
Sbjct: 209 PHMESYNAGVKHYEADDFEMAIRHFEQALREY-FVEDTE--CRTLCEGPQRFEEYEYLGY 265
Query: 95 RADEWACELRLFGRVLERAACLRRCKRTLPAFQVPYPPRQLLRDFQSRLP--YQYLHYAL 152
+A + + +VL C C R L P R L ++ LP Y YL +A
Sbjct: 266 KAGLYEAIADHYMQVL---VCQHECVRELAT----RPGR--LSPIENFLPLHYDYLQFAY 316
Query: 153 FKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADESLTDLEAQPYEAVFLRAV 212
++ KA+ A +L +P E ++YY+ +LD + + +EA+ +F++
Sbjct: 317 YRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDP-ASIEAREDLTMFVKRH 375
Query: 213 KL 214
KL
Sbjct: 376 KL 377
>gi|28466983 leprecan-like 2 [Homo sapiens]
Length = 736
Score = 121 bits (304), Expect = 1e-27
Identities = 109/374 (29%), Positives = 158/374 (42%), Gaps = 37/374 (9%)
Query: 27 GFPPE--DLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCSGPA 84
G PP+ DL+ Y L Y +W + L ALR L C A+C+
Sbjct: 31 GAPPQAPDLL-----YADGLRAYAAGAWAPAVALLREALRSQAALGRVRLDCGASCAADP 85
Query: 85 PAA-------KPDPDGGRAD-EWACELRLFGRVLERAACLRRC--KRTLPAFQVPYPPRQ 134
AA P+PD G + + E +L L RA CL +C +R P
Sbjct: 86 GAALPAVLLGAPEPDSGPGPTQGSWERQLLRAALRRADCLTQCAARRLGPGGAARLRVGS 145
Query: 135 LLRD-FQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVAD 193
LRD F+ R PY YL A ++ +L+ A AAA+TF NP H + + Y+ M V
Sbjct: 146 ALRDAFRRREPYNYLQRAYYQLKKLDLAAAAAHTFFVANPMHLQMREDMAKYRRMSGVRP 205
Query: 194 ESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQVD 253
+S DLE P+ A + ++L + + +E AL LA C A CEG EQ
Sbjct: 206 QSFRDLETPPHWAAYDTGLELLGRQEAGLALPRLEEALQGSLAQMESCRADCEGPEEQQG 265
Query: 254 FKD----------FYPAIADLFAESLQCKVDCEANLTPNVGGYF-VDKFVATMYHYLQFA 302
++ Y AIA + + LQC+ C G F V F+ L A
Sbjct: 266 AEEEEDGAASQGGLYEAIAGHWIQVLQCRQRCVGETATRPGRSFPVPDFLPNQLRRLHEA 325
Query: 303 YYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEEEDFQPREEAMLYHNQ 362
+ ++ ++ QA + S +LF P+D ++ L Y +A+ G PRE+ Q
Sbjct: 326 HAQVGNLSQAIENVLSVLLFYPEDEAAKRALNQY---QAQLGEPRPGLGPREDI-----Q 377
Query: 363 TAELRELLEFTHMY 376
LR L E +Y
Sbjct: 378 RFILRSLGEKRQLY 391
>gi|197313662 leprecan-like 1 isoform b [Homo sapiens]
Length = 527
Score = 82.4 bits (202), Expect = 7e-16
Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 185 YQGMLDVADESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARCLAG 244
Y+ V L D EA+P+ + VK Y + DF + E+AL EY C
Sbjct: 10 YRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYFVEDTECRTL 69
Query: 245 CEGA-----HEQVDFK-DFYPAIADLFAESLQCKVDCEANLTPNVGGYF-VDKFVATMYH 297
CEG +E + +K Y AIAD + + L C+ +C L G ++ F+ Y
Sbjct: 70 CEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYD 129
Query: 298 YLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYY 336
YLQFAYY++ + +A A +Y+L P D + N+ YY
Sbjct: 130 YLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYY 168
Score = 50.1 bits (118), Expect = 4e-06
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 35 PLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCSGPAPAAKPDPDGG 94
P +Y ++ YE + + + R+ E ALR + + D+E C C GP + + G
Sbjct: 28 PHMESYNAGVKHYEADDFEMAIRHFEQALREY-FVEDTE--CRTLCEGPQRFEEYEYLGY 84
Query: 95 RADEWACELRLFGRVLERAACLRRCKRTLPAFQVPYPPRQLLRDFQSRLP--YQYLHYAL 152
+A + + +VL C C R L P R L ++ LP Y YL +A
Sbjct: 85 KAGLYEAIADHYMQVL---VCQHECVRELAT----RPGR--LSPIENFLPLHYDYLQFAY 135
Query: 153 FKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADESLTDLEAQPYEAVFLRAV 212
++ KA+ A +L +P E ++YY+ +LD + + +EA+ +F++
Sbjct: 136 YRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDP-ASIEAREDLTMFVKRH 194
Query: 213 KL 214
KL
Sbjct: 195 KL 196
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 36.2 bits (82), Expect = 0.060
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 380 DDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQEPDAKGDEAEAEPEPE 435
+ E E EE E E E+ + E EGEG+ EEG +E + +G+E E E E E
Sbjct: 945 EGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGE 1000
Score = 30.8 bits (68), Expect = 2.5
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 386 EETEPPLEPEDALSDAEFEGEGDYEE----GMYADWWQEPDAKGDEAEAEPEPE 435
EE E E E+ + E EGEG+ EE G + +E + +G+E E E E E
Sbjct: 889 EEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGE 942
Score = 30.4 bits (67), Expect = 3.3
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 378 QSDDEMELEETEPPLEPEDALSDAEFEGEG----DYEEGMYADWWQEPDAKGDEAEAEPE 433
+ ++E E EE E E E+ + E EGEG + EEG + +E + +G+E E E E
Sbjct: 828 EEEEEGEGEEEEGEGEEEEGEGEEE-EGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGE 886
Query: 434 PE 435
E
Sbjct: 887 GE 888
Score = 30.4 bits (67), Expect = 3.3
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 378 QSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQEPDAKGDEAEAEPEPE 435
+ ++E E E E E + + E EGEG+ EEG + +E + +G+E E E + E
Sbjct: 866 EGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEG-EGEGEEEGEGEGEEEEGEGKGE 922
Score = 30.4 bits (67), Expect = 3.3
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 378 QSDDEMELEETEPPLEPEDALSDAEFEGEGDYE---EGMYADWWQ-EPDAKGDEAEAEPE 433
+ + E E EE E E E+ + E EGEG+ E EG + + E + +G+E E E E
Sbjct: 976 EGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGE 1035
Query: 434 PE 435
E
Sbjct: 1036 EE 1037
Score = 30.0 bits (66), Expect = 4.3
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 344 GLEEEDFQPREEAMLYHNQTAELRELLEFTHMYLQSDDEMELEETEPPLEPE--DALSDA 401
G+EE++ + EE + H E E+L SDD + E +A
Sbjct: 600 GIEEQEVEANEENVKVHGGRKEKTEIL--------SDDLTDKAEVSEGKAKSVGEAEDGP 651
Query: 402 EFEGEGDYEEGMY-ADWWQEPD-AKGDEAEAEPEPE 435
E G+G EEG A+ WQ+ + KG++ + E E
Sbjct: 652 EGRGDGTCEEGSSGAEHWQDEEREKGEKDKGRGEME 687
Score = 30.0 bits (66), Expect = 4.3
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 378 QSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQEPDAKGDEAEAEPEPE 435
+ D+ E EE E E+ E EG G+ EEG +E + +G+E E E E E
Sbjct: 789 EEGDQGEGEEEETEGRGEEKEEGGEVEG-GEVEEGKGEREEEEEEGEGEEEEGEGEEE 845
Score = 28.9 bits (63), Expect = 9.6
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 378 QSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQEPDAKGDEAEAEPEPE 435
+ + E E EE E E E + E EGEG+ EEG +E + +G+E E E
Sbjct: 1006 EEEGEGEGEEEEEG-EVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEE 1062
>gi|7705433 eukaryotic translation initiation factor 3 subunit 6
interacting protein [Homo sapiens]
Length = 564
Score = 36.2 bits (82), Expect = 0.060
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 31/206 (15%)
Query: 132 PRQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDV 191
P Q L D YQ+ ++ ++ +K+ FL+ NPK LN ++D
Sbjct: 179 PNQWLWDIIDEFIYQFQSFSQYRCKTAKKS-EEEIDFLRSNPKIWNVHSVLNVLHSLVDK 237
Query: 192 ADESLTDLEAQPYEAVFLRAVKLYNSGDFRSST--EDMERALSEYLAVFARCLAGCEGAH 249
++ + R +++Y SG S E +L + L F+ L G H
Sbjct: 238 SNIN--------------RQLEVYTSGGDPESVAGEYGRHSLYKMLGYFS--LVGLLRLH 281
Query: 250 EQVDFKDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDV 309
+ D+Y AI L E+++ + P T Y+Y+ FAY +
Sbjct: 282 SLLG--DYYQAIKVL--ENIELNKKSMYSRVPECQ--------VTTYYYVGFAYLMMRRY 329
Query: 310 RQAARSAASYMLFDPKDSVMQQNLVY 335
+ A R A+ +L+ + M Q Y
Sbjct: 330 QDAIRVFANILLYIQRTKSMFQRTTY 355
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 33.9 bits (76), Expect = 0.30
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 378 QSDDEMELEETEPPLEPED--ALSD------AEFEGEGDYEEGMYADWWQEPDAKGDEAE 429
+ + E E EE + E ED A SD +E EG + EEG + E +A+G+EAE
Sbjct: 522 EEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAE 581
Query: 430 AEPEPEL 436
A+ E ++
Sbjct: 582 AKEEKKV 588
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 33.9 bits (76), Expect = 0.30
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 378 QSDDEMELEETEPPLEPED--ALSD------AEFEGEGDYEEGMYADWWQEPDAKGDEAE 429
+ + E E EE + E ED A SD +E EG + EEG + E +A+G+EAE
Sbjct: 146 EEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAE 205
Query: 430 AEPEPEL 436
A+ E ++
Sbjct: 206 AKEEKKV 212
>gi|217272863 prolyl 4-hydroxylase, alpha II subunit isoform 1
precursor [Homo sapiens]
Length = 535
Score = 33.9 bits (76), Expect = 0.30
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 147 YLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADE----SLTDLEAQ 202
YL YA+F+ L +A+ L +P HE L Y++ +L+ E + T+ E
Sbjct: 212 YLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEEEREKTLTNQTEAELA 271
Query: 203 PYEAVFLRAV 212
E ++ R V
Sbjct: 272 TPEGIYERPV 281
>gi|217272861 prolyl 4-hydroxylase, alpha II subunit isoform 2
precursor [Homo sapiens]
Length = 533
Score = 33.9 bits (76), Expect = 0.30
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 147 YLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADE----SLTDLEAQ 202
YL YA+F+ L +A+ L +P HE L Y++ +L+ E + T+ E
Sbjct: 212 YLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEEEREKTLTNQTEAELA 271
Query: 203 PYEAVFLRAV 212
E ++ R V
Sbjct: 272 TPEGIYERPV 281
>gi|63252893 prolyl 4-hydroxylase, alpha II subunit isoform 2
precursor [Homo sapiens]
Length = 533
Score = 33.9 bits (76), Expect = 0.30
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 147 YLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADE----SLTDLEAQ 202
YL YA+F+ L +A+ L +P HE L Y++ +L+ E + T+ E
Sbjct: 212 YLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEEEREKTLTNQTEAELA 271
Query: 203 PYEAVFLRAV 212
E ++ R V
Sbjct: 272 TPEGIYERPV 281
>gi|63252891 prolyl 4-hydroxylase, alpha II subunit isoform 2
precursor [Homo sapiens]
Length = 533
Score = 33.9 bits (76), Expect = 0.30
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 147 YLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADE----SLTDLEAQ 202
YL YA+F+ L +A+ L +P HE L Y++ +L+ E + T+ E
Sbjct: 212 YLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEEEREKTLTNQTEAELA 271
Query: 203 PYEAVFLRAV 212
E ++ R V
Sbjct: 272 TPEGIYERPV 281
>gi|4758868 prolyl 4-hydroxylase, alpha II subunit isoform 1
precursor [Homo sapiens]
Length = 535
Score = 33.9 bits (76), Expect = 0.30
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 147 YLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADE----SLTDLEAQ 202
YL YA+F+ L +A+ L +P HE L Y++ +L+ E + T+ E
Sbjct: 212 YLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEEEREKTLTNQTEAELA 271
Query: 203 PYEAVFLRAV 212
E ++ R V
Sbjct: 272 TPEGIYERPV 281
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 32.3 bits (72), Expect = 0.87
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 379 SDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQEPDAKGDEAEAEPEPE 435
SD+E E EE E E E+ + +FE E + EE ++++E + + +E E E E E
Sbjct: 886 SDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEE----EYFEEEEEEEEEFEEEFEEE 938
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 377 LQSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQEPDAKGDEAEAEPEPEL 436
L+S+ E E EE E E E + E EGE + EEG E + G+E E E E ++
Sbjct: 401 LKSEGEEEEEEEEEEEEEEGEGEEEEEEGEEEEEEG------GEGEELGEEEEVEEEGDV 454
>gi|169218106 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 436
Score = 31.2 bits (69), Expect = 1.9
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 346 EEEDFQPREEAMLYHNQTAELRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEG 405
+EE + +EE ML + E E ++ +E E+ E E E+ + + E E
Sbjct: 267 QEEQMREQEEQMLKQKEQTEQEEQTGEQEEQMREQEEQMREQEEQMREQEEQMREQE-EQ 325
Query: 406 EGDYEEGMYAD----W------WQEPDAKGDEAEAEPEPE 435
G EE M+ W W++ + G++ E + E
Sbjct: 326 MGKQEEQMWEQKEQMWEQKEQMWKQEEQMGEQEEQMQKQE 365
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 31.2 bits (69), Expect = 1.9
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 346 EEEDFQPREEAMLYHNQTAELRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEG 405
E+ED + EE + E+ EL E DE E EE E E E + +AE EG
Sbjct: 1016 EDEDSEKEEE-----EEDKEMEELQEEKECEKPQGDEEEEEEEEEVEEEE--VEEAENEG 1068
Query: 406 EGDYEEGMYAD 416
E EG+ D
Sbjct: 1069 EEAKTEGLMKD 1079
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 31.2 bits (69), Expect = 1.9
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 346 EEEDFQPREEAMLYHNQTAELRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEG 405
E+ED + EE + E+ EL E DE E EE E E E + +AE EG
Sbjct: 1032 EDEDSEKEEE-----EEDKEMEELQEEKECEKPQGDEEEEEEEEEVEEEE--VEEAENEG 1084
Query: 406 EGDYEEGMYAD 416
E EG+ D
Sbjct: 1085 EEAKTEGLMKD 1095
>gi|214010183 amyloid beta (A4) precursor-like protein 2 isoform 3
[Homo sapiens]
Length = 695
Score = 31.2 bits (69), Expect = 1.9
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 346 EEEDFQPREEAMLYHNQTAELRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEG 405
EEE+ E+ +Y ++ +L +FT + DDE E EE E +E D D F+G
Sbjct: 223 EEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDE-EEGEEVVEDRDYYYDT-FKG 280
Query: 406 EGDYEE 411
+ DY E
Sbjct: 281 D-DYNE 285
>gi|214010181 amyloid beta (A4) precursor-like protein 2 isoform 2
[Homo sapiens]
Length = 751
Score = 31.2 bits (69), Expect = 1.9
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 346 EEEDFQPREEAMLYHNQTAELRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEG 405
EEE+ E+ +Y ++ +L +FT + DDE E EE E +E D D F+G
Sbjct: 223 EEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDE-EEGEEVVEDRDYYYDT-FKG 280
Query: 406 EGDYEE 411
+ DY E
Sbjct: 281 D-DYNE 285
>gi|4502147 amyloid beta (A4) precursor-like protein 2 isoform 1
[Homo sapiens]
Length = 763
Score = 31.2 bits (69), Expect = 1.9
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 346 EEEDFQPREEAMLYHNQTAELRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEG 405
EEE+ E+ +Y ++ +L +FT + DDE E EE E +E D D F+G
Sbjct: 223 EEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDE-EEGEEVVEDRDYYYDT-FKG 280
Query: 406 EGDYEE 411
+ DY E
Sbjct: 281 D-DYNE 285
>gi|55925466 zinc finger protein 599 [Homo sapiens]
Length = 588
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 351 QPREEAMLYHNQTAELR-----------ELLEFTHMYLQSDDEMELEETEPPLEPEDALS 399
Q R+E L Q LR E L + H L+ DD + L + + P+DAL
Sbjct: 120 QARDEEKLIKIQEGNLRPGTNPHKEICPEKLSYKHDDLEPDDSLGLRVLQERVTPQDALH 179
Query: 400 DAEFEGEG 407
+ + +G G
Sbjct: 180 ECDSQGPG 187
>gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens]
Length = 869
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 366 LRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQEPDAKG 425
LR+ + + LQ D L EPP PE L D E G+ G A WW+ +
Sbjct: 682 LRKAMARGQLLLQRDLG-SLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRT 740
Query: 426 DE 427
E
Sbjct: 741 SE 742
>gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]
Length = 775
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 366 LRELLEFTHMYLQSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQEPDAKG 425
LR+ + + LQ D L EPP PE L D E G+ G A WW+ +
Sbjct: 588 LRKAMARGQLLLQRDLG-SLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRT 646
Query: 426 DE 427
E
Sbjct: 647 SE 648
>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
sapiens]
Length = 528
Score = 30.8 bits (68), Expect = 2.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 378 QSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYA--DWWQEPDAKGDEAE 429
+ ++E + EE PPL P S AE + Y+E A D QE K +EAE
Sbjct: 328 EEEEEEDSEEAPPPLSPPQPASPAEEDKMPPYDEQTQAFIDAAQEARNKFEEAE 381
>gi|218505694 potassium channel tetramerisation domain containing 1
isoform b [Homo sapiens]
Length = 865
Score = 30.8 bits (68), Expect = 2.5
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 378 QSDDEMELEETEPPLEPEDALSDAEFEGEGDYEEGMYADWWQEPDAKGDEAEAEPEPE 435
+ D+ E++ T E ED E + E + EE M DW EP D A E EPE
Sbjct: 62 EEDEIQEVQITGDEEEEEDGGGGLEEDEEEEEEEEMGLDW-DEPLEPEDSAGEELEPE 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,963,656
Number of Sequences: 37866
Number of extensions: 825386
Number of successful extensions: 2798
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2643
Number of HSP's gapped (non-prelim): 137
length of query: 437
length of database: 18,247,518
effective HSP length: 105
effective length of query: 332
effective length of database: 14,271,588
effective search space: 4738167216
effective search space used: 4738167216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.