SF3B1 32477

Name: SF3B1	Sequence: fasta or formatted (144aa)		NCBI GI: 54112119
Description: splicing factor 3b, subunit 1 isoform 2		Referenced in: Capping and Splicing
Other entries for this name: alt prot [1304aa] splicing factor 3b, subunit 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.1 16 2 C cysteine 0.0 0 0 D aspartate 11.1 16 5 E glutamate 8.3 12 1 F phenylalanine 2.8 4 1 G glycine 6.9 10 2 H histidine 2.8 4 1 I isoleucine 6.9 10 2 K lysine 6.2 9 2 L leucine 5.6 8 2 M methionine 1.4 2 1 N asparagine 0.7 1 1 P proline 5.6 8 2 Q glutamine 4.9 7 1 R arginine 4.9 7 2 S serine 7.6 11 3 T threonine 4.9 7 1 V valine 2.1 3 1 W tryptophan 0.0 0 0 Y tyrosine 6.2 9 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 splicing factor 3b, subunit 1 isoform 2 SF3B1 0.963 splicing factor 3b, subunit 1 isoform 1 AATK 0.019 apoptosis-associated tyrosine kinase TNXB 0.015 tenascin XB isoform 1 precursor STXBP5 0.015 syntaxin binding protein 5 (tomosyn) isoform b [Hom... STXBP5 0.015 syntaxin binding protein 5 (tomosyn) isoform a [Hom... LNPEP 0.011 leucyl/cystinyl aminopeptidase isoform 1 LNPEP 0.011 leucyl/cystinyl aminopeptidase isoform 2 LOC643677 0.011 hypothetical protein LOC643677 CSF1R 0.011 colony stimulating factor 1 receptor precursor [Homo... PLCB1 0.011 phosphoinositide-specific phospholipase C beta 1 iso... PLCB1 0.011 phosphoinositide-specific phospholipase C beta 1 iso... LOC643677 0.011 PREDICTED: hypothetical protein LOC643677 LOC643677 0.011 PREDICTED: hypothetical protein LOC643677 LOC643677 0.011 PREDICTED: hypothetical protein LOC643677 PAK2 0.007 p21-activated kinase 2 LOC100293705 0.007 PREDICTED: similar to hCG2043257 BPTF 0.007 bromodomain PHD finger transcription factor isoform ... BPTF 0.007 bromodomain PHD finger transcription factor isoform ... C1orf66 0.007 hypothetical protein LOC51093 isoform 2 C1orf66 0.007 hypothetical protein LOC51093 isoform 1 ZNF320 0.007 zinc finger protein 320 ANP32A 0.007 acidic (leucine-rich) nuclear phosphoprotein 32 famil... LOC100294395 0.007 PREDICTED: similar to serum response factor-related... CD2BP2 0.007 CD2 antigen (cytoplasmic tail) binding protein 2 [Hom... KIAA0776 0.007 hypothetical protein LOC23376 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.