Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 13376617
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376617 prostaglandin E synthase 2 [Homo sapiens]
(377 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376617 prostaglandin E synthase 2 [Homo sapiens] 761 0.0
gi|208431815 protein tyrosine phosphatase, receptor type, K isof... 34 0.25
gi|18860902 protein tyrosine phosphatase, receptor type, K isofo... 34 0.25
gi|33188461 GATA binding protein 4 [Homo sapiens] 32 0.72
gi|118402590 myosin XV [Homo sapiens] 32 0.72
gi|27262638 sperm associated antigen 1 [Homo sapiens] 32 0.94
gi|27262636 sperm associated antigen 1 [Homo sapiens] 32 0.94
gi|39930315 neurexophilin 4 [Homo sapiens] 32 1.2
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 32 1.2
gi|193211480 superkiller viralicidic activity 2-like 2 [Homo sap... 31 1.6
gi|74229025 membralin isoform 1 [Homo sapiens] 31 1.6
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens] 31 1.6
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens] 31 1.6
gi|148539860 protein tyrosine phosphatase, receptor type, T isof... 30 2.7
gi|148539858 protein tyrosine phosphatase, receptor type, T isof... 30 2.7
gi|56549696 E1A binding protein p400 [Homo sapiens] 30 2.7
gi|38787970 tensin like C1 domain containing phosphatase isoform... 30 2.7
gi|38787957 tensin like C1 domain containing phosphatase isoform... 30 2.7
gi|38787941 tensin like C1 domain containing phosphatase isoform... 30 2.7
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 30 2.7
gi|122939153 nicotinamide nucleotide transhydrogenase [Homo sapi... 30 2.7
gi|122939155 nicotinamide nucleotide transhydrogenase [Homo sapi... 30 2.7
gi|151301041 ARP5 actin-related protein 5 homolog [Homo sapiens] 30 3.6
gi|122937327 BTB (POZ) domain containing 17 [Homo sapiens] 30 3.6
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 30 3.6
gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo ... 30 4.6
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 30 4.6
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 30 4.6
gi|145701030 transmembrane protease, serine 4 isoform 3 [Homo sa... 30 4.6
gi|15451940 transmembrane protease, serine 4 isoform 1 [Homo sap... 30 4.6
>gi|13376617 prostaglandin E synthase 2 [Homo sapiens]
Length = 377
Score = 761 bits (1964), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MDPAARVVRALWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLG 60
MDPAARVVRALWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLG
Sbjct: 1 MDPAARVVRALWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLG 60
Query: 61 AAALALGGALGLYHTARWHLRAQDLHAERSAAQLSLSSRLQLTLYQYKTCPFCSKVRAFL 120
AAALALGGALGLYHTARWHLRAQDLHAERSAAQLSLSSRLQLTLYQYKTCPFCSKVRAFL
Sbjct: 61 AAALALGGALGLYHTARWHLRAQDLHAERSAAQLSLSSRLQLTLYQYKTCPFCSKVRAFL 120
Query: 121 DFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQ 180
DFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQ
Sbjct: 121 DFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQ 180
Query: 181 PLEEIITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWRQWADD 240
PLEEIITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWRQWADD
Sbjct: 181 PLEEIITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWRQWADD 240
Query: 241 WLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQ 300
WLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQ
Sbjct: 241 WLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQ 300
Query: 301 DNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQ 360
DNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQ
Sbjct: 301 DNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQ 360
Query: 361 PWYLRVERAITEASPAH 377
PWYLRVERAITEASPAH
Sbjct: 361 PWYLRVERAITEASPAH 377
>gi|208431815 protein tyrosine phosphatase, receptor type, K isoform a
[Homo sapiens]
Length = 1446
Score = 33.9 bits (76), Expect = 0.25
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 146 RKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNEQGKEVTEF 205
R +P L+ +GESS +N + + +Y QP I+T YP V + + V ++
Sbjct: 1221 RCLPFLITIDGESSNYIN-----AALMDSYR---QPAAFIVTQYPLPNTVKDFWRLVYDY 1272
Query: 206 GNKYWLMLNEKEAQQ 220
G +MLNE + Q
Sbjct: 1273 GCTSIVMLNEVDLSQ 1287
>gi|18860902 protein tyrosine phosphatase, receptor type, K isoform b
[Homo sapiens]
Length = 1440
Score = 33.9 bits (76), Expect = 0.25
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 146 RKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNEQGKEVTEF 205
R +P L+ +GESS +N + + +Y QP I+T YP V + + V ++
Sbjct: 1215 RCLPFLITIDGESSNYIN-----AALMDSYR---QPAAFIVTQYPLPNTVKDFWRLVYDY 1266
Query: 206 GNKYWLMLNEKEAQQ 220
G +MLNE + Q
Sbjct: 1267 GCTSIVMLNEVDLSQ 1281
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 32.3 bits (72), Expect = 0.72
Identities = 25/62 (40%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 4 AARVVRALWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLGAAA 63
AAR A GG A L GR Q RAGFAG+ P P A G+ AAA
Sbjct: 125 AAREAAAYSSGGGAAGAGLAGREQ-----YGRAGFAGSYSSPYPAYMADVGASWAAAAAA 179
Query: 64 LA 65
A
Sbjct: 180 SA 181
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 32.3 bits (72), Expect = 0.72
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 18/125 (14%)
Query: 241 WLVH----LISPNVYRTPTEALASFD-YIVREGKFGAVEGAVAKYMGAAAMYLISKRLKS 295
WL+ L+SP R T ++A D Y + F + E Y YL +K +
Sbjct: 1566 WLITRVNALVSP---RQDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIV-- 1620
Query: 296 RHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQ 355
Q+ E + E D ++P + NL L YG+LR+++ F
Sbjct: 1621 ---FQEEQEEYIREQIDWQEITFADNQPCI-----NLISLKPYGILRILDDQCCFPQATD 1672
Query: 356 HTHIQ 360
HT +Q
Sbjct: 1673 HTFLQ 1677
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 32.0 bits (71), Expect = 0.94
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 13 PGGCALAWR--LGGRPQPLLPTQSRAGFAGAAGGP----SPVAAARKGSPRLLGAAALAL 66
P G A A + + G Q L ++ G A G P +P A A K SPR AAA A
Sbjct: 370 PAGAARAAQPCVMGNIQKKLTGKAEGGKRPARGAPQRGQTPEAGADKRSPRRASAAAAAG 429
Query: 67 GGALG 71
GGA G
Sbjct: 430 GGATG 434
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 32.0 bits (71), Expect = 0.94
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 13 PGGCALAWR--LGGRPQPLLPTQSRAGFAGAAGGP----SPVAAARKGSPRLLGAAALAL 66
P G A A + + G Q L ++ G A G P +P A A K SPR AAA A
Sbjct: 370 PAGAARAAQPCVMGNIQKKLTGKAEGGKRPARGAPQRGQTPEAGADKRSPRRASAAAAAG 429
Query: 67 GGALG 71
GGA G
Sbjct: 430 GGATG 434
>gi|39930315 neurexophilin 4 [Homo sapiens]
Length = 308
Score = 31.6 bits (70), Expect = 1.2
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 20 WRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKG---SPRLLGAAALALGGALGL 72
W G P PL T + G G P +AAA G L GA A LGGALG+
Sbjct: 167 WLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLGGALGV 222
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 31.6 bits (70), Expect = 1.2
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 2 DPAARVVRALWPGGCALAWRLGG-RPQPLLPTQSRAGFAGAAGGPSPVAAAR--KGSPRL 58
DP R+ AL P WR GG P P P+ S G AG GG S A R + PR
Sbjct: 1034 DPPPRL--ALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSSQGPALRYFQLPPRA 1091
Query: 59 LGAA 62
AA
Sbjct: 1092 ASAA 1095
>gi|193211480 superkiller viralicidic activity 2-like 2 [Homo
sapiens]
Length = 1042
Score = 31.2 bits (69), Expect = 1.6
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 17/85 (20%)
Query: 128 QVVEVNP---VRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEE 184
+V E+NP + ++ +F YR +P +V + S +Q N ++I P EE
Sbjct: 575 RVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYN--KIVI-----------PNEE 621
Query: 185 -IITYYPAMKAVNEQGKEVTEFGNK 208
++ YY + + + GKE+ E+ +K
Sbjct: 622 SVVIYYKIRQQLAKLGKEIEEYIHK 646
>gi|74229025 membralin isoform 1 [Homo sapiens]
Length = 620
Score = 31.2 bits (69), Expect = 1.6
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 14 GGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLGAAALALGGALG 71
G A A G+P L P GA+G P PVAAA + A A GG LG
Sbjct: 487 GAPATAPDSAGQPPALGPVSP-----GASGSPGPVAAAPSSLVAAAASVAAAAGGDLG 539
>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
Length = 973
Score = 31.2 bits (69), Expect = 1.6
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 2 DPAARVVRALWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSP 56
+P RV RAL L GGRP PL T + + A GG P A A GSP
Sbjct: 680 EPPGRVFRAL------LVISDGGRP-PLTTTATVSFVVTAGGGRGPAAPASAGSP 727
>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
Length = 1070
Score = 31.2 bits (69), Expect = 1.6
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 2 DPAARVVRALWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSP 56
+P RV RAL L GGRP PL T + + A GG P A A GSP
Sbjct: 680 EPPGRVFRAL------LVISDGGRP-PLTTTATVSFVVTAGGGRGPAAPASAGSP 727
>gi|148539860 protein tyrosine phosphatase, receptor type, T isoform 2
precursor [Homo sapiens]
Length = 1441
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 146 RKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNEQGKEVTEF 205
R +P L++ +GESS +N + ++ + K QP ++T +P V + + V ++
Sbjct: 1216 RCLPFLISVDGESSNYIN--AALMDSHK------QPAAFVVTQHPLPNTVADFWRLVFDY 1267
Query: 206 GNKYWLMLNEKEAQQ 220
+MLNE + Q
Sbjct: 1268 NCSSVVMLNEMDTAQ 1282
>gi|148539858 protein tyrosine phosphatase, receptor type, T isoform 1
precursor [Homo sapiens]
Length = 1460
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 146 RKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNEQGKEVTEF 205
R +P L++ +GESS +N + ++ + K QP ++T +P V + + V ++
Sbjct: 1235 RCLPFLISVDGESSNYIN--AALMDSHK------QPAAFVVTQHPLPNTVADFWRLVFDY 1286
Query: 206 GNKYWLMLNEKEAQQ 220
+MLNE + Q
Sbjct: 1287 NCSSVVMLNEMDTAQ 1301
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 30.4 bits (67), Expect = 2.7
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 176 LVSGQPLEEIITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWR 235
LVSG +EE + + E + ++ + +E +VY + +K
Sbjct: 1984 LVSGNSIEEKLLKNGTKDLIREVAAQGNDYSMAFLTQRTIQELFEVYSPMDDAGFPVKAE 2043
Query: 236 QWA----DDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGA 283
++ + + I+P + R EAL S +Y+ + + A EG + + A
Sbjct: 2044 EFVVLSQEPSVTETIAPKIARPFIEALKSIEYLEEDAQKSAQEGVLGPHTDA 2095
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 30.4 bits (67), Expect = 2.7
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 26 PQPLLPTQSRAGF---------AGAAGGPSPVAAARKGSPRLLGAAALALGG 68
P P+L S +G A + G P P AA R+ RLLG +A GG
Sbjct: 379 PPPMLSVSSDSGHSSTLTTEPAAESPGRPPPTAAERQELDRLLGGCGVASGG 430
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 30.4 bits (67), Expect = 2.7
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 26 PQPLLPTQSRAGF---------AGAAGGPSPVAAARKGSPRLLGAAALALGG 68
P P+L S +G A + G P P AA R+ RLLG +A GG
Sbjct: 503 PPPMLSVSSDSGHSSTLTTEPAAESPGRPPPTAAERQELDRLLGGCGVASGG 554
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 30.4 bits (67), Expect = 2.7
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 26 PQPLLPTQSRAGF---------AGAAGGPSPVAAARKGSPRLLGAAALALGG 68
P P+L S +G A + G P P AA R+ RLLG +A GG
Sbjct: 513 PPPMLSVSSDSGHSSTLTTEPAAESPGRPPPTAAERQELDRLLGGCGVASGG 564
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 30.4 bits (67), Expect = 2.7
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 26 PQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLGAAALALGGALGLYHTARWHLRAQDL 85
P P QS A AG P+ A + SP G+ A +L +LG+ A
Sbjct: 495 PGPPREGQSPASQAGTQHPPAQATAHSQSSPEFKGSLA-SLSDSLGVSVMATDQDSYSTS 553
Query: 86 HAERSAAQLSL-------SSRLQLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVRRA 138
E Q S S L ++ F S AFL + Y+ V V A
Sbjct: 554 STEEELEQFSSPSVKKKPSMILGKARHRLSFASFSSMFHAFLSNNRKLYKKV----VELA 609
Query: 139 EIKFS-------SYRKVPI-LVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYP 190
+ K S Y+ + ++A++ S++ L + +++ LK+YL+ L+ ++ P
Sbjct: 610 QDKGSYFGSLVQDYKVYSLEMMARQTSSTEMLQEIRTMMTQLKSYLLQSTELKALVD--P 667
Query: 191 AMKAVNE 197
A+ + E
Sbjct: 668 ALHSEEE 674
>gi|122939153 nicotinamide nucleotide transhydrogenase [Homo
sapiens]
Length = 1086
Score = 30.4 bits (67), Expect = 2.7
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 11 LWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLG--AAALALGG 68
L G C + G Q + G G AGG + K P LL + A+ALGG
Sbjct: 625 LGSGLCCVGALAGLSTQGTARLGNALGMIGVAGGLAATLGVLKPGPELLAQMSGAMALGG 684
Query: 69 ALGL 72
+GL
Sbjct: 685 TIGL 688
>gi|122939155 nicotinamide nucleotide transhydrogenase [Homo
sapiens]
Length = 1086
Score = 30.4 bits (67), Expect = 2.7
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 11 LWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLG--AAALALGG 68
L G C + G Q + G G AGG + K P LL + A+ALGG
Sbjct: 625 LGSGLCCVGALAGLSTQGTARLGNALGMIGVAGGLAATLGVLKPGPELLAQMSGAMALGG 684
Query: 69 ALGL 72
+GL
Sbjct: 685 TIGL 688
>gi|151301041 ARP5 actin-related protein 5 homolog [Homo sapiens]
Length = 607
Score = 30.0 bits (66), Expect = 3.6
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 23 GGRPQPLL----PTQSRAGFA--GAAGGPSP------VAAARKGSPRLLGAAALALGGAL 70
G P PL+ Q RAG+A G GP P V A +G R GA+ +G AL
Sbjct: 27 GPLPVPLVLDNGSFQVRAGWACPGQDPGPEPRLQFRAVCARGRGGAR--GASGPQVGNAL 84
Query: 71 GLYHTARWHLRA 82
G RW LR+
Sbjct: 85 GSLEPLRWMLRS 96
>gi|122937327 BTB (POZ) domain containing 17 [Homo sapiens]
Length = 478
Score = 30.0 bits (66), Expect = 3.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 15 GCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLGAAALALGGALGL 72
G + W + P+ LP R +A AAG P A G PRL+ A + G A G+
Sbjct: 351 GRRVTWNVLFSPR-WLPVSLRPVYADAAGTALPAARPEDGRPRLVVTPASSGGDAAGV 407
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 30.0 bits (66), Expect = 3.6
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 23 GGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLGAAALALGGALGLYHTAR 77
GG P P P ++ AGG A + GSP L AAA + G+L T+R
Sbjct: 132 GGSP-PARPIPGQSAAPTLAGGGGGAAGSTPGSPVFLSAAAGSTAGSLRELATSR 185
>gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo
sapiens]
Length = 176
Score = 29.6 bits (65), Expect = 4.6
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 17 ALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLGAAALALGGALGLYHTA 76
A A R RP PL +RAG A + P R+G+ RL A A G YH+A
Sbjct: 48 AAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPA-----GPYHSA 102
Query: 77 R 77
R
Sbjct: 103 R 103
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 29.6 bits (65), Expect = 4.6
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 17 ALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLGAAALALGGALGLYHTA 76
A A R RP PL +RAG A + P R+G+ RL A A G YH+A
Sbjct: 48 AAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPA-----GPYHSA 102
Query: 77 R 77
R
Sbjct: 103 R 103
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 29.6 bits (65), Expect = 4.6
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 17 ALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLGAAALALGGALGLYHTA 76
A A R RP PL +RAG A + P R+G+ RL A A G YH+A
Sbjct: 48 AAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPA-----GPYHSA 102
Query: 77 R 77
R
Sbjct: 103 R 103
>gi|145701030 transmembrane protease, serine 4 isoform 3 [Homo
sapiens]
Length = 432
Score = 29.6 bits (65), Expect = 4.6
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 126 PYQVVEVNPVRRAEIKFSSYRKV--PILVAQEGESSQQLNDSSVIISALKTYLVSGQPLE 183
P ++V P+R+ I ++RKV PI++A +S + + + K Y + GQPL
Sbjct: 10 PLNSLDVKPLRKPRIPMETFRKVGIPIIIALLSLASIIIVVVLIKVILDKYYFLCGQPLH 69
Query: 184 EI 185
I
Sbjct: 70 FI 71
>gi|15451940 transmembrane protease, serine 4 isoform 1 [Homo
sapiens]
Length = 437
Score = 29.6 bits (65), Expect = 4.6
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 126 PYQVVEVNPVRRAEIKFSSYRKV--PILVAQEGESSQQLNDSSVIISALKTYLVSGQPLE 183
P ++V P+R+ I ++RKV PI++A +S + + + K Y + GQPL
Sbjct: 10 PLNSLDVKPLRKPRIPMETFRKVGIPIIIALLSLASIIIVVVLIKVILDKYYFLCGQPLH 69
Query: 184 EI 185
I
Sbjct: 70 FI 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,355,882
Number of Sequences: 37866
Number of extensions: 653793
Number of successful extensions: 2299
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2274
Number of HSP's gapped (non-prelim): 55
length of query: 377
length of database: 18,247,518
effective HSP length: 104
effective length of query: 273
effective length of database: 14,309,454
effective search space: 3906480942
effective search space used: 3906480942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.