| Name: PDZD7 | Sequence: fasta or formatted (517aa) | NCBI GI: 13376349 | |
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Description: PDZ domain containing 7
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Referenced in: Auditory and Vestibular Functions
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 5.4 28 2 C cysteine 1.7 9 2 D aspartate 5.0 26 2 E glutamate 6.2 32 2 F phenylalanine 2.1 11 2 G glycine 11.4 59 2 H histidine 1.7 9 1 I isoleucine 4.1 21 2 K lysine 4.8 25 2 L leucine 9.3 48 3 M methionine 2.3 12 2 N asparagine 1.9 10 1 P proline 5.0 26 2 Q glutamine 2.9 15 2 R arginine 8.3 43 2 S serine 13.2 68 4 T threonine 5.0 26 2 V valine 6.6 34 2 W tryptophan 1.2 6 1 Y tyrosine 1.7 9 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 PDZ domain containing 7 DFNB31 0.141 CASK-interacting protein CIP98 isoform 1 USH1C 0.083 harmonin isoform b3 USH1C 0.083 harmonin isoform a SCRIB 0.052 scribble isoform b SCRIB 0.052 scribble isoform a LOC100133567 0.048 PREDICTED: similar to Rap guanine nucleotide exchan... RAPGEF2 0.048 Rap guanine nucleotide exchange factor 2 DLG4 0.046 post-synaptic density protein 95 isoform 1 DLG4 0.046 post-synaptic density protein 95 isoform 2 RAPGEF6 0.045 PDZ domain-containing guanine nucleotide exchange fa... PDZD11 0.045 PDZ domain containing 11 MPDZ 0.044 multiple PDZ domain protein INADL 0.043 InaD-like DLG2 0.043 chapsyn-110 isoform 3 DLG3 0.042 synapse-associated protein 102 isoform a LIN7B 0.040 lin-7 homolog B LIN7C 0.039 lin-7 homolog C DLG2 0.037 chapsyn-110 isoform 1 DLG2 0.037 chapsyn-110 isoform 2 LIN7A 0.037 lin-7 homolog A LNX1 0.037 ligand of numb-protein X 1 isoform a LNX1 0.037 ligand of numb-protein X 1 isoform b MAGI1 0.037 membrane associated guanylate kinase, WW and PDZ dom... MAGI1 0.037 membrane associated guanylate kinase, WW and PDZ dom... MAGI1 0.037 membrane associated guanylate kinase, WW and PDZ dom... PDZK1 0.037 PDZ domain containing 1 MAGI2 0.036 membrane associated guanylate kinase, WW and PDZ dom... PARD3B 0.034 par-3 partitioning defective 3 homolog B isoform a ... PARD3B 0.034 par-3 partitioning defective 3 homolog B isoform c ...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
