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Search of human proteins with 51317351
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51317351 RNA binding motif, single stranded interacting
protein 3 isoform 2 [Homo sapiens]
(420 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51317351 RNA binding motif, single stranded interacting prote... 861 0.0
gi|51317355 RNA binding motif, single stranded interacting prote... 851 0.0
gi|51317353 RNA binding motif, single stranded interacting prote... 795 0.0
gi|4506447 RNA binding motif, single stranded interacting protei... 613 e-176
gi|8400718 RNA binding motif, single stranded interacting protei... 608 e-174
gi|4506449 RNA binding motif, single stranded interacting protei... 554 e-158
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 117 2e-26
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 114 2e-25
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 113 3e-25
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 113 3e-25
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 113 3e-25
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 113 3e-25
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 105 1e-22
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 105 1e-22
gi|38201714 ELAV-like 1 [Homo sapiens] 101 1e-21
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 84 2e-16
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 82 1e-15
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 81 2e-15
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 81 2e-15
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 81 2e-15
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 79 6e-15
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 78 1e-14
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 78 2e-14
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 74 2e-13
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 74 2e-13
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 73 4e-13
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 72 9e-13
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 69 8e-12
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 68 1e-11
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 68 2e-11
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 861 bits (2225), Expect = 0.0
Identities = 420/420 (100%), Positives = 420/420 (100%)
Query: 1 MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 60
MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK
Sbjct: 1 MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 60
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA
Sbjct: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
Query: 121 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 180
SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR
Sbjct: 121 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 180
Query: 181 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 240
GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG
Sbjct: 181 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 240
Query: 241 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQST 300
RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQST
Sbjct: 241 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQST 300
Query: 301 SWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQG 360
SWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQG
Sbjct: 301 SWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQG 360
Query: 361 TYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSK 420
TYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSK
Sbjct: 361 TYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSK 420
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 851 bits (2198), Expect = 0.0
Identities = 420/436 (96%), Positives = 420/436 (96%), Gaps = 16/436 (3%)
Query: 1 MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 60
MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK
Sbjct: 1 MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 60
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA
Sbjct: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
Query: 121 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 180
SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR
Sbjct: 121 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 180
Query: 181 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 240
GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG
Sbjct: 181 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 240
Query: 241 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQST 300
RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQST
Sbjct: 241 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQST 300
Query: 301 SWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGT---------- 350
SWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGT
Sbjct: 301 SWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMIL 360
Query: 351 ------YMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV 404
YMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV
Sbjct: 361 HQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV 420
Query: 405 DTSNEHAPAYSYQQSK 420
DTSNEHAPAYSYQQSK
Sbjct: 421 DTSNEHAPAYSYQQSK 436
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 795 bits (2053), Expect = 0.0
Identities = 402/436 (92%), Positives = 402/436 (92%), Gaps = 34/436 (7%)
Query: 1 MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 60
MGKRLDQPQMYPQYTYYYPHYLQTK SYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK
Sbjct: 1 MGKRLDQPQMYPQYTYYYPHYLQTK-SYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK 59
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA
Sbjct: 60 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 119
Query: 121 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 180
SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR
Sbjct: 120 SLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSR 179
Query: 181 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 240
GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG
Sbjct: 180 GVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNG 239
Query: 241 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQST 300
RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQ
Sbjct: 240 RPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQ---- 295
Query: 301 SWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGT---------- 350
GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGT
Sbjct: 296 -------------GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMIL 342
Query: 351 ------YMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV 404
YMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV
Sbjct: 343 HQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAV 402
Query: 405 DTSNEHAPAYSYQQSK 420
DTSNEHAPAYSYQQSK
Sbjct: 403 DTSNEHAPAYSYQQSK 418
>gi|4506447 RNA binding motif, single stranded interacting protein 1
isoform c [Homo sapiens]
Length = 403
Score = 613 bits (1581), Expect = e-176
Identities = 315/424 (74%), Positives = 354/424 (83%), Gaps = 25/424 (5%)
Query: 1 MGKRLDQPQMYPQY-TYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ 57
MGK Q QMYPQY TYYYP YLQ KQS PA HPMAPPSPST SS+NNSS+ NS +Q
Sbjct: 1 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ 58
Query: 58 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK 117
LSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSPAAAQK
Sbjct: 59 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK 118
Query: 118 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG 177
AV++LKA+GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD++G
Sbjct: 119 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 178
Query: 178 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT 237
SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +KY
Sbjct: 179 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI 238
Query: 238 QNGRPWPREGEAGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQ 296
NGRPW REGEAGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASPVS YQ
Sbjct: 239 PNGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASPVSAYQ 297
Query: 297 VQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAA 356
VQS SWM PY++Q GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGTYM A +
Sbjct: 298 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 357
Query: 357 PMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSY 416
MQG Y+PQY + TAV +E + SG QQQ+AV+TSN+H+P Y++
Sbjct: 358 AMQGAYLPQYAHMQTTAVPVE----------------EASG-QQQVAVETSNDHSP-YTF 399
Query: 417 QQSK 420
Q +K
Sbjct: 400 QPNK 403
>gi|8400718 RNA binding motif, single stranded interacting protein 1
isoform a [Homo sapiens]
Length = 406
Score = 608 bits (1567), Expect = e-174
Identities = 315/427 (73%), Positives = 354/427 (82%), Gaps = 28/427 (6%)
Query: 1 MGKRLDQPQMYPQY-TYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ 57
MGK Q QMYPQY TYYYP YLQ KQS PA HPMAPPSPST SS+NNSS+ NS +Q
Sbjct: 1 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ 58
Query: 58 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK 117
LSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSPAAAQK
Sbjct: 59 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK 118
Query: 118 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG 177
AV++LKA+GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD++G
Sbjct: 119 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 178
Query: 178 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT 237
SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +KY
Sbjct: 179 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI 238
Query: 238 QNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVS 293
NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASPVS
Sbjct: 239 PNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASPVS 297
Query: 294 TYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMT 353
YQVQS SWM PY++Q GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGTYM
Sbjct: 298 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMP 357
Query: 354 AAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPA 413
A + MQG Y+PQY + TAV +E + SG QQQ+AV+TSN+H+P
Sbjct: 358 ATSAMQGAYLPQYAHMQTTAVPVE----------------EASG-QQQVAVETSNDHSP- 399
Query: 414 YSYQQSK 420
Y++Q +K
Sbjct: 400 YTFQPNK 406
>gi|4506449 RNA binding motif, single stranded interacting protein 2
[Homo sapiens]
Length = 407
Score = 554 bits (1427), Expect = e-158
Identities = 275/406 (67%), Positives = 325/406 (80%), Gaps = 29/406 (7%)
Query: 25 KQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 84
K+ Y MAPPSPS NS+ N+SS ++ +QLSKTNLYIRGL PGTTDQDL+KLCQPY
Sbjct: 21 KKPYVSLAQQMAPPSPS-NSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPY 79
Query: 85 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYI 144
GKIVSTKAILDK TN+CKGYGFVDFDSP+AAQKAV +LKA+GVQAQMAKQQEQDPTNLYI
Sbjct: 80 GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYI 139
Query: 145 SNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKY 204
SNLP+SMDEQELE MLKPFG VISTRILRD +G SRGVGFARMESTEKCE +I HFNGKY
Sbjct: 140 SNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKY 199
Query: 205 LKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAG-MALTYDPTAAIQN 263
+KTPPG+PAPS+PLLCKFADGG KKRQNQ K+ QNGR WPR + G MALTYDPT A+QN
Sbjct: 200 IKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNADMGVMALTYDPTTALQN 259
Query: 264 GFYSSPYSIATNRMIPQTSITPFIAASPVSTY---------QVQSTSWMPHPPYVMQPTG 314
GFY +PY+I NRM+ Q++++P++ +SPVS+Y QV + SWM H Y+MQP+G
Sbjct: 260 GFYPAPYNITPNRMLAQSALSPYL-SSPVSSYQRVTQTSPLQVPNPSWMHHHSYLMQPSG 318
Query: 315 AVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAV 374
+V+TP MDHP+S+QPA+MMGPLTQQ+ HLSL +TGTYM AA MQG YI QYTPVP ++V
Sbjct: 319 SVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAAAMQGAYISQYTPVPSSSV 378
Query: 375 SIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSK 420
S+E ++SGQQ Q+AVD +EH YS+Q +K
Sbjct: 379 SVE----------------ESSGQQNQVAVDAPSEHG-VYSFQFNK 407
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 117 bits (293), Expect = 2e-26
Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 16/225 (7%)
Query: 22 LQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLC 81
++T+ S P + A P+T +++ +S +S + SKTNL + LP T ++L L
Sbjct: 1 METQLSNGPTCNNTAN-GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59
Query: 82 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT- 140
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Query: 141 ------NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKC 193
NLY+S LP +M ++ELE + +G +I++RIL D G+SRGVGF R + +
Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
Query: 194 EVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQ 238
E I+ NG + PPG +EP+ KFA+ +K NQ+ +Q
Sbjct: 180 EEAIKGLNG---QKPPG---ATEPITVKFANNPSQK-TNQAILSQ 217
Score = 48.1 bits (113), Expect = 1e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
+++ L P + L ++ P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Score = 38.9 bits (89), Expect = 0.009
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 200
+++ NL DE L M PFG V + +++RD N +G GF M + ++ + I
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 201 NG 202
NG
Sbjct: 338 NG 339
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 114 bits (285), Expect = 2e-25
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 23/225 (10%)
Query: 22 LQTKQSYAPAPHPMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGT 72
++ K P P++N+S+ SSNN + SKTNL + LP
Sbjct: 1 MRLKNQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNM 60
Query: 73 TDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMA 132
T ++ L G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q +
Sbjct: 61 TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 120
Query: 133 KQQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 184
K P+ NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF
Sbjct: 121 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 180
Query: 185 ARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 229
R + + E I+ NG + P G +EP+ KFA+ +K
Sbjct: 181 IRFDKRIEAEEAIKGLNG---QKPSG---ATEPITVKFANNPSQK 219
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
+++ L P + + L +L P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 200
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 201 NG 202
NG
Sbjct: 348 NG 349
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 113 bits (283), Expect = 3e-25
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 34 PMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 84
P P++N+S+ SSNN + SKTNL + LP T ++ L
Sbjct: 10 PQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSI 69
Query: 85 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT---- 140
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 70 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 129
Query: 141 ---NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVV 196
NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF R + + E
Sbjct: 130 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 189
Query: 197 IQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 229
I+ NG + P G +EP+ KFA+ +K
Sbjct: 190 IKGLNG---QKPSG---ATEPITVKFANNPSQK 216
Score = 50.4 bits (119), Expect = 3e-06
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 30 PAPHPMAPP--SPST-NSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGK 86
P P PP SP T + ++ N G + +++ L P + + L +L P+G
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 87 IVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
+ + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 200
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 201 NG 202
NG
Sbjct: 359 NG 360
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 113 bits (283), Expect = 3e-25
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 34 PMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 84
P P++N+S+ SSNN + SKTNL + LP T ++ L
Sbjct: 10 PQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSI 69
Query: 85 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT---- 140
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 70 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 129
Query: 141 ---NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVV 196
NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF R + + E
Sbjct: 130 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 189
Query: 197 IQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 229
I+ NG + P G +EP+ KFA+ +K
Sbjct: 190 IKGLNG---QKPSG---ATEPITVKFANNPSQK 216
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
+++ L P + + L +L P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 200
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 201 NG 202
NG
Sbjct: 345 NG 346
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 113 bits (283), Expect = 3e-25
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 34 PMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 84
P P++N+S+ SSNN + SKTNL + LP T ++ L
Sbjct: 27 PQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSI 86
Query: 85 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT---- 140
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 87 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 146
Query: 141 ---NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVV 196
NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF R + + E
Sbjct: 147 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 206
Query: 197 IQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 229
I+ NG + P G +EP+ KFA+ +K
Sbjct: 207 IKGLNG---QKPSG---ATEPITVKFANNPSQK 233
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
+++ L P + + L +L P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 200
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 201 NG 202
NG
Sbjct: 362 NG 363
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 113 bits (283), Expect = 3e-25
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 34 PMAPPSPSTNSSSNNSSNN---------SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 84
P P++N+S+ SSNN + SKTNL + LP T ++ L
Sbjct: 10 PQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSI 69
Query: 85 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT---- 140
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 70 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 129
Query: 141 ---NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVV 196
NLY+S LP +M ++ELE + +G +I++RIL D GVSRGVGF R + + E
Sbjct: 130 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 189
Query: 197 IQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 229
I+ NG + P G +EP+ KFA+ +K
Sbjct: 190 IKGLNG---QKPSG---ATEPITVKFANNPSQK 216
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
+++ L P + + L +L P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 200
+++ NL DE L + PFG V + +++RD N +G GF M + ++ + I
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 201 NG 202
NG
Sbjct: 345 NG 346
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 105 bits (261), Expect = 1e-22
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 37 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
Query: 150 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 208
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
Query: 209 PGIPAPSEPLLCKFADGGQKK 229
G +EP+ KFA+ +K
Sbjct: 192 LG---AAEPITVKFANNPSQK 209
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Score = 36.6 bits (83), Expect = 0.044
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 200
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 201 NG 202
NG
Sbjct: 346 NG 347
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 105 bits (261), Expect = 1e-22
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 37 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
Query: 150 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 208
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
Query: 209 PGIPAPSEPLLCKFADGGQKK 229
G +EP+ KFA+ +K
Sbjct: 192 LG---AAEPITVKFANNPSQK 209
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Score = 36.6 bits (83), Expect = 0.044
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 200
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 201 NG 202
NG
Sbjct: 339 NG 340
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 101 bits (252), Expect = 1e-21
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 42 TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQC 101
+N ++ + + G+ + +TNL + LP T +L L G++ S K I DK
Sbjct: 2 SNGYEDHMAEDCRGD-IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 102 KGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPISMDEQ 154
GYGFV++ + A++A+ +L +Q++ K P+ NLYIS LP +M ++
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Query: 155 ELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPA 213
++E+M FG +I++R+L D G+SRGV F R + + E I FNG PPG
Sbjct: 121 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPG--- 174
Query: 214 PSEPLLCKFA 223
SEP+ KFA
Sbjct: 175 SSEPITVKFA 184
Score = 47.0 bits (110), Expect = 3e-05
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 34 PMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAI 93
PM S S N N SSG ++I L + L ++ P+G + + K I
Sbjct: 222 PMGVDHMSGLSGVNVPGNASSG-----WCIFIYNLGQDADEGILWQMFGPFGAVTNVKVI 276
Query: 94 LDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
D NTN+CKG+GFV + A A+ASL
Sbjct: 277 RDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Score = 45.4 bits (106), Expect = 9e-05
Identities = 47/209 (22%), Positives = 71/209 (33%), Gaps = 60/209 (28%)
Query: 54 SGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK----------------- 96
S E + NLYI GLP T +D+ + +G+I++++ ++D+
Sbjct: 99 SSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRS 158
Query: 97 ---------------------------NTNQCKGYGFVD---------FDSPAAAQKAVA 120
N NQ K + F P Q
Sbjct: 159 EAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRF 218
Query: 121 SLKANGVQAQMAKQQEQDPTN------LYISNLPISMDEQELENMLKPFGHVISTRILRD 174
GV P N ++I NL DE L M PFG V + +++RD
Sbjct: 219 RFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRD 278
Query: 175 AN-GVSRGVGFARMESTEKCEVVIQHFNG 202
N +G GF M + E+ + I NG
Sbjct: 279 FNTNKCKGFGFVTMTNYEEAAMAIASLNG 307
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 21/159 (13%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
N++I+ L ++ L +G I+S K D++ + +G+GFV F++ AAQ+A+ +
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGS--RGFGFVHFETHEAAQQAINT 157
Query: 122 LKANGVQAQMAK--------QQEQDP---------TNLYISNLPISMDEQELENMLKPFG 164
+ NG+ K ++E++ TN+Y+ NLP+ +DEQ L+++ FG
Sbjct: 158 M--NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG 215
Query: 165 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
++S +++RD +G SR GF E E+ + + H NGK
Sbjct: 216 KMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGK 254
Score = 79.3 bits (194), Expect = 6e-15
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 58 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK 117
L TN+Y++ LP +Q L L +GK++S K + D N+ + +GFV+F+ AQK
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQK 246
Query: 118 AVASLKANGVQAQMA-------------------KQQEQDP------TNLYISNLPISMD 152
AV + V ++ +Q +QD NLY+ NL S+D
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSID 306
Query: 153 EQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPP 209
+ +L P+G + S +++ + G S+G GF S E+ + NG+ + T P
Sbjct: 307 DDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Score = 78.6 bits (192), Expect = 1e-14
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 52 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 111
N+SG +LY+ L P T+ L + P G I+S + D T + GY +++F
Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 112 PAAAQKAVASLKANGVQAQMAK--QQEQDP-------TNLYISNLPISMDEQELENMLKP 162
PA A++A+ ++ ++ Q + ++DP N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 163 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
FG+++S ++ D +G SRG GF E+ E + I NG L
Sbjct: 122 FGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLL 163
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 81.6 bits (200), Expect = 1e-15
Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 10/163 (6%)
Query: 52 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 111
N S +LY+ L P T+ L + P G I+S + D T + GY +V+F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 112 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 162
PA A++A+ ++ + ++ + + ++DP+ N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 163 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
FG+++S +++ D NG S+G GF E+ E E I+ NG L
Sbjct: 122 FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 80.5 bits (197), Expect = 3e-15
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 21/161 (13%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
N++I+ L ++ L +G I+S K + D+N + KGYGFV F++ AA++A+
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIE- 156
Query: 122 LKANGV----------QAQMAKQQE-------QDPTNLYISNLPISMDEQELENMLKPFG 164
K NG+ + + K++E ++ TN+YI N MD++ L+++ FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 165 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
+S +++ D +G S+G GF E E + + NGK L
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Score = 77.4 bits (189), Expect = 2e-14
Identities = 90/346 (26%), Positives = 140/346 (40%), Gaps = 65/346 (18%)
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
TN+YI+ D+ L L +G +S K + D++ + KG+GFV F+ AQKAV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 121 SLKA---NGVQAQMAKQQEQ----------------------DPTNLYISNLPISMDEQE 155
+ NG Q + + Q++ NLY+ NL +D++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 156 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPS 215
L PFG + S +++ + G S+G GF S E+ + NG+ + T
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT-------- 360
Query: 216 EPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATN 275
+PL A Q+K + Q+ T + MA + N + +P S
Sbjct: 361 KPLYVALA---QRKEERQAHLT-------NQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Query: 276 RMIPQT-SITPFIAASPVSTYQVQSTSW-----MPHPPYVMQPTGAVITPTMDHP--MSM 327
IPQT + + S ++ + S W PHP Q I P P +M
Sbjct: 411 AAIPQTQNRAAYYPPSQIAQLR-PSPRWTAQGARPHP---FQNMPGAIRPAAPRPPFSTM 466
Query: 328 QPANMMGP---LTQQMNHLSLGTTGTYMTAAA----PMQGTYIPQY 366
+PA+ P TQ++ + S T G AAA P T +PQY
Sbjct: 467 RPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT-VPQY 511
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 21/159 (13%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
N++I+ L ++ L +G I+S K + D+N + KGY FV F++ AA KA+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYAFVHFETQEAADKAIE- 156
Query: 122 LKANGV----------QAQMAKQQE-------QDPTNLYISNLPISMDEQELENMLKPFG 164
K NG+ + + K++E ++ TN+YI N +D++ L+ + FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 165 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
+S +++RD NG S+G GF E E ++ NGK
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 75.9 bits (185), Expect = 7e-14
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 27/174 (15%)
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
TN+YI+ D+ L +L +GK +S K + D N + KG+GFV ++ A KAV
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249
Query: 121 SLKANGV----------------QAQMAKQQEQ---------DPTNLYISNLPISMDEQE 155
+ + QA++ ++ EQ NLYI NL ++D+++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 156 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPP 209
L PFG + S +++ + +G S+G GF S E+ + NG+ + + P
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Score = 74.7 bits (182), Expect = 1e-13
Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Query: 52 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 111
N++ +LY+ L T+ L + P G ++S + D T + GY +V+F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 112 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 162
PA A++A+ ++ + ++ + + ++DP+ N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 163 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKF 222
FG+++S +++ D NG S+G F E+ E + I+ NG L + +
Sbjct: 122 FGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 223 ADGGQKKRQNQSKYTQN 239
A+ G K ++ + Y +N
Sbjct: 181 AELGAKAKEFTNVYIKN 197
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 21/159 (13%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
N++I+ L ++ L +G I+S K + D+N + KGY FV F++ AA KA+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYAFVHFETQEAADKAIE- 156
Query: 122 LKANGV----------QAQMAKQQE-------QDPTNLYISNLPISMDEQELENMLKPFG 164
K NG+ + + K++E ++ TN+YI N +D++ L+ + FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 165 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
+S +++RD NG S+G GF E E ++ NGK
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 75.9 bits (185), Expect = 7e-14
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 27/174 (15%)
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
TN+YI+ D+ L +L +GK +S K + D N + KG+GFV ++ A KAV
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249
Query: 121 SLKANGV----------------QAQMAKQQEQ---------DPTNLYISNLPISMDEQE 155
+ + QA++ ++ EQ NLYI NL ++D+++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 156 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPP 209
L PFG + S +++ + +G S+G GF S E+ + NG+ + + P
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Score = 74.7 bits (182), Expect = 1e-13
Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Query: 52 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 111
N++ +LY+ L T+ L + P G ++S + D T + GY +V+F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 112 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 162
PA A++A+ ++ + ++ + + ++DP+ N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 163 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKF 222
FG+++S +++ D NG S+G F E+ E + I+ NG L + +
Sbjct: 122 FGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 223 ADGGQKKRQNQSKYTQN 239
A+ G K ++ + Y +N
Sbjct: 181 AELGAKAKEFTNVYIKN 197
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 21/159 (13%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
N++I+ L ++ L +G I+S K + D+N + KGY FV F++ AA KA+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYAFVHFETQEAADKAIE- 156
Query: 122 LKANGV----------QAQMAKQQE-------QDPTNLYISNLPISMDEQELENMLKPFG 164
K NG+ + + K++E ++ TN+YI N +D++ L+ + FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 165 HVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
+S +++RD NG S+G GF E E ++ NGK
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 78.6 bits (192), Expect = 1e-14
Identities = 96/398 (24%), Positives = 155/398 (38%), Gaps = 64/398 (16%)
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
TN+YI+ D+ L +L +GK +S K + D N + KG+GFV ++ A KAV
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249
Query: 121 SLKANGV----------------QAQMAKQQEQ---------DPTNLYISNLPISMDEQE 155
+ + QA++ ++ EQ NLYI NL ++D+++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 156 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPS 215
L PFG + S +++ + +G S+G GF S E+ + NG+ + S
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV--------GS 360
Query: 216 EPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATN 275
+PL A Q+K + ++ T + AGM P AI N F +
Sbjct: 361 KPLYVALA---QRKEERKAHLTNQ----YMQRVAGMRAL--PANAILNQFQPAAGGYFVP 411
Query: 276 RMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVI-----TPTMDH--PMSMQ 328
+ P+ + ++ + P Q + I PT+ H P
Sbjct: 412 AVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNA 471
Query: 329 PANMMGPLTQQM------NHLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAV---SIEGV 379
PA+ P T Q + L++ G A A QG + PTAV +
Sbjct: 472 PASRGLPTTTQRVGSECPDRLAMDFGG----AGAAQQGLTDSCQSGGVPTAVQNLAPRAA 527
Query: 380 VADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQ 417
VA +P+ VAP +S + A+ PA Q
Sbjct: 528 VAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQ 565
Score = 74.7 bits (182), Expect = 1e-13
Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Query: 52 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 111
N++ +LY+ L T+ L + P G ++S + D T + GY +V+F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 112 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 162
PA A++A+ ++ + ++ + + ++DP+ N++I NL S+D + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 163 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKF 222
FG+++S +++ D NG S+G F E+ E + I+ NG L + +
Sbjct: 122 FGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 223 ADGGQKKRQNQSKYTQN 239
A+ G K ++ + Y +N
Sbjct: 181 AELGAKAKEFTNVYIKN 197
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 79.3 bits (194), Expect = 6e-15
Identities = 96/393 (24%), Positives = 154/393 (39%), Gaps = 67/393 (17%)
Query: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF---DSPAAAQKAV 119
L++ +P ++DL + + +G+I I DK T KG F+ + DS AQ A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 120 ASLKA-----NGVQAQMAKQQEQ-DPTNLYISNLPISMDEQELENMLKPFGHVISTRILR 173
K +Q + A + + + L++ L ++++ M +PFG + +LR
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 128
Query: 174 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK--RQ 231
+G S+G F + ++ + + I L + +P S L+ KFAD +++ R+
Sbjct: 129 GPDGTSKGCAFVKFQTHAEAQAAI-----NTLHSSRTLPGASSSLVVKFADTEKERGLRR 183
Query: 232 NQSKYTQNGRPWPREGEAGMALTYDPT----------------------AAIQ------- 262
Q TQ G P + G Y AA+Q
Sbjct: 184 MQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAI 243
Query: 263 --NGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQ----VQSTSWMPHPPYVMQPTGAV 316
NG ++P + ++ TS P IAA+PVS V S +P P QP
Sbjct: 244 NANGLIATPITPSSG-----TSTPPAIAATPVSAIPAALGVNGYSPVPTQP-TGQPAPDA 297
Query: 317 ITPTMDHPMSMQ-PANMMGPLTQQMNHLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAVS 375
+ P HP Q PA + PL Q + + TAA P + + P PP V+
Sbjct: 298 LYPNGVHPYPAQSPAAPVDPLQQAYAGMQ------HYTAAYPAAYSLVAPAFPQPPALVA 351
Query: 376 IEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSN 408
+ PQ Q QQQ+ D N
Sbjct: 352 QQ---PPPPPQQQQQQQQQQQQQQQREGPDGCN 381
Score = 70.5 bits (171), Expect = 3e-12
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 9 QMYPQYTYYYPHYLQTKQSYAPA-PHPMA-------PPSPSTNSSSNNSSNNSSGEQLSK 60
Q Y +Y Y APA P P A PP E
Sbjct: 320 QAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDG 379
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
N++I LP TD +++++ P+G ++S K +D+ TNQ K +GFV FD+PA+AQ A+
Sbjct: 380 CNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQ 439
Query: 121 SLKANGVQAQMAKQQEQ 137
++ NG Q M + + Q
Sbjct: 440 AM--NGFQIGMKRLKVQ 454
Score = 49.3 bits (116), Expect = 7e-06
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 128 QAQMAKQQEQ----DPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGV 182
Q Q +QQ+Q D N++I +LP + E+ M PFGHVIS ++ D A S+
Sbjct: 364 QQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCF 423
Query: 183 GFARMESTEKCEVVIQHFNG 202
GF ++ + IQ NG
Sbjct: 424 GFVSFDNPASAQAAIQAMNG 443
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 78.2 bits (191), Expect = 1e-14
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 23/162 (14%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
N++++ L ++ L +G I+S + D+N + KGYGFV F++ AA++A+
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS--KGYGFVHFETHEAAERAIK- 156
Query: 122 LKANGV------------------QAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPF 163
K NG+ +A++ + ++ P N+YI N MD++ L+++ F
Sbjct: 157 -KMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP-NVYIKNFGEDMDDERLKDLFGKF 214
Query: 164 GHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
G +S +++ D +G S+G GF E E + + NGK L
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Score = 75.5 bits (184), Expect = 9e-14
Identities = 84/347 (24%), Positives = 134/347 (38%), Gaps = 74/347 (21%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
N+YI+ D+ L L +G +S K + D++ + KG+GFV F+ AQKAV
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 122 LKA---NGVQAQMAKQQEQ----------------------DPTNLYISNLPISMDEQEL 156
+ NG Q + + Q++ NLY+ NL +D++ L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERL 310
Query: 157 ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSE 216
PFG + S +++ + G S+G GF S E+ + NG+ + T +
Sbjct: 311 RKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT--------K 361
Query: 217 PLLCKFADGGQKKRQNQSKYTQ---------NGRPWPREGEAGMALTYDPTAAIQNGFYS 267
PL A Q+K + Q+ T P R +G +T P +Y
Sbjct: 362 PLYVALA---QRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY- 417
Query: 268 SPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHP----PYVMQPTGAVITPTMDH 323
P IA R P+ + + PHP P ++P + +
Sbjct: 418 PPSQIARLRPSPRWT----------------AQGARPHPFQNKPSAIRPGAPRVPFSTMR 461
Query: 324 PMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQGT----YIPQY 366
P S Q +M TQ++ + S T G AAA T +P+Y
Sbjct: 462 PASSQVPRVMS--TQRVANTSTQTVGPRPAAAAAAAATPAVRTVPRY 506
Score = 67.8 bits (164), Expect = 2e-11
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 52 NSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDS 111
N S +LY+ L P T+ L + P G I+S + D T+ Y +V+F
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 112 PAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKP 162
A+ A+ ++ + ++ + + ++DP+ N+++ NL S++ + L + +
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSA 121
Query: 163 FGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
FG+++S ++ D NG S+G GF E+ E E I+ NG L
Sbjct: 122 FGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLL 163
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 77.8 bits (190), Expect = 2e-14
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 22/160 (13%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
N++I+ L ++ L L +G I+S K + D N + KGY +V FDS AAA +A+
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAIWH 164
Query: 122 LKANGVQ------------------AQMAKQQEQDPTNLYISNLPISMDEQELENMLKPF 163
+ NGV+ A++ + TN+++ N+ +D+++L+ + +
Sbjct: 165 M--NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEY 222
Query: 164 GHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
G S +++RDA+G S+G GF R E+ E + + +GK
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Score = 69.3 bits (168), Expect = 6e-12
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 60 KTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAV 119
K LY+ L P T+ L K +P G + T+ D T GYG+V+F PA A+ A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 120 ASLK---ANGVQAQMAKQQEQDPT------NLYISNLPISMDEQELENMLKPFGHVISTR 170
++ NG ++ Q D N++I NL S+D + L + FG+++S +
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 171 ILRDANGVSRGVGFARMESTEKCEVVIQHFNG 202
++ D NG S+G + +S I H NG
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Score = 59.3 bits (142), Expect = 6e-09
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
TN++++ + D+ L +L YG S K I D + + KG+GFV +++ AAQKAV
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVL 257
Query: 121 SLKANGVQAQM------------------------AKQQEQDP-TNLYISNLPISMDEQE 155
L + ++ K++ + P +YI NL ++++++
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 156 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPP 209
L+ FG + +++ + G +G G S E+ + NG+ + + P
Sbjct: 318 LKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 73.9 bits (180), Expect = 2e-13
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
+LY+ L P T+ L + P G I+S + DK T + GY +V++ P A++A+ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 122 LKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRIL 172
L + ++ + + ++DP+ N++I NL ++D + L N+ FG+++S ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 173 RDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
D G +G GF + E E I NG +L
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDVMNGMFL 154
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 73.9 bits (180), Expect = 2e-13
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
+LY+ L P T+ L + P G I+S + DK T + GY +V++ P A++A+ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 122 LKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRIL 172
L + ++ + + ++DP+ N++I NL ++D + L N+ FG+++S ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 173 RDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
D G +G GF + E E I NG +L
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDVMNGMFL 154
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 73.2 bits (178), Expect = 4e-13
Identities = 39/157 (24%), Positives = 79/157 (50%), Gaps = 17/157 (10%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
N++I+ L ++ L + +GKI+S+K + D + KGY FV F + +AA +A+
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEE 156
Query: 122 LKANGVQAQMA---------------KQQEQDPTNLYISNLPISMDEQELENMLKPFGHV 166
+ ++ + + + TN+YI N MD++ L+++ +G
Sbjct: 157 MNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 167 ISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
+S +++ D++G S+G GF +S E + ++ NG+
Sbjct: 217 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGR 253
Score = 72.8 bits (177), Expect = 6e-13
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
TN+YI+ D+ L + YGK +S K + D ++ + KG+GFV FDS AA+KAV
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 121 SLKANGV----------------QAQMAKQQEQ---------DPTNLYISNLPISMDEQE 155
+ + QA++ + EQ LYI NL ++D+++
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 156 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPP 209
L N FG + +++++ G S+G G S E + NG+ L + P
Sbjct: 309 LRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Score = 62.8 bits (151), Expect = 6e-10
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
+LY+ L T+ L + G ++S + D+ T + GY +V+F A AQKA+ +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 122 LKANGVQAQM---------AKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRIL 172
+ + ++ + A + N++I NL S+D + L FG ++S++++
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 173 RDANGVSRGVGFARMESTEKCEVVIQHFNGKYLK 206
D G S+G F ++ + I+ NGK LK
Sbjct: 131 SDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLK 163
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 72.0 bits (175), Expect = 9e-13
Identities = 65/311 (20%), Positives = 123/311 (39%), Gaps = 30/311 (9%)
Query: 23 QTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQ 82
Q +Q P P P+ P + + L L++ +P ++DL L +
Sbjct: 12 QQQQLLQPRPSPVGSSGPEPPGGQPDGMKD-----LDAIKLFVGQIPRHLDEKDLKPLFE 66
Query: 83 PYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTN- 141
+G+I + D T KG F+ + + +A KA +L MA+ + P +
Sbjct: 67 QFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADS 126
Query: 142 ---------LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEK 192
L++ L E+++ + +PFG + +LR +G S+G F + S +
Sbjct: 127 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTE 186
Query: 193 CEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK--RQNQSKYTQNGRPWPREGEAG 250
+ I +G +P S L+ KFAD +++ R+ Q Q G P
Sbjct: 187 AQAAIHALHGSQT-----MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP-----S 236
Query: 251 MALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVM 310
+ L + P +A ++ + + ++P +A SP Q+ + S P +
Sbjct: 237 LTLPFSPYSAYAQALMQQQTTVLST---SGSYLSPGVAFSPCHIQQIGAVSLNGLPATPI 293
Query: 311 QPTGAVITPTM 321
P + +P +
Sbjct: 294 APASGLHSPPL 304
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 13 QYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGT 72
QYT YP + P H + P P NL+I LP
Sbjct: 365 QYTAMYP-----TAAITPIAHSVPQPPPLLQQQQREGPEGC--------NLFIYHLPQEF 411
Query: 73 TDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMA 132
D +L ++ P+G I+S+K +D+ TNQ K +GFV FD+PA+AQ A+ ++ NG Q M
Sbjct: 412 GDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM--NGFQIGMK 469
Query: 133 KQQEQ 137
+ + Q
Sbjct: 470 RLKVQ 474
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 131 MAKQQEQDPT--NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARM 187
+ +QQ + P NL+I +LP + EL M PFG++IS+++ D A S+ GF
Sbjct: 389 LQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSF 448
Query: 188 ESTEKCEVVIQHFNG 202
++ + IQ NG
Sbjct: 449 DNPASAQAAIQAMNG 463
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 68.9 bits (167), Expect = 8e-12
Identities = 76/335 (22%), Positives = 133/335 (39%), Gaps = 38/335 (11%)
Query: 39 SPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNT 98
S T + N + ++S +++ +P ++++L +L +PYG + + D++
Sbjct: 18 SNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 77
Query: 99 N--QCKGYGFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYIS 145
N Q KG FV F + AA Q A+ ++K + +Q + A ++ + L+I
Sbjct: 78 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIG 137
Query: 146 NLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
+ +E ++ M PFG + RILR +G+SRG F + + I K +
Sbjct: 138 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAM 192
Query: 206 KTPPGIPAPSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MA 252
+ S P++ KFAD + K Q Q N W G +A
Sbjct: 193 HQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLA 252
Query: 253 LTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQP 312
L T++ G +S +A + ++ AA+ + ST+ P
Sbjct: 253 LLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLST-TSSA 311
Query: 313 TGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGT 347
GA+ +P + M LT SLGT
Sbjct: 312 LGALTSPVAASTPNSTAGAAMNSLT------SLGT 340
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 26 QSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQ 82
Q+Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 385 QAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFM 444
Query: 83 PYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 137
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 445 PFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 497
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 128 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 184
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 409 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 468
Query: 185 ARMESTEKCEVVIQHFNG 202
++ + IQ NG
Sbjct: 469 VSYDNPVSAQAAIQAMNG 486
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 68.2 bits (165), Expect = 1e-11
Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 38/332 (11%)
Query: 42 TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-- 99
T + N + ++S +++ +P ++++L +L +PYG + + D++ N
Sbjct: 28 TANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPP 87
Query: 100 QCKGYGFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLP 148
Q KG FV F + AA Q A+ ++K + +Q + A ++ + L+I +
Sbjct: 88 QSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVS 147
Query: 149 ISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 208
+E ++ M PFG + RILR +G+SRG F + + I K +
Sbjct: 148 KKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQS 202
Query: 209 PGIPAPSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTY 255
+ S P++ KFAD + K Q Q N W G +AL
Sbjct: 203 QTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQ 262
Query: 256 DPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGA 315
T++ G +S +A + ++ AA+ + ST+ P GA
Sbjct: 263 QATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLST-TSSALGA 321
Query: 316 VITPTMDHPMSMQPANMMGPLTQQMNHLSLGT 347
+ +P + M LT SLGT
Sbjct: 322 LTSPVAASTPNSTAGAAMNSLT------SLGT 347
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 26 QSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQ 82
Q+Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 398 QAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFM 457
Query: 83 PYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 137
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 458 PFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 510
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 128 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 184
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
Query: 185 ARMESTEKCEVVIQHFNG 202
++ + IQ NG
Sbjct: 482 VSYDNPVSAQAAIQAMNG 499
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 67.8 bits (164), Expect = 2e-11
Identities = 87/384 (22%), Positives = 140/384 (36%), Gaps = 58/384 (15%)
Query: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
L+I +P ++DL L + +GKI + D+ T KG F+ + +A KA ++L
Sbjct: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
Query: 123 KANGVQAQMAKQQEQDPTN---------LYISNLPISMDEQELENMLKPFGHVISTRILR 173
M + + P + L++ L E ++ + + FG++ ILR
Sbjct: 116 HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILR 175
Query: 174 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK--RQ 231
+G S+G F + S + + I +G +P S L+ KFAD +++ R+
Sbjct: 176 GPDGNSKGCAFVKYSSHAEAQAAINALHGSQT-----MPGASSSLVVKFADTDKERTMRR 230
Query: 232 NQSKYTQNGR------PWPREGEAGMALT---------------YDPTAAI--------- 261
Q Q G P+ G AL +P AA
Sbjct: 231 MQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMA 290
Query: 262 ---QNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVIT 318
NG ++P + + P P + + P S V + +P P QP +
Sbjct: 291 ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SPIGVNGFTGLP-PQANGQPAAEAVF 348
Query: 319 PTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAV---S 375
HP Q PL Q G AA P I Q P PP +
Sbjct: 349 ANGIHPYPAQSPTAADPLQQAY----AGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQ 404
Query: 376 IEGVVADTSPQTVAPSSQDTSGQQ 399
EG V+ +P + + Q +G Q
Sbjct: 405 REGFVSFDNPASAQTAIQAMNGFQ 428
Score = 36.6 bits (83), Expect = 0.044
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 135 QEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA-NGVSRGVGF---ARMEST 190
++ D L+I +P ++DE++L+ + + FG + +L+D G+ +G F ES
Sbjct: 49 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESA 108
Query: 191 EKCEVVIQHFNGKYLKTPPGIPAP 214
K + + KT PG+ P
Sbjct: 109 LKAQSALHE-----QKTLPGMNRP 127
Score = 30.0 bits (66), Expect = 4.1
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 105 GFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 137
GFV FD+PA+AQ A+ ++ NG Q M + + Q
Sbjct: 407 GFVSFDNPASAQTAIQAM--NGFQIGMKRLKVQ 437
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,327,300
Number of Sequences: 37866
Number of extensions: 949503
Number of successful extensions: 5336
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 4221
Number of HSP's gapped (non-prelim): 990
length of query: 420
length of database: 18,247,518
effective HSP length: 105
effective length of query: 315
effective length of database: 14,271,588
effective search space: 4495550220
effective search space used: 4495550220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.