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Search of human proteins with 50409756
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
(360 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 706 0.0
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 682 0.0
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 657 0.0
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 620 e-178
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 75 9e-14
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 75 1e-13
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 69 5e-12
gi|239509017 PREDICTED: hypothetical protein, partial [Homo sapi... 68 1e-11
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 67 3e-11
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 67 3e-11
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 66 4e-11
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 65 7e-11
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 65 9e-11
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 65 9e-11
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 65 9e-11
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 65 9e-11
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 65 1e-10
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 65 1e-10
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 65 1e-10
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 65 1e-10
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 65 1e-10
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 65 1e-10
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 64 2e-10
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 62 6e-10
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 62 6e-10
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 62 8e-10
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 62 8e-10
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 62 8e-10
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 62 8e-10
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 62 1e-09
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 706 bits (1823), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS 180
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS 180
Query: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 240
PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK
Sbjct: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 240
Query: 241 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 300
RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW
Sbjct: 241 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 300
Query: 301 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 360
DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP
Sbjct: 301 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 360
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 682 bits (1760), Expect = 0.0
Identities = 352/360 (97%), Positives = 352/360 (97%), Gaps = 8/360 (2%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS 180
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAE
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAE---- 176
Query: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 240
ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK
Sbjct: 177 ----ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 232
Query: 241 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 300
RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW
Sbjct: 233 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 292
Query: 301 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 360
DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP
Sbjct: 293 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 352
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 657 bits (1694), Expect = 0.0
Identities = 341/360 (94%), Positives = 341/360 (94%), Gaps = 19/360 (5%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS 180
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ--------------- 165
Query: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 240
ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK
Sbjct: 166 ----ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 221
Query: 241 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 300
RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW
Sbjct: 222 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 281
Query: 301 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 360
DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP
Sbjct: 282 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 341
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 620 bits (1600), Expect = e-178
Identities = 323/342 (94%), Positives = 323/342 (94%), Gaps = 19/342 (5%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS 180
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ--------------- 165
Query: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 240
ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK
Sbjct: 166 ----ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 221
Query: 241 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 300
RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW
Sbjct: 222 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 281
Query: 301 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 342
DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINK
Sbjct: 282 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 323
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 75.1 bits (183), Expect = 9e-14
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 18/130 (13%)
Query: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITE 185
H S+ ++++RSRSRGR + K+ K SR+ S+S+S S++ G+ +S
Sbjct: 549 HPESKSKTKTRSRSRGRA----RNKTSKSRSRSSSSSSSSSSSTSSSSGSSSS------- 597
Query: 186 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK---RGKYKDKRRKKKKKRK 242
+RSSSSSSSS+S SSS SSSS+SSSS+ R + RG +D++ ++ RK
Sbjct: 598 ----SGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRK 653
Query: 243 KLKKKGKEKA 252
+ G E++
Sbjct: 654 RRDTSGLERS 663
Score = 58.2 bits (139), Expect = 1e-08
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 62 SAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRAR 121
S GRAR+ T R++ S ++ S ++ ++ +SS + S G +R
Sbjct: 560 SRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSR 619
Query: 122 GAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSP 181
+ + S SRSRSR RG +++ ++S D R ++ + K+S +
Sbjct: 620 DSSSSTSSSSESRSRSRGRGHNRDRKHRRS-VDRKRRDTSGLERSHKSSKGGSSRD---- 674
Query: 182 CITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 235
T+ SK K R R S S SS S SS S R ++ KDKRR
Sbjct: 675 --TKGSKDKNSRSDRKRSISESSRSGKRSSRSE---------RDRKSDRKDKRR 717
Score = 46.6 bits (109), Expect = 3e-05
Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 186 RSKQKARRRTRSSSS--SSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
RS+ +AR +T S S SSSSSSSSSS+SSSS SSSSS R +
Sbjct: 561 RSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRD 620
Query: 244 LKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEE--DGPVLTDEQKSRIQAMKPMTKEEWD 301
+E++ G + D+ HR + + + D L KS TK D
Sbjct: 621 SSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKD 680
Query: 302 ARQSIIRKVVDPETGRT 318
RK E+ R+
Sbjct: 681 KNSRSDRKRSISESSRS 697
Score = 36.6 bits (83), Expect = 0.036
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 179 PSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 228
P + SK K + R+RS + + +S S S SSSSSSSSSS G
Sbjct: 544 PVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSG 593
Score = 35.8 bits (81), Expect = 0.061
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 176 EASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 221
E P +T + K++ +TRS S + + +S S S SSSSSSSS
Sbjct: 539 EVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSS 584
Score = 30.4 bits (67), Expect = 2.6
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 222 DGRKKRGKYKDKRRK--KKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGP 279
+ R +R K+K + + +++K +++GK +++E D AGEEE+
Sbjct: 282 EARPRRQSMKEKEHQVVRNEEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKE 341
Query: 280 VL--------TDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPE 314
+ E++ + Q M+ +EE + R+S ++ PE
Sbjct: 342 IAIVHSDAEKEQEEEEQKQEMEVKMEEETEVRESEKQQDSQPE 384
Score = 28.9 bits (63), Expect = 7.5
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 32/172 (18%)
Query: 104 PLEKARGGLSGPQGGRAR------------------------GAMAHVGSRKRSRSRSRS 139
P++ LSGP GGR R GA++ +G +R+R SR
Sbjct: 39 PIQARLLALSGPGGGRGRGSLLLRRGFSDSGGGPPAKQRDLEGAVSRLGGERRTRRESRQ 98
Query: 140 RGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSS 199
S+ +K ++ +TS+ R + + E+ KQ+ RR
Sbjct: 99 E---SDPEDDDVKKPALQSSVVATSKERTR-----RDLIQDQNMDEKGKQRNRRIFGLLM 150
Query: 200 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 251
+ S+ ++ +K + +++R++ + +R++L ++ + K
Sbjct: 151 GTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQVENERRELFEERRAK 202
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 74.7 bits (182), Expect = 1e-13
Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 28/235 (11%)
Query: 115 PQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGR------- 167
P R R + + SR+RS S+SRSR R R+++S S STS+ R
Sbjct: 261 PSSSRHRRSRSR--SRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDK 318
Query: 168 --KASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRK 225
K S P S + S+++ RRR+RS + S S S S S K
Sbjct: 319 EKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEK 378
Query: 226 KRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQ 285
K+ K K++ R ++++ KKK K+K + ++ ++ + Q R EEE G D +
Sbjct: 379 KKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQG---YDSE 435
Query: 286 KSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEI-VTKERHRE 339
K + + KP+ + P+T + KG G+ L E V + H E
Sbjct: 436 KEKKEEKKPI-------------ETGSPKTKECSVEKGTGDSLRESKVNGDDHHE 477
Score = 35.4 bits (80), Expect = 0.080
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
Query: 155 TSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSS 214
+S+ + + R+A + A P E ++ +R R+RS + SSS S S
Sbjct: 215 SSKEIEEAMKRVREAQSLISAAIEPDK--KEEKRRHSRSRSRSRRRRTPSSSRHRRSRSR 272
Query: 215 SSSSSSSDGRKKRGKYKDKRRKK------KKKRKKLKKKGKEKAEAQQVEALPGP---SL 265
S S S R +R +RR+ ++ R K + K+K + ++ + P S
Sbjct: 273 SRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYST 332
Query: 266 DQWHRSAGEE 275
+ RSA E
Sbjct: 333 ARRSRSASRE 342
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 69.3 bits (168), Expect = 5e-12
Identities = 68/267 (25%), Positives = 102/267 (38%), Gaps = 9/267 (3%)
Query: 81 GAALPSRPAS--RAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
G P R AS R + +SS +R R G G RSRSRS
Sbjct: 363 GGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSW 422
Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSK----QKARRR 194
SR R +R +SR R+ + G + S +P P RS+ + RR
Sbjct: 423 SRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRG 482
Query: 195 TRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKR-RKKKKKRKKLKKKGKEKAE 253
R SSS S SS S S S S S + R R R + + + +EK
Sbjct: 483 GRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLT 542
Query: 254 AQQVEALPGPSLDQWHRSAGEEEDG--PVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVV 311
G L + +AG+E P LT ++K +++ K + ++ +++ K++
Sbjct: 543 RPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMI 602
Query: 312 DPETGRTRLIKGDGEVLEEIVTKERHR 338
E R + +I KER R
Sbjct: 603 QQEHERQEREDELRAMARKIRMKERER 629
Score = 49.7 bits (117), Expect = 4e-06
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 129 SRKRSRSRSRSRGRGSEKR----KKKSRKDTSRNCSASTSQGRKASTA-PGAEASPSPCI 183
S SRSRSRS G E++ D +A+ + +T P A P
Sbjct: 307 SSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPA 366
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
R+ RR + SSSSSS+S +SSS SSS SSS S R+ G Y+ R + + R
Sbjct: 367 PGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRS----RRGGGYYRSGRHARSRSRSW 422
Query: 244 LKKKGKEK 251
+ + + +
Sbjct: 423 SRSRSRSR 430
>gi|239509017 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 90
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 177 ASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 236
++PS C T ++K RR+RSSSSSSSSSSSSSSS R++R + + +RR+
Sbjct: 9 SAPSTCFTLTPEKKEERRSRSSSSSSSSSSSSSSSRRRRRRRRRRRRRRRRRRRRRRRRE 68
Query: 237 KKKKRKKLKKKGKEKAEAQQ 256
+KKK+KK K++ +E+AE ++
Sbjct: 69 EKKKQKKKKRREEEEAEEEE 88
Score = 29.3 bits (64), Expect = 5.7
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 81 GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
G A+ S P++ PE + S +R R+R R R R R
Sbjct: 4 GEAVTSAPSTCFTLTPEKKEERRSRSSSSSSSSSSSSSSSRRRRRRRRRRRRRRRRRRRR 63
Query: 141 GRGSEKRKKKSRK 153
R E++KK+ +K
Sbjct: 64 RRRREEKKKQKKK 76
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 66.6 bits (161), Expect = 3e-11
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 47/240 (19%)
Query: 90 SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKK 149
SR+ R + S ++R G S ++R + + GSR RS+SRSRS+ R S +K+
Sbjct: 188 SRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSR-SRSRSGSRSRSKSRSRSQSR-SRSKKE 245
Query: 150 KSR---KDTSRNCSASTSQGRKASTAPGAE--------ASPSPCITERSKQKARRRTRS- 197
KSR K+ SR+ S S + R S E P R K K++ R+RS
Sbjct: 246 KSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQ 305
Query: 198 ------------SSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 245
S S S S S S S S + R K KDKR+ +K+ R++ +
Sbjct: 306 ERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESR 365
Query: 246 KKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQS 305
+ + ++++++ R G + D S+ + K KE+ D QS
Sbjct: 366 SRSRSRSKSER------------SRKRGSKRD---------SKAGSSKKKKKEDTDRSQS 404
Score = 66.2 bits (160), Expect = 4e-11
Identities = 80/337 (23%), Positives = 138/337 (40%), Gaps = 34/337 (10%)
Query: 8 GEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGR 67
G E R+ RL+ PG+ R+ + + + + + G + S R
Sbjct: 162 GTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSR 221
Query: 68 ARDGTWGVRTKGSGAALPSRPASRAAPRPEAS-SPPLPLEKARGGLSGPQGGRARGAMA- 125
+R G+ R+K SR SR+ + E S SP ++R +G +++
Sbjct: 222 SRSGSRS-RSKSR-----SRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEE 275
Query: 126 ------HVGSRK-----RSRSRSRSRGRGSEKRKKKSRKDT---SRNCSASTSQGRKAST 171
+VG K R +S+S+SR R E+R ++ ++ + R+ S Q R S
Sbjct: 276 KIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSR 335
Query: 172 APGAEASPSPCITE-RSKQKARRRTRSSSSSSSSSSSSSSSS---SSSSSSSSSDGRKKR 227
+ G S S ++ + K+K R+R+R S S S S S S S S S + +KK+
Sbjct: 336 SKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKK 395
Query: 228 GKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEAL-----PGPSLDQWHRSAGEEEDGPVLT 282
+ D+ + + R K++ K+E+ Q E G + + RS + P L
Sbjct: 396 KEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLP 455
Query: 283 DEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 319
E +SR ++ +S R P R+R
Sbjct: 456 SESRSRSKSASKTRSRSKSRSRSASR---SPSRSRSR 489
Score = 62.0 bits (149), Expect = 8e-10
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 6/204 (2%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNC-SASTSQGRKASTAPGAEASPSPCITERS 187
S RSRS SRSR R RK +SR +S++ S S S+ R S + S S +
Sbjct: 184 SYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSK 243
Query: 188 KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK 247
K+K+R ++ S S S S+ S S S + GK K + + K + K + +
Sbjct: 244 KEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSR 303
Query: 248 GKEK--AEAQQVEALPGPSLD---QWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDA 302
+E+ E ++ G S + + RS + G +S+ + + K +
Sbjct: 304 SQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREE 363
Query: 303 RQSIIRKVVDPETGRTRLIKGDGE 326
+S R E R R K D +
Sbjct: 364 SRSRSRSRSKSERSRKRGSKRDSK 387
Score = 55.8 bits (133), Expect = 6e-08
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Query: 62 SAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRAR 121
S GG R+R + SR SR+ R + S + RG + G ++
Sbjct: 336 SKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSER---SRKRGSKRDSKAGSSK 392
Query: 122 GAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCS--ASTSQGRKASTAPGAEASP 179
R +SRS SRS + E K +S + R S A T+Q ++ + +++ P
Sbjct: 393 KKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKP 452
Query: 180 SPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 221
+ RS+ K+ +TRS S S S S+S S S S S S S S
Sbjct: 453 NLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRSHSRS 494
Score = 55.1 bits (131), Expect = 1e-07
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 8/164 (4%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQG 166
+++GG R++ G RKRSR SRSR R K ++ ++ + R+ A +S+
Sbjct: 335 RSKGGSRSRSRSRSKSKDKRKG-RKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKK 393
Query: 167 RKASTAPGAEA-SPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRK 225
+K +++ SPS + SK++ ++ SS S ++ ++ + S S S+ +
Sbjct: 394 KKKEDTDRSQSRSPSRSV---SKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKS 450
Query: 226 KRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 269
K + R + K K + + K+ ++ P S + H
Sbjct: 451 KPNLPSESRSRSKSAS---KTRSRSKSRSRSASRSPSRSRSRSH 491
Score = 54.3 bits (129), Expect = 2e-07
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS-RSRSRG--- 141
SR S+ R + S +K +G + R+R SR RS+S RSR RG
Sbjct: 332 SRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSR-------SRSRSKSERSRKRGSKR 384
Query: 142 ---RGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSS 198
GS K+KKK D S++ S S S ++ A +E+S E + TRS
Sbjct: 385 DSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAK-SESSQREGRGESENAGTNQETRSR 443
Query: 199 SSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKA 252
S S+S S + S S S S S+S K R + K + R + + + + ++
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSAS---KTRSRSKSRSRSASRSPSRSRSRSHSRS 494
Score = 43.9 bits (102), Expect = 2e-04
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 10/183 (5%)
Query: 166 GRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSS-SSSSSSSSDGR 224
GRK S RS+ +R R+RS S S S S SS SS S S S S G
Sbjct: 167 GRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGS 226
Query: 225 KKRGKYKDK-RRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTD 283
+ R K + + + + + K++K + KEK+ ++ A G S + A E+
Sbjct: 227 RSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSA--GKSRSKSKDQAEEKIQNNDNVG 284
Query: 284 EQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQ 343
+ KSR + + Q R+V + + G G E+ + + R R +K
Sbjct: 285 KPKSRSPSRHKSKSKSRSRSQE--RRVEEEKRGSV----SRGRSQEKSLRQSRSRSRSKG 338
Query: 344 ATR 346
+R
Sbjct: 339 GSR 341
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 66.6 bits (161), Expect = 3e-11
Identities = 73/257 (28%), Positives = 103/257 (40%), Gaps = 48/257 (18%)
Query: 49 RGCGARGPAPLLASAGGGRARDGTWGVRT------KGSGAALPSRPAS----------RA 92
R G+R P+P S G R+G G R+ GS + P +P+S A
Sbjct: 293 RSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAA 352
Query: 93 APRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKR-KKKS 151
AP P A P ++ G +GGRA G R+R R RSRS +R +++
Sbjct: 353 APTPPARGKESPSPRSAPSSQG-RGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRP 411
Query: 152 RKDTSRNCSASTSQGRKASTAPGAEASPSPCIT-----------ERSKQKARRRTRSSSS 200
R R S S S+ R +S + +P P +R+K++ R +S+S
Sbjct: 412 RPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTS 471
Query: 201 SS------------SSSSSS------SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRK 242
S SSS S S SSS S S S S +KR + R KK
Sbjct: 472 PSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKR-PHSPSRSPSPKKPL 530
Query: 243 KLKKKGKEKAEAQQVEA 259
K G+ +A + EA
Sbjct: 531 SRDKDGEGRARHSEAEA 547
Score = 52.0 bits (123), Expect = 8e-07
Identities = 74/251 (29%), Positives = 97/251 (38%), Gaps = 45/251 (17%)
Query: 14 REGRLLPR-APGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGT 72
R GR PR AP R+ L +S+D+G G GA GP P S G G
Sbjct: 405 RRGRRRPRPAPPRGSSRS------LSRARSSSDSG-SGRGAPGPGPEPGSERG----HGG 453
Query: 73 WGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
G R K RP RP ++SP RGG G R+ G H S
Sbjct: 454 HGKRAK-------ERPPRA---RPASTSPSPGAHGRRGGPEGKSSSRSPGP--HPRSWSS 501
Query: 133 SRSRSRSRGRGSEKR---------------KKKSRKDTSRNCSASTSQGRKASTAPGA-- 175
SRS S+SR R +EKR + K + +R+ A ++ R+ S +
Sbjct: 502 SRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIR 561
Query: 176 -EASPSPCITE-RSKQKARRRTRSSSSSSSSSSSS--SSSSSSSSSSSSSDGRKKRGKYK 231
SP E R AR+R S SSSSS SS S+ S S S G Y
Sbjct: 562 KRRRDSPSFMEPRRITSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSRSPSPGHSHGSYS 621
Query: 232 DKRRKKKKKRK 242
+ + + +
Sbjct: 622 SRSHGTRSRTR 632
Score = 43.5 bits (101), Expect = 3e-04
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 37/172 (21%)
Query: 98 ASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR-SRGRGSE-KRKKKSRKDT 155
AS PP +K +GG H SRK+ R S S G S ++KKKS K
Sbjct: 164 ASPPPKKKKKKKGG--------------HRRSRKKRRLESECSCGSSSPLRKKKKSVKKH 209
Query: 156 SRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSS 215
R+ S S S+ ++ + ++ E++K+K R T S S SS SS S S
Sbjct: 210 RRDRSDSGSRRKRRHRSRSSKCKRK----EKNKEKKRPHTESPGRRSHRHSSGSSHSPSL 265
Query: 216 SSSSSSDGRKKRGKYKDKR---RKKKKKRKKLKKKGKEKAEAQQVEALPGPS 264
SS Y D R R K R + +K G +++ + P PS
Sbjct: 266 SSH-----------YSDSRSPSRLSPKHRDEGRKTGSQRSSGSR---SPSPS 303
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERS 187
GS++ S SRS S GS + + + A + A + P +SPSP
Sbjct: 290 GSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSP------ 343
Query: 188 KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
+ R + +++ + + S S S+ SS GR G + +RR+++++R +
Sbjct: 344 --RVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSR 397
Score = 39.3 bits (90), Expect = 0.006
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 158 NCSASTSQGRKA-STAPGAEASPSPCITERSKQKA-RRRTRSSSSSSSSSSSSSSSSSSS 215
+C AS +G + T + +S SP ++ K+K RR+R S S SSS
Sbjct: 142 DCPASCYRGHRGYRTKHWSSSSASPPPKKKKKKKGGHRRSRKKRRLESECSCGSSSPLRK 201
Query: 216 SSSSSSDGRKKRGKYKDKRRKKKKKRK-KLKKKGKEKAEAQQVEALPGPSLDQWHRSAGE 274
S R+ R +R+++ + R K K+K K K + + PG + HR +
Sbjct: 202 KKKSVKKHRRDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPG---RRSHRHSSG 258
Query: 275 EEDGPVLT 282
P L+
Sbjct: 259 SSHSPSLS 266
Score = 39.3 bits (90), Expect = 0.006
Identities = 47/175 (26%), Positives = 67/175 (38%), Gaps = 15/175 (8%)
Query: 71 GTWGVRTK---GSGAALPSRPASRAAPRPEASSPPLPLE-KARGGLSGPQGGRARGAMAH 126
G G RTK S A+ P + + S LE + G S P + + H
Sbjct: 150 GHRGYRTKHWSSSSASPPPKKKKKKKGGHRRSRKKRRLESECSCGSSSPLRKKKKSVKKH 209
Query: 127 ------VGSRKRSRSRSRS-RGRGSEKRKKKSRKDTS----RNCSASTSQGRKASTAPGA 175
GSR++ R RSRS + + EK K+K R T R+ S+ S +
Sbjct: 210 RRDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHY 269
Query: 176 EASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKY 230
S SP + R+T S SS S S S S S S + ++ G +
Sbjct: 270 SDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAH 324
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 66.2 bits (160), Expect = 4e-11
Identities = 68/225 (30%), Positives = 98/225 (43%), Gaps = 11/225 (4%)
Query: 2 ERA-GPAGEEGGAREGRLLPRA---PGAWVLRACAERAALEVGAASADTGVRGCGARGPA 57
ERA P+ G A LLP A P + V A ++++ + + G + + A
Sbjct: 2422 ERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVA 2481
Query: 58 PLLASAGGGRARDGTWGVRTKG-SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQ 116
+SAG +G V G + + PAS A +P A + P ++ R S
Sbjct: 2482 TTTSSAGD---HNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSS 2538
Query: 117 GGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAE 176
+ + + S S S S S SE + + + S + K + G
Sbjct: 2539 SSSSSSSSS---SSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRP 2595
Query: 177 ASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 221
P+P +R + + SSSSSSSSSSSSSSSSSSSSSSSSS
Sbjct: 2596 PEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2640
Score = 63.2 bits (152), Expect = 4e-10
Identities = 79/305 (25%), Positives = 112/305 (36%), Gaps = 26/305 (8%)
Query: 20 PRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKG 79
P+ PG W +R A + R RG + A GR+R T R
Sbjct: 537 PQRPG-WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 595
Query: 80 SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARG-AMAHVGSRKRSRS--- 135
S R SR R S P + R P R+R + A R RSR+
Sbjct: 596 SRTPTRRRSRSRTPARRGRSRSRTPARR-RSRTRSPVRRRSRSRSPARRSGRSRSRTPAR 654
Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSASTSQ-----GRKASTAPGAEASPSPCITERSKQK 190
R RSR R +R + + +R S S+ GR S P S S + R +
Sbjct: 655 RGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSH 714
Query: 191 ARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKR-------RKKKKKRKK 243
+R R S SSS + S +S S S+S K+ + +R R K K R
Sbjct: 715 SRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLS 774
Query: 244 LKK--KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAM-KPMTKEEW 300
L++ G Q+ + P S RS + T ++SR + P K +
Sbjct: 775 LRRSLSGSSPCPKQKSQTPPRRS-----RSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKT 829
Query: 301 DARQS 305
+RQS
Sbjct: 830 PSRQS 834
Score = 56.2 bits (134), Expect = 4e-08
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 10/205 (4%)
Query: 54 RGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLS 113
R +P A G R+R T + S + P SR+A R S P ++R
Sbjct: 483 RSRSPATAKRGRSRSRTPT---KRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSP-Q 538
Query: 114 GPQGGRARGAMAHVGSRKRSRSRSRSRG---RGSEKRKKKSRKDTSRNCSASTSQGRKAS 170
P R+R SR R RS SR RG + + +R+ SR+ + + + R +
Sbjct: 539 RPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT 598
Query: 171 TAPGAEASPSPCITERSKQK--ARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 228
S +P RS+ + ARRR+R+ S S S S + S S S + R+ R
Sbjct: 599 PTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRS 658
Query: 229 KYK-DKRRKKKKKRKKLKKKGKEKA 252
+ + RR + + R ++ G+ ++
Sbjct: 659 RSRTPARRGRSRSRTPARRSGRSRS 683
Score = 55.8 bits (133), Expect = 6e-08
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 24/213 (11%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSG------PQGGRA 120
R+R G+ AA ++ S ++P P+A +P ++R G S P+G +
Sbjct: 1595 RSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSS 1654
Query: 121 ---------RGAMAHVGSRK----RSRSRSRSRGRGSEKRKKKSRKD--TSRNCSASTSQ 165
+ A GSR +++SR+ R R S + +RK + R+ SAS+S
Sbjct: 1655 TESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSP 1714
Query: 166 GRKASTAPGAEASP---SPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 222
++ T P SP SP E+S+ RRR+ SS + ++S S S S
Sbjct: 1715 ETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSR 1774
Query: 223 GRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 255
R +R K + RR+ + + + ++++ ++
Sbjct: 1775 SRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSR 1807
Score = 53.9 bits (128), Expect = 2e-07
Identities = 80/318 (25%), Positives = 116/318 (36%), Gaps = 44/318 (13%)
Query: 13 AREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGT 72
AR GR R P R R+ + + S R +R P A GR+R T
Sbjct: 610 ARRGRSRSRTPAR---RRSRTRSPVRRRSRSRSPARRSGRSRSRTP----ARRGRSRSRT 662
Query: 73 WGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
R + S + P+R + R+ R P + R P+ GR+R R
Sbjct: 663 PARRGR-SRSRTPARRSGRSRSRT-------PARRGRSRSRTPRRGRSRSRSLVRRGRSH 714
Query: 133 SRS-RSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKAS---------TAPGAEASP--- 179
SR+ + R R S +RK KSR R+ S S+ + +K+ ++P ++A
Sbjct: 715 SRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLS 774
Query: 180 --------SPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYK 231
SPC KQK++ R S S SS + S + S SSSS K++ K
Sbjct: 775 LRRSLSGSSPC----PKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTP 830
Query: 232 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPG-PSLDQWHRSAGEEEDGPVLTDEQKSRIQ 290
++ K G + S+ RS E P L SR
Sbjct: 831 SRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHS 890
Query: 291 ---AMKPMTKEEWDARQS 305
+ P K RQS
Sbjct: 891 CSGSSPPRVKSSTPPRQS 908
Score = 52.4 bits (124), Expect = 6e-07
Identities = 61/265 (23%), Positives = 100/265 (37%), Gaps = 50/265 (18%)
Query: 77 TKGSGAALPSRPASRAAPRP----EASSPPLPLEKARGGLSGPQG-----GRARGAMAHV 127
TK S A S + + AP P E SS P ++ G + R G
Sbjct: 428 TKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSP 487
Query: 128 GSRKRSRSRSR-------SRGRGSEKRKKKSRKDTSRNCSA------------------- 161
+ KR RSRSR SR R + R+ +S + R+ S
Sbjct: 488 ATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRN 547
Query: 162 STSQGRKASTAPGAEASPSPCITERSKQKA-RRRTRSSSSSSSSSSSSSSSSSSSSSSSS 220
+ +GR S G S SP RS+ + RR RS S + + S S + + S S
Sbjct: 548 TQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSR 607
Query: 221 SDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPV 280
+ R+ R + + R++ + R ++++ + ++ A+ RS P
Sbjct: 608 TPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR--------------RSGRSRSRTPA 653
Query: 281 LTDEQKSRIQAMKPMTKEEWDARQS 305
+SR A + ++ AR+S
Sbjct: 654 RRGRSRSRTPARRGRSRSRTPARRS 678
Score = 52.0 bits (123), Expect = 8e-07
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQ-------GGRARGAMAHVGSRKRSRSRSR 138
+R SR++P P+ S P + R S P+ R+R A + +R R+ R R
Sbjct: 1668 ARRGSRSSPEPKTKSRTPP--RRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHR 1725
Query: 139 -SRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARR-RTR 196
S S + +KSR +SR +++S K ++ G SP P +RS+ ++RR +TR
Sbjct: 1726 RSPSVSSPEPAEKSR--SSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTR 1783
Query: 197 SSSSSSSSSSSSSSSSSSSSSSSSSD-GRKKRG----KYKDKRRKKKKKRKKLKKKGKEK 251
++ S SS S+S S S S R++RG + R++ + +++G+ +
Sbjct: 1784 TTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSR 1843
Score = 52.0 bits (123), Expect = 8e-07
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 16/196 (8%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
+S+ + + + G++LP +P A + S P P E R G P+ A
Sbjct: 2545 SSSSSSSSSSSSGSSSSDSEGSSLPVQP--EVALKRVPSPTPAPKEAVREGRP-PEPTPA 2601
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS 180
+ S S S S S S S +S + S+S+S + PG +A P
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPK 2661
Query: 181 PCIT------ERSKQKARRRTRSSSSSSSSSSS-------SSSSSSSSSSSSSSDGRKKR 227
P ER + R+ S S S S S S S SSSS+ +R
Sbjct: 2662 PASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRR 2721
Query: 228 GKYKDKRRKKKKKRKK 243
G+ D R K+R++
Sbjct: 2722 GQRGDSRSPSHKRRRE 2737
Score = 50.8 bits (120), Expect = 2e-06
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 176 EASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 235
E+S S T + K+K +++ R S SSS SS +K R + + K+R
Sbjct: 176 ESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKK--------KKHRSESESKKR 227
Query: 236 KKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPM 295
K + K K+K K+K + P P + HRS + T +SR A K
Sbjct: 228 KHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTH 287
Query: 296 T 296
T
Sbjct: 288 T 288
Score = 48.9 bits (115), Expect = 7e-06
Identities = 60/247 (24%), Positives = 90/247 (36%), Gaps = 23/247 (9%)
Query: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGG-----LSGPQGGRA--RGAMAHVG 128
R+ S SR R P SSP P EK+R S P+ RG
Sbjct: 1708 RSASSSPETRSRTPPRHRRSPSVSSPE-PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPK 1766
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSR----KDTSRNCSASTSQGRKASTAPGAEA--SPSPC 182
R RSRSRSR + +++ R + TSR S S+ R G S SP
Sbjct: 1767 PRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPA 1826
Query: 183 ITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRK 242
E S+ +RRR S + +S S S +S + ++ R + ++ + R
Sbjct: 1827 RQESSRTSSRRR------RGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRT 1880
Query: 243 KLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDA 302
L + + ++ V S R PV +SR P+T+ +
Sbjct: 1881 PLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSR---TPPVTRRRSRS 1937
Query: 303 RQSIIRK 309
R R+
Sbjct: 1938 RTPTTRR 1944
Score = 47.0 bits (110), Expect = 3e-05
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 21/172 (12%)
Query: 67 RARDGTWGVRTKGSGAALPS---RPASRAAP----RPEASSPPLPLEKARGGLSGPQGGR 119
R+R T V + S + P+ R SR P R + +PP+ ++R S R
Sbjct: 1922 RSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRR 1981
Query: 120 ARGAMAHVGSRKRSRSRS------RSRGRGSEKRKKKSRKDT-------SRNCSASTSQG 166
+R + V +R+RSRSR+ RSR R S +++SR T SR+ + +
Sbjct: 1982 SRSRTSPV-TRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRK 2040
Query: 167 RKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 218
R S +P A S T R+ + R TRS + S+S SSS S S++
Sbjct: 2041 RSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSAT 2092
Score = 45.8 bits (107), Expect = 6e-05
Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 34/218 (15%)
Query: 86 SRPASRAAPRP----------EASSPPLPLEKA------RGGLSGPQGGRARGAMAHVGS 129
+R A + AP P +S P P +K RG S R +
Sbjct: 157 AREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKK 216
Query: 130 RKRSRSRSRSRGRGS----EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITE 185
+ RS S S+ R S KRK K +K + + R+A + A+++ S +
Sbjct: 217 KHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSR 276
Query: 186 RSKQKARRRTRSSSSSSSSSSSSS--------------SSSSSSSSSSSSDGRKKRGKYK 231
+ A +T +++ + S S +S ++S+ SS + ++ Y+
Sbjct: 277 SRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYE 336
Query: 232 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 269
DK + KK+K E++ P P L + H
Sbjct: 337 DKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERH 374
Score = 45.4 bits (106), Expect = 8e-05
Identities = 67/277 (24%), Positives = 100/277 (36%), Gaps = 49/277 (17%)
Query: 83 ALPS--RPASRAAPRPEASSPPLPLEKARGGLSG----------PQGGRARGAMAH---- 126
ALP RP SR+ PE ++ L ++ R G P G R+R +
Sbjct: 1488 ALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDV 1547
Query: 127 ---VGSRKRSRS--------------RSRSRGRGSEKRKKKSRKDTSRNCSASTSQGR-K 168
++RS S R RSR S + KSR R+ S S+ + + K
Sbjct: 1548 KPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDK 1607
Query: 169 ASTAP----GAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 224
AP G+++SP P R R S S SSS S SSS+ SS +
Sbjct: 1608 PRAAPRAQSGSDSSPEP-----KAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHP 1662
Query: 225 KKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDE 284
K + R + + K + + ++ E L + RSA + T
Sbjct: 1663 PKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPP 1722
Query: 285 QKSR---IQAMKPMTKEEWDARQSIIRKVVDPETGRT 318
+ R + + +P K R+ R P T T
Sbjct: 1723 RHRRSPSVSSPEPAEKSRSSRRR---RSASSPRTKTT 1756
Score = 43.1 bits (100), Expect = 4e-04
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
+A+ T R++ S + P + + + + +SS P P K + G + P+ G A+
Sbjct: 805 KAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHP--KVKSG-TPPRQGSITSPQAN 861
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITER 186
S R RS S + KSR + +CS S+ K+ST P S S +
Sbjct: 862 EQSVTPQR---RSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPK 918
Query: 187 SKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSS 220
K R RS S SSS S S +S ++ S S
Sbjct: 919 VKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRS 952
Score = 42.4 bits (98), Expect = 7e-04
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 29/234 (12%)
Query: 47 GVRGCGARGPAPLLASAGGGRARDG------TWGVRTKGSGAALP-SRPASRAAP----R 95
G G +R PA +S R R G T R++ + P R SRA+P R
Sbjct: 1816 GGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRR 1875
Query: 96 PEASSPPLPLEKARGGLSGPQGGRARG----------AMAHVGSRKRSRSRSRSRGRGSE 145
+ +P + ++R S R+R + A SR+RSRSR+ R
Sbjct: 1876 SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 1935
Query: 146 KRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSS----- 200
+ + + + SR+ + ++ R S P S R+ RRR+RS +S
Sbjct: 1936 RSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRS---RSRTSPITRRRSRSRTSPVTRR 1992
Query: 201 SSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 254
S S +S + S S +S R+ R + R++ + R L + + ++ +
Sbjct: 1993 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRS 2046
Score = 41.6 bits (96), Expect = 0.001
Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 15/186 (8%)
Query: 49 RGCGARGPAPLLASAGGGR-ARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEK 107
R C P P L S R + G+ R K S S P+ ++P+P+ + P ++
Sbjct: 870 RSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQS-PSRSSSPQPKVKAIISPRQR 928
Query: 108 ARGGLSGPQGGRARGAMAHVGSRK-------RSRSRSRSRGRGSEKRKKKSRKDT----S 156
+ G S P R SR SR R GS K + +T S
Sbjct: 929 SHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQS 988
Query: 157 RNCSASTSQGRKASTAPGAE--ASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSS 214
+ S S KA T PG S SPC E+SK + S S + SS+ S
Sbjct: 989 HSGSISPYPKVKAQTPPGPSLSGSKSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPPGES 1048
Query: 215 SSSSSS 220
SS
Sbjct: 1049 YFGVSS 1054
Score = 41.6 bits (96), Expect = 0.001
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 23/220 (10%)
Query: 53 ARGPAPLLASAGGGRARDGTWGV---RTKGSGAALPSRPASRAAP----RPEASSPPLPL 105
+R PL++ R+R T V R++ + R SRA+P R + +PP+
Sbjct: 1876 SRSRTPLISRR---RSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTR 1932
Query: 106 EKARGGLSGPQGGRARGAMAHVGSRKRSRSRS------RSRGRGSEKRKKKSRKDTSRNC 159
++R P R + +R+RSRSR+ RSR R S +++SR TS
Sbjct: 1933 RRSRSRT--PTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVT 1990
Query: 160 SASTSQGRKASTAPGAEASPSPCITERSKQKA----RRRTRSSSS-SSSSSSSSSSSSSS 214
+ T + + SP RS+ + RRR+RS + S S S +
Sbjct: 1991 RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAI 2050
Query: 215 SSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 254
S S R RGK R +R+ +++ +
Sbjct: 2051 RRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRS 2090
Score = 41.2 bits (95), Expect = 0.001
Identities = 70/286 (24%), Positives = 106/286 (37%), Gaps = 41/286 (14%)
Query: 32 AERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASR 91
A R+ A+S+DT R A +A GR+ G R G G A S P +
Sbjct: 260 AHRSTSADSASSSDTS-RSRSRSAAAKTHTTALAGRSPSPASGRR--GEGDAPFSEPGTT 316
Query: 92 AAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR-SRSRSRSRGRGSEKRKKK 150
+ RP SSP E A S P + + +R S RS +
Sbjct: 317 STQRP--SSP----ETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLL 370
Query: 151 SRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSS------ 204
+ + +T+ + P +EASP+ +RS K+ + SSSS SS
Sbjct: 371 AERHGGSPQPLATTPLSQEPVNPPSEASPT---RDRSPPKSPEKLPQSSSSESSPPSPQP 427
Query: 205 ------SSSSSSS-------------SSSSSSSSSSDGRKKRGK---YKDKRRKKKKKRK 242
+SSS S SSS +S + S GR KR K + RR + +
Sbjct: 428 TKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSP 487
Query: 243 KLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSR 288
K+G+ ++ QW RS + G + +++ R
Sbjct: 488 ATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGR 533
Score = 41.2 bits (95), Expect = 0.001
Identities = 64/281 (22%), Positives = 99/281 (35%), Gaps = 35/281 (12%)
Query: 49 RGCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRP---EASSPPLPL 105
R P P S R R + RTK + SR +P+P + S
Sbjct: 1726 RSPSVSSPEPAEKSRSSRRRRSAS-SPRTKTT-----SRRGRSPSPKPRGLQRSRSRSRR 1779
Query: 106 EKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRG-----------SEKRKKKSRKD 154
EK R + G ++ R RSRSR R RG E + SR+
Sbjct: 1780 EKTRTTRRRDRSGSSQSTSRR-RQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRR 1838
Query: 155 TSRNCSASTSQGRKASTAPGAEASPSPCITERSK------QKARRRTRSSSSSSSSSSSS 208
R+ + TS+ R S SP+P RS+ +++R RT S S S +S
Sbjct: 1839 RGRSRTPPTSRKRSRS-----RTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTS 1893
Query: 209 SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQW 268
S S S +S R+ R + R++ + R + + ++
Sbjct: 1894 PVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPV 1953
Query: 269 HRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRK 309
R PV +SR P+T+ +R S + +
Sbjct: 1954 TRRRSRSRTPPVTRRRSRSR---TSPITRRRSRSRTSPVTR 1991
Score = 38.5 bits (88), Expect = 0.009
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 67 RARDGTWGVRTKGSGAALPS----RPASRAAP----RPEASSPPLPLEKARGGLSGPQGG 118
R+R T V + S + P R SR +P R + + P+ ++R S
Sbjct: 1945 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRR 2004
Query: 119 RARGAMAHVGSRKRSRSR--------SRSRGRGSEKRKKKSR-----KDTSRNCSASTSQ 165
R+R + V +R+RSRSR SRSR +++ +SR + SR+ + T++
Sbjct: 2005 RSRSRTSPV-TRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTAR 2063
Query: 166 GRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 218
G+++ T RS RRR+ S SSS S S++ ++ + S S
Sbjct: 2064 GKRSLT--------------RSPPAIRRRSASGSSSDRSRSATPPATRNHSGS 2102
Score = 36.2 bits (82), Expect = 0.047
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 189 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 248
Q+ R + + S SSSS S + +KK+ K + +R + R++ KK
Sbjct: 154 QRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSS 213
Query: 249 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 308
K+K + E S + HRS + D+++ R ++ P K R +
Sbjct: 214 KKKKHRSESE-----SKKRKHRSPTPKSKRK-SKDKKRKRSRSTTPAPKSRRAHRSTSAD 267
Query: 309 KVVDPETGRTR 319
+T R+R
Sbjct: 268 SASSSDTSRSR 278
Score = 34.3 bits (77), Expect = 0.18
Identities = 48/190 (25%), Positives = 71/190 (37%), Gaps = 38/190 (20%)
Query: 79 GSGAALPSRPASRAAPRPEASSPPLPLEKAR-------GGLSGPQGG---RARGAMAHVG 128
GS + PSR SR PR S P ++R G S P +H G
Sbjct: 932 GSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSG 991
Query: 129 S-------RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTS--QGRKASTAPG----- 174
S + ++ G S ++KS+ ++C S S G K+ST PG
Sbjct: 992 SISPYPKVKAQTPPGPSLSGSKSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPPGESYFG 1051
Query: 175 ---------AEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSS-----SSS 220
++ SP S + + + S S S S +S S SSS +S
Sbjct: 1052 VSSLQLKGQSQTSPDHRSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASR 1111
Query: 221 SDGRKKRGKY 230
S R+ RG++
Sbjct: 1112 SPIRQDRGEF 1121
Score = 34.3 bits (77), Expect = 0.18
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 23/132 (17%)
Query: 77 TKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSR 136
+ S + P++P +A P+P + P P E+ R+R + S + SRS
Sbjct: 2643 SSSSSSPSPAKPGPQALPKPASPKKPPPGER-----------RSRSPRKPIDSLRDSRSL 2691
Query: 137 SRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTR 196
S S +R++ S + + R+ +S+S+ G SPS K RR T
Sbjct: 2692 SYS----PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPS--------HKRRRETP 2739
Query: 197 SSSSSSSSSSSS 208
S SS S
Sbjct: 2740 SPRPMRHRSSRS 2751
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 65.5 bits (158), Expect = 7e-11
Identities = 61/208 (29%), Positives = 86/208 (41%), Gaps = 43/208 (20%)
Query: 56 PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGP 115
PAP A+A G R + R + A + +S P P A + P +K R
Sbjct: 503 PAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRS----- 557
Query: 116 QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGA 175
R R +H S R RSRSRSR R + +R S ST + R S
Sbjct: 558 ---RDRKPGSHASSSARRRSRSRSRSRSTRRR------------SRSTDRRRGGSRR--- 599
Query: 176 EASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 235
RS++K RRR RS+S ++SSSS SS + + RGK++D
Sbjct: 600 ---------SRSREKRRRRRRSASPPPATSSSS---------SSRRE--RHRGKHRDGGG 639
Query: 236 KKKKKRKKLKKKGKEKAEAQQVEALPGP 263
KKKK++ + K + + P P
Sbjct: 640 SKKKKKRSRSRGEKRSGDGSEKAPAPAP 667
Score = 55.1 bits (131), Expect = 1e-07
Identities = 54/234 (23%), Positives = 91/234 (38%), Gaps = 29/234 (12%)
Query: 65 GGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASS--------PPLPLEKARGGLSGPQ 116
GGRA T + LP PA RA + S L ++ + P
Sbjct: 413 GGRAARPTPAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDLGEPAPAPPA 472
Query: 117 GGRARGAM---AHVGSRKRSRSRSRS---------RGRGSEKRKKKSRKDTSRNCSASTS 164
G + + +++R R R RS +KKSR++ R+ A +
Sbjct: 473 ADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEA 532
Query: 165 QGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 224
+ T P A SP +++ + + R+ +SSS+ S S S S S+ S S R
Sbjct: 533 ASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDR 592
Query: 225 KKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDG 278
++ G + + R+K+++R++ A A S + R G+ DG
Sbjct: 593 RRGGSRRSRSREKRRRRRR---------SASPPPATSSSSSSRRERHRGKHRDG 637
Score = 44.3 bits (103), Expect = 2e-04
Identities = 48/211 (22%), Positives = 75/211 (35%), Gaps = 41/211 (19%)
Query: 81 GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
G + SR + R ++SPP A S + R RG G K+ + RSRSR
Sbjct: 595 GGSRRSRSREKRRRRRRSASPP----PATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSR 650
Query: 141 GR-----GSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAE------------------- 176
G GSEK + + R+ + P +
Sbjct: 651 GEKRSGDGSEKAPAPAPPPSGSTSCGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRL 710
Query: 177 -----ASPSPCITERSKQKARRRTRSSSSSSSSSSSSS-----SSSSSSSSSSSSDGRKK 226
PSP K++ + S SS S ++SSSSSS G ++
Sbjct: 711 DKSDPRGPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRR 770
Query: 227 R---GKYKDKRRKKKKKRKKLKKKGKEKAEA 254
+ G +D+ R + + R + KK + E+
Sbjct: 771 KALDGGDRDRDRDRDRDRDRSSKKARPPKES 801
Score = 43.9 bits (102), Expect = 2e-04
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 22/197 (11%)
Query: 88 PASRAAPRPEASSPPLPLE-KARGGLSGPQGGRARGAMA------HVGSRKRS-----RS 135
PA ++P+ E L + RGG S + R GA + GSR+++ R
Sbjct: 720 PAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKALDGGDRD 779
Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSK--QKARR 193
R R R R ++ KK+R S+ S+ G+ +S S C + + K K
Sbjct: 780 RDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAV 839
Query: 194 RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKY--KDKRRKKKKKR------KKLK 245
R SS++ + ++S+ S S R+ R + D+R + + K K
Sbjct: 840 LIREGVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKK 899
Query: 246 KKGKEKAEAQQVEALPG 262
K K KA A++ + G
Sbjct: 900 TKVKAKAGAKKTKGTKG 916
Score = 43.5 bits (101), Expect = 3e-04
Identities = 73/295 (24%), Positives = 112/295 (37%), Gaps = 38/295 (12%)
Query: 21 RAPGAWVLRACA---ERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRT 77
RA GA R E A G S + G GA P PLL G +G
Sbjct: 343 RADGAMRRRVFVVGTEAEACREGKVSVEVVTAG-GAALPPPLLPP-GDSEIEEGEIVQPE 400
Query: 78 KGSGAALPS-RPASRAA-PRPEASSPPL-------PLEKARGG---LSGPQGGRARGAM- 124
+ AL RP RAA P P AS+ P P +A G LS GA+
Sbjct: 401 EEPRLALSLFRPGGRAARPTPAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQ 460
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKK--KSRKDTSRNCSASTSQGRKASTAPGAEASPSPC 182
+G + + SR G + R+K R++ R S S + + AP A A P
Sbjct: 461 VDLGEPAPAPPAADSRWGGLDLRRKILTQRRERYRQRSPSPAP----APAPAAAAGPPT- 515
Query: 183 ITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKD---------K 233
K+ R R RS + ++SSSS + + + +S D +K R + + +
Sbjct: 516 ----RKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSAR 571
Query: 234 RRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSR 288
RR + + R + ++ + ++ + S ++ R P + SR
Sbjct: 572 RRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSR 626
Score = 39.3 bits (90), Expect = 0.006
Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 11/236 (4%)
Query: 50 GCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSR--PASRAAPRPEASSPPLPLEK 107
G + PA ASAG G R S P P A P ++ P K
Sbjct: 844 GVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKKTKVK 903
Query: 108 ARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCS-ASTSQG 166
A+ G +G +G +RK+ RS S G G + KKS+ D +CS A+ ++G
Sbjct: 904 AKAGAKKTKG--TKGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKAD---SCSQAAGTKG 958
Query: 167 RKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 226
+ ++ G E + T K + S + SS + S ++ + +
Sbjct: 959 AEETSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVR 1018
Query: 227 RGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPS-LDQWHRSAGEE--EDGP 279
G +++ +++++ ++ +++ + A PS +AG+ EDGP
Sbjct: 1019 GGAEEEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGP 1074
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 65.1 bits (157), Expect = 9e-11
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEASPSPCI 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ ++ +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
+ S A R+ SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ T
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD---KTR 63
Query: 165 QGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 224
+ R AS+ + S S S + T + SSS SSSSS+SS S SSS+S SS
Sbjct: 64 KRRSASSGSSSTRSRSS-----STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
Query: 225 KKRGK-YKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 269
G +RR ++R + K K ++ E ++ P P + H
Sbjct: 119 SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
Score = 30.0 bits (66), Expect = 3.4
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
R RD T R+ SG+ S SR++ + S G + A +
Sbjct: 57 RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSP 181
GS SRS S S GS + R+ +R S S S+ K SPSP
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSR--RRHDNRRRSRSKSKPPKRDEKERKRRSPSP 158
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 65.1 bits (157), Expect = 9e-11
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEASPSPCI 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ ++ +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
+ S A R+ SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ T
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD---KTR 63
Query: 165 QGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 224
+ R AS+ + S S S + T + SSS SSSSS+SS S SSS+S SS
Sbjct: 64 KRRSASSGSSSTRSRSS-----STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
Query: 225 KKRGK-YKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 269
G +RR ++R + K K ++ E ++ P P + H
Sbjct: 119 SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
Score = 30.0 bits (66), Expect = 3.4
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
R RD T R+ SG+ S SR++ + S G + A +
Sbjct: 57 RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSP 181
GS SRS S S GS + R+ +R S S S+ K SPSP
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSR--RRHDNRRRSRSKSKPPKRDEKERKRRSPSP 158
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 65.1 bits (157), Expect = 9e-11
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEASPSPCI 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ ++ +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
+ S A R+ SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ T
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD---KTR 63
Query: 165 QGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 224
+ R AS+ + S S S + T + SSS SSSSS+SS S SSS+S SS
Sbjct: 64 KRRSASSGSSSTRSRSS-----STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
Query: 225 KKRGK-YKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 269
G +RR ++R + K K ++ E ++ P P + H
Sbjct: 119 SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
Score = 30.0 bits (66), Expect = 3.4
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
R RD T R+ SG+ S SR++ + S G + A +
Sbjct: 57 RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSP 181
GS SRS S S GS + R+ +R S S S+ K SPSP
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSR--RRHDNRRRSRSKSKPPKRDEKERKRRSPSP 158
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 65.1 bits (157), Expect = 9e-11
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEASPSPCI 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ ++ +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
+ S A R+ SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ T
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD---KTR 63
Query: 165 QGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 224
+ R AS+ + S S S + T + SSS SSSSS+SS S SSS+S SS
Sbjct: 64 KRRSASSGSSSTRSRSS-----STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
Query: 225 KKRGK-YKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 269
G +RR ++R + K K ++ E ++ P P + H
Sbjct: 119 SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
Score = 30.0 bits (66), Expect = 3.4
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
R RD T R+ SG+ S SR++ + S G + A +
Sbjct: 57 RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSP 181
GS SRS S S GS + R+ +R S S S+ K SPSP
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSR--RRHDNRRRSRSKSKPPKRDEKERKRRSPSP 158
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEASPSPCI 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ ++ +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
+ S A R+ SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 58.9 bits (141), Expect = 7e-09
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSK 188
S R+ S ++ + R EK K +S+ + S+ +GR + + +S S RS
Sbjct: 21 SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
Query: 189 QKARR--RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YKDKRRKKKKKRKKLK 245
+ T + SSS SSSSS+SS S SSS+S SS G +RR ++R + K
Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
Query: 246 KKGKEKAEAQQVEALPGPSLDQWH 269
K ++ E ++ P P + H
Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKVH 164
Score = 52.8 bits (125), Expect = 5e-07
Identities = 34/117 (29%), Positives = 54/117 (46%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERS 187
G+ K S + R R + ++ S ++R+ S+STS +++ + S S + RS
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 244
+ R+ SSSSSS S S S + S S KR + + KRR K K+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKV 163
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEASPSPCI 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ ++ +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
+ S A R+ SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 58.9 bits (141), Expect = 7e-09
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSK 188
S R+ S ++ + R EK K +S+ + S+ +GR + + +S S RS
Sbjct: 21 SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
Query: 189 QKARR--RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YKDKRRKKKKKRKKLK 245
+ T + SSS SSSSS+SS S SSS+S SS G +RR ++R + K
Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
Query: 246 KKGKEKAEAQQVEALPGPSLDQWH 269
K ++ E ++ P P + H
Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKVH 164
Score = 52.8 bits (125), Expect = 5e-07
Identities = 34/117 (29%), Positives = 54/117 (46%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERS 187
G+ K S + R R + ++ S ++R+ S+STS +++ + S S + RS
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 244
+ R+ SSSSSS S S S + S S KR + + KRR K K+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKV 163
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEASPSPCI 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ ++ +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
+ S A R+ SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 58.9 bits (141), Expect = 7e-09
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSK 188
S R+ S ++ + R EK K +S+ + S+ +GR + + +S S RS
Sbjct: 21 SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
Query: 189 QKARR--RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YKDKRRKKKKKRKKLK 245
+ T + SSS SSSSS+SS S SSS+S SS G +RR ++R + K
Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
Query: 246 KKGKEKAEAQQVEALPGPSLDQWH 269
K ++ E ++ P P + H
Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKVH 164
Score = 52.8 bits (125), Expect = 5e-07
Identities = 34/117 (29%), Positives = 54/117 (46%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERS 187
G+ K S + R R + ++ S ++R+ S+STS +++ + S S + RS
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 244
+ R+ SSSSSS S S S + S S KR + + KRR K K+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKV 163
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEASPSPCI 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ ++ +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
+ S A R+ SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 58.9 bits (141), Expect = 7e-09
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSK 188
S R+ S ++ + R EK K +S+ + S+ +GR + + +S S RS
Sbjct: 21 SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
Query: 189 QKARR--RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YKDKRRKKKKKRKKLK 245
+ T + SSS SSSSS+SS S SSS+S SS G +RR ++R + K
Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
Query: 246 KKGKEKAEAQQVEALPGPSLDQWH 269
K ++ E ++ P P + H
Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKVH 164
Score = 52.8 bits (125), Expect = 5e-07
Identities = 34/117 (29%), Positives = 54/117 (46%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERS 187
G+ K S + R R + ++ S ++R+ S+STS +++ + S S + RS
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 244
+ R+ SSSSSS S S S + S S KR + + KRR K K+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKV 163
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 64.7 bits (156), Expect = 1e-10
Identities = 70/229 (30%), Positives = 96/229 (41%), Gaps = 17/229 (7%)
Query: 2 ERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLA 61
E +G G E LL + V +++A E D G G + P LL+
Sbjct: 2444 EESGAKGPRRPGEEAELLVKLDHEGVTSPKSKKAK-EALLLREDPGAGGW--QEPKSLLS 2500
Query: 62 -----SAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQ 116
A G W T G A P + E S P +KA+ G +
Sbjct: 2501 LGSYPPAAGSSEPKAPWPKATDGDLAQEPGPGLTF-----EDSGNPKSPDKAQAEQDGAE 2555
Query: 117 GGRARGAMAHVGSRKRSRSRSR-SRGRGSEKRKKKSRKDTS---RNCSASTSQGRKASTA 172
+ + + S S S S S G E+ K RNCSA++S+ +++
Sbjct: 2556 ESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASS 2615
Query: 173 PGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 221
+ +S S + S + + SSSSSSSSSSSSSSSSSSSSSSSSS
Sbjct: 2616 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2664
Score = 59.7 bits (143), Expect = 4e-09
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 13 AREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGT 72
A+E LL PGA + ++ L +G+ G + AP + G A++
Sbjct: 2477 AKEALLLREDPGAGGWQE--PKSLLSLGSYPPAAG----SSEPKAPWPKATDGDLAQEPG 2530
Query: 73 WGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
G+ + SG P P A + A + G S + G+ G +
Sbjct: 2531 PGLTFEDSGN--PKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETE-GEEEG 2587
Query: 133 SRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKAR 192
++ G G S + S S+S+S +S++ + +S S + S +
Sbjct: 2588 DKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSS---SSSSSSSSS 2644
Query: 193 RRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 222
+ SSSSSSSSSSSSSSSSSSSSSSS++D
Sbjct: 2645 SSSSSSSSSSSSSSSSSSSSSSSSSSSTTD 2674
Score = 51.2 bits (121), Expect = 1e-06
Identities = 49/215 (22%), Positives = 81/215 (37%), Gaps = 10/215 (4%)
Query: 94 PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRK 153
P +S P P KA G + G G +S ++++ G+E+ + S
Sbjct: 2506 PAAGSSEPKAPWPKATDGDLAQEPGP--GLTFEDSGNPKSPDKAQAEQDGAEESESSSSS 2563
Query: 154 DTSRNCSASTSQGRKASTA---PGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSS 210
+ + S+S+S + T G + C T R + +SS ++S +SSSSS
Sbjct: 2564 SSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTG-----GRNCSAASSRAASPASSSSS 2618
Query: 211 SSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHR 270
SSSSSSSSSSS + + + + D+
Sbjct: 2619 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSS 2678
Query: 271 SAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQS 305
+ ++E P T ++ TK+ AR S
Sbjct: 2679 CSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPS 2713
Score = 37.4 bits (85), Expect = 0.021
Identities = 61/283 (21%), Positives = 103/283 (36%), Gaps = 42/283 (14%)
Query: 61 ASAGGGR--ARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGG 118
AS GG R AR+ + SG L +R A+ A P P P L + + +
Sbjct: 1842 ASGGGYRLGARERALSPGLEESGLGLLARFAASALPSPTVG-PSLSVVQLEAKQKARKKE 1900
Query: 119 RARGAMAHVGSRKRSRS--RSRSRGRGSEKRKKKSRKDTSRNCSAST------------- 163
+ + S S + R R R KK + + +A T
Sbjct: 1901 ERQSLLGTEFEYTDSESEVKVRKRSPAGLLRPKKGLGEPGPSLAAPTPGARGPDPSSPDK 1960
Query: 164 -----SQGRKASTA---------PGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSS 209
+GRKA G EAS T R ++ S+++ + S++ +
Sbjct: 1961 AKLAVEKGRKARKLRGPKEPGFEAGPEASDDDLWTRRRSERIFLHDASAAAPAPVSTAPA 2020
Query: 210 SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 269
+ +S + RK G+ KD++ +K KKKGKE + P+L
Sbjct: 2021 TKTSRCAKGGPLSPRKDAGRAKDRKDPRK------KKKGKEAGPGAGLPPPRAPALP--- 2071
Query: 270 RSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVD 312
S LT ++S+ +A K+E + + K+++
Sbjct: 2072 -SEARAPHASSLTAAKRSKAKAKGKEVKKENRGKGGAVSKLME 2113
Score = 35.0 bits (79), Expect = 0.10
Identities = 46/258 (17%), Positives = 89/258 (34%), Gaps = 17/258 (6%)
Query: 20 PRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKG 79
P++P +A AE+ E +S+ + + + S G G G
Sbjct: 2541 PKSPD----KAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCG 2596
Query: 80 SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRS 139
+G S +SRAA +SS + S + + + S S S S S
Sbjct: 2597 TGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2656
Query: 140 RGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSS 199
S S T+ S+ +S A ++ + T+ +KQ + R + S
Sbjct: 2657 SSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHS 2716
Query: 200 SSSSSSSSSSSS---------SSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKE 250
+ + + + + + S +K+ G + ++ K+++ + +
Sbjct: 2717 PGKKTPAPQPQAPPPQPTQPLQPKAQAGAKSRPKKREGVHLPTTKELAKRQRLPSVENRP 2776
Query: 251 KAEAQQVEALPGPSLDQW 268
K A LP L +W
Sbjct: 2777 KIAA----FLPARQLWKW 2790
Score = 33.9 bits (76), Expect = 0.23
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 37 LEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKGS---------GAALPSR 87
+++ + + D R A P L A G R D G+R K S A P+
Sbjct: 388 IQIASQARDARAREREAGRPGVLQAPPGSPRPLDRPEGLREKNSVIRSLKRPPPADAPTV 447
Query: 88 PASRAAPRPEASSP----------PLPLEKARGGLSGPQGGRA 120
A+RA+P P A P P P E+A G +GP +A
Sbjct: 448 RATRASPDPRAYVPAKELLKPEADPRPCERAPRGPAGPAAQQA 490
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 64.7 bits (156), Expect = 1e-10
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 176 EASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 235
E P + + K++ + + SSSSSS S SSS S SSS SS S S +K K K K R
Sbjct: 176 ELIPKSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHR 235
Query: 236 -------KKKKKRKKLKKKGKEKAEAQQVEALP 261
K+KKKRKK KK ++EA+ +EA P
Sbjct: 236 KNSRKHKKEKKKRKKSKKSASSESEAENLEAQP 268
Score = 47.8 bits (112), Expect = 2e-05
Identities = 36/131 (27%), Positives = 49/131 (37%), Gaps = 22/131 (16%)
Query: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCS-----------ASTSQGRKASTAPGAEASPS 180
R+R RSRSR R R + +D SR+ S+ R+ T PG
Sbjct: 561 RTRERSRSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPG------ 614
Query: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 240
RS+ K RRR R S SS S S + + S +K +KR K +
Sbjct: 615 -----RSRSKDRRRRRRDSRSSEREESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSR 669
Query: 241 RKKLKKKGKEK 251
+EK
Sbjct: 670 DHNSSNNSREK 680
Score = 46.2 bits (108), Expect = 5e-05
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 20/156 (12%)
Query: 130 RKRSRSRSRSR----GRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITE 185
R+R RSRSR R GR K +++ R+D SR+ SQ R E S S E
Sbjct: 599 RRRGRSRSRERRTPPGRSRSKDRRRRRRD-SRSSEREESQSRNKDKYRNQE-SKSSHRKE 656
Query: 186 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSS-----SSSSSDGRKKRGKYKDKRRKKKK- 239
S+ + R ++S +SS++S + S SS D K K+K +K +
Sbjct: 657 NSESEKRMYSKSRDHNSSNNSREKKADRDQSPFSKIKQSSQDNELKSSMLKNKEDEKIRS 716
Query: 240 --KRKKLKKKGKEKAEAQQV------EALPGPSLDQ 267
+++ K KG+E + E+ PG D+
Sbjct: 717 SVEKENQKSKGQENDHVHEKNKKFDHESSPGTDEDK 752
Score = 45.4 bits (106), Expect = 8e-05
Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 13/202 (6%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQG 166
K+R + R + + KR RS RS+GR E K+K ++ S+ S+
Sbjct: 459 KSRSKSKEKSKSKERDSKHNRNEEKRMRS--RSKGRDHENVKEKEKQSDSKGKDQERSRS 516
Query: 167 RKASTAPGAEASPSPCITERSKQKARR-RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRK 225
++ S E+ + +SK+K RR ++RS + S +S + S S R+
Sbjct: 517 KEKSKQ--LESKSNEHDHSKSKEKDRRAQSRSRECDITKGKHSYNSRTRERSRSRDRSRR 574
Query: 226 KRGKYKDKRRKKKK-----KRKKLKKKGKEKAEAQQVEALPGPSLDQWHR---SAGEEED 277
R + D+ R + K + ++ +++G+ ++ ++ S D+ R S E +
Sbjct: 575 VRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRRDSRSSERE 634
Query: 278 GPVLTDEQKSRIQAMKPMTKEE 299
++ K R Q K ++E
Sbjct: 635 ESQSRNKDKYRNQESKSSHRKE 656
Score = 43.9 bits (102), Expect = 2e-04
Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 15/225 (6%)
Query: 98 ASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRK-KKSRKDTS 156
+SS + + S + A +++ + R SR EK+K KKS+K S
Sbjct: 197 SSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKSKKSAS 256
Query: 157 RNCSASTSQGRKASTAPGAEASPSP---CITERSKQKARRRTRSSSSSSSSSSSSSSSSS 213
A + + ST E P P + +S KA + R + + +S
Sbjct: 257 SESEAENLEAQPQSTVRPEEIPPIPENRFLMRKSPPKADEKERKNRERERERECNPPNSQ 316
Query: 214 SSSSSS----SSDGRKKRGKYKDKRRKKKKKRKKLKKKGKE-----KAEAQQVEALPGPS 264
+S + GRK +G+ + R + R + + + E + E Q+ + + S
Sbjct: 317 PASYQRRLLVTRSGRKIKGRGPRRYRTPSRSRSRDRFRRSETPPHWRQEMQRAQRMRVSS 376
Query: 265 LDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRK 309
++W + G++ + + + Q+S ++ + + + +S RK
Sbjct: 377 GERWIK--GDKSELNEIKENQRSPVRVKERKITDHRNVSESPNRK 419
Score = 42.7 bits (99), Expect = 5e-04
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 130 RKRSRSRSRSRGRGSEK----RKKKSRKDTSRNCSAST-SQGRKASTAPGAEASPSPC-I 183
R SRSRSR R R SE R++ R R S +G K+ E SP +
Sbjct: 342 RTPSRSRSRDRFRRSETPPHWRQEMQRAQRMRVSSGERWIKGDKSELNEIKENQRSPVRV 401
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
ER R + S + + S+S +K KYK+K KK+ + K
Sbjct: 402 KERKITDHRNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNK--VKKRAKSK 459
Query: 244 LKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQK 286
+ K KEK+++++ ++ + ++ RS + D + +++K
Sbjct: 460 SRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEK 502
Score = 42.0 bits (97), Expect = 9e-04
Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 20/224 (8%)
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGR---------KASTAPGAEA 177
V R +S+SRS+S+ + K + S S+GR K S + G +
Sbjct: 452 VKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQ 511
Query: 178 SPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKK 237
S RSK+K+ ++ S S+ S S + S S D K + Y + R++
Sbjct: 512 ERS-----RSKEKS-KQLESKSNEHDHSKSKEKDRRAQSRSRECDITKGKHSYNSRTRER 565
Query: 238 KKKRKKLKK-----KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAM 292
+ R + ++ ++++ +++ + RS E P K R +
Sbjct: 566 SRSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRR 625
Query: 293 KPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKER 336
+ E + QS + + ++ K + E + + +K R
Sbjct: 626 RDSRSSEREESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSR 669
Score = 38.5 bits (88), Expect = 0.009
Identities = 43/216 (19%), Positives = 83/216 (38%), Gaps = 27/216 (12%)
Query: 145 EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITE-RSKQKARRRTRSSSSSSS 203
+K +KK K +S + S+S+ + + +++S S TE +SK++ ++ ++S
Sbjct: 184 KKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKK 243
Query: 204 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDK-------------RRKKKKKRKKLKKKGKE 250
S S+SS S ++ + + + + RK K + ++K +E
Sbjct: 244 EKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPPIPENRFLMRKSPPKADEKERKNRE 303
Query: 251 KAEAQQVEALPGPSLDQWHRSAGEEEDGPVL----------TDEQKSRIQAMKPMTKEEW 300
+ ++ P + R G + +SR + + T W
Sbjct: 304 RERERECNP-PNSQPASYQRRLLVTRSGRKIKGRGPRRYRTPSRSRSRDRFRRSETPPHW 362
Query: 301 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKER 336
RQ + R + R IKGD L EI +R
Sbjct: 363 --RQEMQRAQRMRVSSGERWIKGDKSELNEIKENQR 396
Score = 37.7 bits (86), Expect = 0.016
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 6/177 (3%)
Query: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
R++ + SR R R + E R G S + R + R+R R
Sbjct: 567 RSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRR 626
Query: 136 RSRSRGRGSEKRKKKSR-KDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRR 194
SRS SE+ + +SR KD RN + +S ++ S + S S + + ++
Sbjct: 627 DSRS----SEREESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSRDHNSSNNSREKKA 682
Query: 195 TRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKY-KDKRRKKKKKRKKLKKKGKE 250
R S S SS + SS + + K R K+ ++ K ++ + +K K+
Sbjct: 683 DRDQSPFSKIKQSSQDNELKSSMLKNKEDEKIRSSVEKENQKSKGQENDHVHEKNKK 739
Score = 34.7 bits (78), Expect = 0.14
Identities = 22/128 (17%), Positives = 47/128 (36%)
Query: 149 KKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSS 208
K++++ R + R S +P + + + R R +S +
Sbjct: 392 KENQRSPVRVKERKITDHRNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNK 451
Query: 209 SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQW 268
+ S S S S + K + K + ++KR + + KG++ ++ E
Sbjct: 452 VKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQ 511
Query: 269 HRSAGEEE 276
RS +E+
Sbjct: 512 ERSRSKEK 519
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 63.9 bits (154), Expect = 2e-10
Identities = 63/220 (28%), Positives = 94/220 (42%), Gaps = 13/220 (5%)
Query: 78 KGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS 137
KGS + +R A +P+P P P +A S P R RGA + R+ +
Sbjct: 662 KGSSPSRSTREAR--SPQPNKRHSPSPRPRAPQTSSSPPPVR-RGASSSPQRRQSPSPST 718
Query: 138 RSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRS 197
R R S + K K + S S R+ S++ SP P + + +++S
Sbjct: 719 RPIRRVSRTPEPKKIKKAA---SPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQS 775
Query: 198 SSSSSS------SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 251
S++ S + S + S S +S G KK+ K KDK+ KK KK KK KK KEK
Sbjct: 776 PSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEK 835
Query: 252 AEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQA 291
A A A P+ + +E+ PV E K ++
Sbjct: 836 AVAAAAAAAVTPAAIAAATTTLAQEE-PVAAPEPKKETES 874
Score = 54.3 bits (129), Expect = 2e-07
Identities = 48/145 (33%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 88 PASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKR 147
P P P+ SP +K + R+R SR R+RSRS S R +
Sbjct: 248 PKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSK-----SRSRTRSRSPSHTRPRRRH 302
Query: 148 KKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSS 207
+ +SR + R + + P P P RS+ RRR RSS+S S SSSS
Sbjct: 303 RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPP-RHRRSRSPVRRRRRSSASLSGSSSS 361
Query: 208 SSSSSSSS-----SSSSSSDGRKKR 227
SSSS S S +SS RK R
Sbjct: 362 SSSSRSRSPPKKPPKRTSSPPRKTR 386
Score = 52.0 bits (123), Expect = 8e-07
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSE 145
S P R P P A+ PP K R + Q R R + V + S ++ +G +E
Sbjct: 393 SPPRRRHRPSPPATPPP----KTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKG--TE 446
Query: 146 KRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSS 205
KR+ S R S S+ K A++ ++ +Q R+ +SSS S SSS
Sbjct: 447 KRESPSPAPKPRKVELSESEEDKGGKMAAADS------VQQRRQYRRQNQQSSSDSGSSS 500
Query: 206 SSSSSSSSSSSSSSSSDGRKKR-GKYKDKRRKKKKKRKKLKKKGKEK 251
SS S + GR++R + +K++K+ +G+ +
Sbjct: 501 SSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRR 547
Score = 49.3 bits (116), Expect = 5e-06
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSK 188
+R RSRSRS+SR R + R + R+ S S S + +P SP R
Sbjct: 274 TRPRSRSRSKSRSR-TRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRM 332
Query: 189 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 244
R RS S SS+S S SSSSSSSS R K + +K ++L
Sbjct: 333 PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRL 388
Score = 48.9 bits (115), Expect = 7e-06
Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 129 SRKRSRSRSRSRGRG-SEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS----PCI 183
SR RS+SRSR+R R S R ++ + SR+ S + +P P P
Sbjct: 278 SRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPR 337
Query: 184 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243
RS+ RRR RSS+S S SSSS SSSS S K+ + +K +R
Sbjct: 338 HRRSRSPVRRRRRSSASLSGSSSS--------SSSSRSRSPPKKPPKRTSSPPRKTRRLS 389
Query: 244 LKKKGKEKAEAQQVEALPGP 263
+ A P P
Sbjct: 390 PSASPPRRRHRPSPPATPPP 409
Score = 43.9 bits (102), Expect = 2e-04
Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 26/181 (14%)
Query: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
R K + P R SR+ P P S P+ E+ R P R R+
Sbjct: 163 REKRERSRSPRRRKSRS-PSPRRRSSPVRRERKRSHSRSP----------------RHRT 205
Query: 136 RSRSRGRGSEKRKKKSR--------KDTSRNCSASTSQGRKASTAPGAEASPSPCITERS 187
+SRS EK++K K+ S + STS K P + S
Sbjct: 206 KSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNS 265
Query: 188 K-QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKK 246
K +K + +TR S S S S S + S S S + R + Y +RR ++R ++
Sbjct: 266 KKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRR 325
Query: 247 K 247
+
Sbjct: 326 R 326
Score = 41.6 bits (96), Expect = 0.001
Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 5/182 (2%)
Query: 85 PSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGS 144
PS P R +P P SPP+ + R S P R R + R S
Sbjct: 582 PSPPPRRRSPSPRRYSPPI---QRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHS 638
Query: 145 EKRKKKSRKDTSRNCSASTSQGRKAST-APGAEASPSPCITERSKQKARRRTRSSSSSSS 203
K++S T R + +S+ RK S+ + + SP +R R R +SSS
Sbjct: 639 PPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPP 698
Query: 204 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKK-KKKRKKLKKKGKEKAEAQQVEALPG 262
+SSS S S R R + KK KK + + + ++ V P
Sbjct: 699 PVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPE 758
Query: 263 PS 264
P+
Sbjct: 759 PA 760
Score = 39.3 bits (90), Expect = 0.006
Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 21/180 (11%)
Query: 87 RPASRAAPRPEASSPPLPLEKA-RGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSE 145
RP+ R P P +PP + R S R R + A + S S SRSR +
Sbjct: 314 RPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKK 373
Query: 146 KRKKKSRKD-TSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSS 204
K+ S +R S S S R+ P A+P P +TR S + S
Sbjct: 374 PPKRTSSPPRKTRRLSPSASPPRRRH-RPSPPATPPP------------KTRHSPTPQQS 420
Query: 205 SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL------KKKGKEKAEAQQVE 258
+ + S S S +S K +G K + K +K+ + KG + A A V+
Sbjct: 421 NRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQ 480
Score = 38.1 bits (87), Expect = 0.012
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKS--RKDTSRNCSAS---TSQGRKASTAPGAEASPSPCIT 184
R+RSRS R + R R++ S R++ R+ S S ++ R S AP + +P +
Sbjct: 166 RERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAP-EKKEKTPELP 224
Query: 185 ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 244
E S + + ++S+S S + K+ K K+K R + + R K
Sbjct: 225 EPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKS 284
Query: 245 KKKGKEKA 252
+ + + ++
Sbjct: 285 RSRTRSRS 292
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/120 (22%), Positives = 43/120 (35%)
Query: 91 RAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKK 150
+ + E+ SP K S G A V R++ R +++ S
Sbjct: 443 KGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSS 502
Query: 151 SRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSS 210
+ R+ + GR+ +P ASPSP ++ RR RS S + S S
Sbjct: 503 EDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPS 562
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 62.4 bits (150), Expect = 6e-10
Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 35/220 (15%)
Query: 106 EKARGG-LSGPQGGRARGAMAHVGS------RKRSRSRSRSRGRGSEKRKKKSRKDTSRN 158
EKAR G S + +G + V + R +SRS+ R+R R +K+ K +
Sbjct: 152 EKARNGNRSSTRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSDKKKSKGGIEIVKEK 211
Query: 159 CSASTSQGRKASTAPG--------AEASPSPCITERSKQ---KARRRTRSSSSSSSSSSS 207
+ S S+ RK S +P A S SP + RS++ KAR T S S
Sbjct: 212 TTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKS 271
Query: 208 SSSSSSSSSSSSSSDGRKK--------RGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 259
S + S S R K RGK KD+R + K+++ K + KEK +
Sbjct: 272 KDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEK------KP 325
Query: 260 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEE 299
+ PS D S+G+E P + + +++ P +++
Sbjct: 326 IKSPSKD---ASSGKENRSPSRRPGRSPKRRSLSPKPRDK 362
Score = 55.1 bits (131), Expect = 1e-07
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 14/263 (5%)
Query: 85 PSRPASRAAPRPEASSPPLPLEKARGG----LSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
PSR R+ R S P P +K+R L+ + +++ + +R++SRS R
Sbjct: 342 PSRRPGRSPKRRSLS--PKPRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLER 399
Query: 141 GRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSS 200
R +R++ S T + + R +P SP+ RS+ RRR+RS
Sbjct: 400 KRREPERRRLSSPRTRPRDDILSRRERSKDASPINRWSPT---RRRSRSPIRRRSRSPLR 456
Query: 201 SSSSSSSSSSSSSSSSSSSSSDGR-KKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 259
S S S S S R ++R + + RR++ + + K K +E +VE
Sbjct: 457 RSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSEGMKVEQ 516
Query: 260 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKE-EWDARQSIIRKVVDPETGRT 318
S D EEED L ++++ + QA+ K D+ S+ + P++
Sbjct: 517 -ESSSDDNLEDFDVEEEDEEALIEQRRIQRQAIVQKYKYLAEDSNMSVPSEPSSPQSSTR 575
Query: 319 RLIKGDGEVLEEIV--TKERHRE 339
++LE + KE RE
Sbjct: 576 TRSPSPDDILERVAADVKEYERE 598
Score = 51.2 bits (121), Expect = 1e-06
Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 37/255 (14%)
Query: 106 EKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ 165
+K++GG+ + R S++R +S+S S+ S+ + +KS+ T R
Sbjct: 199 KKSKGGIEIVKEKTTRSK-----SKERKKSKSPSKRSKSQDQARKSKSPTLR-------- 245
Query: 166 GRKASTAPGAEASPSP---CITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 222
R++ G SP+ I ++SK K R+++ + S S S S S D
Sbjct: 246 -RRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKD 304
Query: 223 GRKKRGKYKDKRRKKKKKRKKLKKKGKEKA---EAQQVEALPG-----PSLDQWHRSAGE 274
R + + K KR + K++K +K K+ + E + PG SL R
Sbjct: 305 RRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKPRDKSR 364
Query: 275 EEDGPVLTD----EQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEE 330
P+L D + KS + + P + + +S+ RK +PE R RL ++
Sbjct: 365 RSRSPLLNDRRSKQSKSPSRTLSPGRRAK---SRSLERKRREPE--RRRLSSPRTRPRDD 419
Query: 331 IVTKERHREINKQAT 345
I+++ RE +K A+
Sbjct: 420 ILSR---RERSKDAS 431
Score = 41.2 bits (95), Expect = 0.001
Identities = 50/190 (26%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Query: 54 RGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPL------PLEK 107
R P S+ R RD R + A+ P +R +P S P+ PL +
Sbjct: 402 REPERRRLSSPRTRPRDDILSRRERSKDAS----PINRWSPTRRRSRSPIRRRSRSPLRR 457
Query: 108 ARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGR 167
+R + R R G R RSR R RSR RG +R+ +S+ + S S+G
Sbjct: 458 SRSPRRRSRSPRRRDR----GRRSRSRLRRRSRSRGGRRRRSRSKVKEDK-FKGSLSEGM 512
Query: 168 KASTAPGAEASPSPCITERSKQKA----RRRTRSS-----------SSSSSSSSSSSSSS 212
K ++ + E ++A RR R + S+ S S SS S
Sbjct: 513 KVEQESSSDDNLEDFDVEEEDEEALIEQRRIQRQAIVQKYKYLAEDSNMSVPSEPSSPQS 572
Query: 213 SSSSSSSSSD 222
S+ + S S D
Sbjct: 573 STRTRSPSPD 582
Score = 33.9 bits (76), Expect = 0.23
Identities = 36/179 (20%), Positives = 80/179 (44%), Gaps = 10/179 (5%)
Query: 176 EASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 235
+A+ I E + + + ++++ S S SS + + K+ K+K K +
Sbjct: 17 DANSEKSINEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSSEEDKDKKHKHKHKHK 76
Query: 236 KKKKKR--KKLKKKGKEKAEAQQVEALP-GPSLDQWHRSAGEEEDGPVLTDEQKSR---- 288
K K+K K+G A+ +++ L L++ E D ++ + +S
Sbjct: 77 KHKRKEIIDASDKEGMSPAKRTKLDDLALLEDLEKQRALIKAELDNELMEGKVQSGMGLI 136
Query: 289 IQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLE-EIVTKERHREINKQATR 346
+Q + ++EE + + + + + R+ KG E+++ +I TK+R + +K+ TR
Sbjct: 137 LQGYESGSEEEGEIHEK--ARNGNRSSTRSSSTKGKLELVDNKITTKKRSKSRSKERTR 193
Score = 30.8 bits (68), Expect = 2.0
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 27/139 (19%)
Query: 187 SKQKARRRTRSSSSSSSSSSSSSS------------------SSSSSSSSSSSDGRKKRG 228
S+++ ++ + + SS+ SSS+ S S + SD +K +G
Sbjct: 144 SEEEGEIHEKARNGNRSSTRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSDKKKSKG 203
Query: 229 K---YKDK-RRKKKKKRKKLKKKGKEKAEAQQVEALPGPSL-----DQWHRSAGEEEDGP 279
K+K R K K+RKK K K Q P+L ++ ++ +D
Sbjct: 204 GIEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKV 263
Query: 280 VLTDEQKSRIQAMKPMTKE 298
+ D+ KS+ + P+ E
Sbjct: 264 KIEDKSKSKDRKKSPIINE 282
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 62.4 bits (150), Expect = 6e-10
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Query: 137 SRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCIT--ERSKQKARRR 194
+R R E +K+ K T A + + E S ++ E S +K R+
Sbjct: 35 NRPRPTWEEVKKQLENKKTGSKALAEFEEKMNENWKKELEKSREKLLSGNESSSKKRERK 94
Query: 195 TRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 254
+ S SSSSSSSS SSSSSS S D KK+GK +R+KKK + K + ++E+
Sbjct: 95 KKRKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGK---RRKKKKNRSYKSSQSSTHESES 151
Query: 255 QQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKE 298
+ E++ + +E+D L+ ++K KP++ E
Sbjct: 152 ESKESVKKKKKSK--DETEKEKDVRSLSKKRKKSYPDDKPLSSE 193
Score = 54.7 bits (130), Expect = 1e-07
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 131 KRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQK 190
++SR + S S K++++ +K ++C +S+S S++ + +S S E KQ
Sbjct: 74 EKSREKLLSGNESSSKKRERKKKRKKKSCRSSSS-----SSSSDSSSSSSDSEDEEKKQG 128
Query: 191 ARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGK 249
RR+ + + S SS SS+ S S S + KK+ K KD+ K+K R KK+ K
Sbjct: 129 KRRKKKKNRSYKSSQSST-----HESESESKESVKKKKKSKDETEKEKDVRSLSKKRKK 182
Score = 48.9 bits (115), Expect = 7e-06
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITE--- 185
S S S + +G ++KKK+R S S S+ + + S E
Sbjct: 114 SSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEKDV 173
Query: 186 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 245
RS K R+++ SS SSS S + ++R + K+K +KKKKK+ K
Sbjct: 174 RSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKH 233
Query: 246 KKGKEK 251
K K+K
Sbjct: 234 SKKKKK 239
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 62.0 bits (149), Expect = 8e-10
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 17/120 (14%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSK 188
++K+S RSRS+ R S R +SR+ S S+S+ R S + + +S S RS+
Sbjct: 194 NKKKSNRRSRSKSRSSHSRS------SSRSSSPSSSRSRSRSRSRSSSSSQS-----RSR 242
Query: 189 QKARRRTRSSSSSSSSSSSSSSSSSS------SSSSSSSDGRKKRGKYKDKRRKKKKKRK 242
+R R+RS S S SSS S SSS SSSSSS + +KR + + +KKR+
Sbjct: 243 SSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302
Score = 53.1 bits (126), Expect = 4e-07
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQ 189
R RS+SRS S S + SR+ S S+S + S + E S S RS
Sbjct: 201 RSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSS 260
Query: 190 KARRRTRS----SSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKK 238
++ R + S S SSSSSS + S S SSSS D +K+R + + R+ +
Sbjct: 261 RSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHR 313
Score = 52.0 bits (123), Expect = 8e-07
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 119 RARGAMAHVGSRKRS------RSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
R++ +H S RS RSRSRSR R S + +SR + + S+ R +S +
Sbjct: 203 RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRS 262
Query: 173 PGAEASP---SPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSS------SSSSSSSDG 223
+SP S + S ++ R+R+RS SSSS + S S SSS SS G
Sbjct: 263 HRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSG 322
Query: 224 RKKRGKYK 231
+ K K
Sbjct: 323 SRSSSKKK 330
Score = 52.0 bits (123), Expect = 8e-07
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 18/122 (14%)
Query: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
S P R+R SR RS S S+SR R S + + +SR SR S+S+ + S++
Sbjct: 218 SSPSSSRSRSR-----SRSRSSSSSQSRSRSSSRERSRSRGSKSR----SSSRSHRGSSS 268
Query: 173 PGAEA-SPSPCITERSKQKARRRTRSSS--------SSSSSSSSSSSSSSSSSSSSSSDG 223
P + S S ER+++++R R+ SS S S SSS SS S S SS
Sbjct: 269 PRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRSSSK 328
Query: 224 RK 225
+K
Sbjct: 329 KK 330
Score = 48.5 bits (114), Expect = 9e-06
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 90 SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKK 149
SR++ R + S ++R S R+R + SR+RSRSR S+ R S + +
Sbjct: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS-----SRERSRSRG-SKSRSSSRSHR 264
Query: 150 KSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSS 209
S R+ S+S S++P S + S + +RRTRS S SSS
Sbjct: 265 GSSSPRKRSYSSS-------SSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSG 317
Query: 210 SSSSSSSSSS 219
SS S S SSS
Sbjct: 318 SSHSGSRSSS 327
Score = 46.2 bits (108), Expect = 5e-05
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 144 SEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSS 203
SE+ +K R+ S S S ++S+ + +S S+ ++R R+RSSSSS S
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS--------SRSRSRSRSRSSSSSQS 239
Query: 204 -SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR-------KKKKKRKKLKKKGKEKAEAQ 255
S SSS S S S S S R RG ++R ++ RK+ + + + +
Sbjct: 240 RSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRK 299
Query: 256 QVEALPGPSLDQWHR-SAGEEEDGPVLTDEQK 286
+ S ++ HR S+G G + ++K
Sbjct: 300 K-RRTRSRSPERRHRSSSGSSHSGSRSSSKKK 330
Score = 38.9 bits (89), Expect = 0.007
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 185 ERSKQKARRRTRSSSSSSSSSSSSSSSSSS-------SSSSSSSDGRKKRGKYKDKRRKK 237
++S +++R ++RSS S SSS SSS SSS S SSSSS S R + R K
Sbjct: 196 KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSK 255
Query: 238 KKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKP 294
+ + + + + P ++ + G D +K R ++ P
Sbjct: 256 SRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG----DRKKRRTRSRSP 308
Score = 36.6 bits (83), Expect = 0.036
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 130 RKRSRSRSRSRGRGS--EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERS 187
RK+ + R ++ G S ++ + K + + S+ + +A S + S
Sbjct: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
Query: 188 KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK 247
+++ + +S+ S S S SS S SSS SSS SS + R + + + + R +++
Sbjct: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRER 248
Query: 248 GKEK 251
+ +
Sbjct: 249 SRSR 252
Score = 35.8 bits (81), Expect = 0.061
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 80 SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRS 139
S ++ S+ SR++ R + S + G R R + S +R+R RSRS
Sbjct: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRS 290
Query: 140 RGRGSEKRKKKSRKDTS-----RNCSASTSQGRKAST 171
R S RKK+ + S R+ S S+ G ++S+
Sbjct: 291 RSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRSSS 327
Score = 35.0 bits (79), Expect = 0.10
Identities = 26/89 (29%), Positives = 35/89 (39%)
Query: 158 NCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSS 217
N AS + + S S RS ++ + S S S S S SSSSS S S S
Sbjct: 184 NLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRS 243
Query: 218 SSSSDGRKKRGKYKDKRRKKKKKRKKLKK 246
SS R + K + R + K+
Sbjct: 244 SSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 62.0 bits (149), Expect = 8e-10
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 17/120 (14%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSK 188
++K+S RSRS+ R S R +SR+ S S+S+ R S + + +S S RS+
Sbjct: 194 NKKKSNRRSRSKSRSSHSRS------SSRSSSPSSSRSRSRSRSRSSSSSQS-----RSR 242
Query: 189 QKARRRTRSSSSSSSSSSSSSSSSSS------SSSSSSSDGRKKRGKYKDKRRKKKKKRK 242
+R R+RS S S SSS S SSS SSSSSS + +KR + + +KKR+
Sbjct: 243 SSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302
Score = 49.7 bits (117), Expect = 4e-06
Identities = 39/115 (33%), Positives = 51/115 (44%), Gaps = 22/115 (19%)
Query: 119 RARGAMAHVGSRKRS------RSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
R++ +H S RS RSRSRSR R S + +SR + + S+ R +S +
Sbjct: 203 RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRS 262
Query: 173 PGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 227
+SP R S SSSSSS + S S SSSS RKKR
Sbjct: 263 HRGSSSP----------------RKRSYSSSSSSPERNRKRSRSRSSSSGDRKKR 301
Score = 46.6 bits (109), Expect = 3e-05
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
S P R+R SR RSRS S S+ R +++SR S+ S S+S+ + S++
Sbjct: 218 SSPSSSRSR-------SRSRSRSSSSSQSRSRSSSRERSRSRGSK--SRSSSRSHRGSSS 268
Query: 173 PGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 226
P + S + S ++ R+R+RS SSSS + S S S + K+
Sbjct: 269 PRKRSYSS---SSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQVIGENTKQ 319
Score = 45.4 bits (106), Expect = 8e-05
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 144 SEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSS 203
SE+ +K R+ S S S ++S+ + +S S+ ++R R+RSSSSS S
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS--------SRSRSRSRSRSSSSSQS 239
Query: 204 -SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKR-----------RKKKKKRKKLKKKGKEK 251
S SSS S S S S S R RG ++ R +K+ R + G K
Sbjct: 240 RSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRK 299
Score = 44.7 bits (104), Expect = 1e-04
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 185 ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 244
+ +K+K+ RR+RS S SS S SSS SSS SSS S S + R + R + R++
Sbjct: 192 DSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRS--RSRSSSSSQSRSRSSSRERS 249
Query: 245 KKKG-KEKAEAQQVEALPGPSLDQWHRSAGEEE 276
+ +G K ++ ++ P + S+ E
Sbjct: 250 RSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282
Score = 38.9 bits (89), Expect = 0.007
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 185 ERSKQKARRRTRSSSSSSSSSSSSSSSSSS-------SSSSSSSDGRKKRGKYKDKRRKK 237
++S +++R ++RSS S SSS SSS SSS S SSSSS S R + R K
Sbjct: 196 KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSK 255
Query: 238 KKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKP 294
+ + + + + P ++ + G D +K R ++ P
Sbjct: 256 SRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG----DRKKRRTRSRSP 308
Score = 36.6 bits (83), Expect = 0.036
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 130 RKRSRSRSRSRGRGS--EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERS 187
RK+ + R ++ G S ++ + K + + S+ + +A S + S
Sbjct: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
Query: 188 KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK 247
+++ + +S+ S S S SS S SSS SSS SS + R + + + + R +++
Sbjct: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRER 248
Query: 248 GKEK 251
+ +
Sbjct: 249 SRSR 252
Score = 35.0 bits (79), Expect = 0.10
Identities = 26/89 (29%), Positives = 35/89 (39%)
Query: 158 NCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSS 217
N AS + + S S RS ++ + S S S S S SSSSS S S S
Sbjct: 184 NLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRS 243
Query: 218 SSSSDGRKKRGKYKDKRRKKKKKRKKLKK 246
SS R + K + R + K+
Sbjct: 244 SSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
Score = 35.0 bits (79), Expect = 0.10
Identities = 25/81 (30%), Positives = 36/81 (44%)
Query: 178 SPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKK 237
S S + S+ +R + SSS S S S S SSSSS S S SSS R + K + +
Sbjct: 202 SRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSR 261
Query: 238 KKKRKKLKKKGKEKAEAQQVE 258
+ +K + + E
Sbjct: 262 SHRGSSSPRKRSYSSSSSSPE 282
Score = 32.3 bits (72), Expect = 0.68
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 80 SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRS 139
S ++ S+ SR++ R + S + G R R + S +R+R RSRS
Sbjct: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRS 290
Query: 140 RGRGS---EKRKKKSRKDTSRNCSASTSQ 165
R S +KR+ +SR S+ +T Q
Sbjct: 291 RSSSSGDRKKRRTRSRSPESQVIGENTKQ 319
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 62.0 bits (149), Expect = 8e-10
Identities = 72/287 (25%), Positives = 108/287 (37%), Gaps = 37/287 (12%)
Query: 20 PRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKG 79
P P + A AA AA+A + C + GP + G+ R G R +G
Sbjct: 52 PPPPPPLLFLAAPGTAAAAAAAAAASSS---CFSPGPPLEVKRLARGKRRAGGRQKRRRG 108
Query: 80 SGAAL------------PSRPASRAAPRPEASSPPLPLEKAR---------GGLSGPQGG 118
A P + A +P + E GG S
Sbjct: 109 PRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAA 168
Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTS-RNCSASTSQGRKASTAPGAEA 177
A G G S S ++ RG GSE+R ++ R+ +S R+ R+ G+EA
Sbjct: 169 TAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHREHRRRDGQRGGSEA 228
Query: 178 SPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKK 237
S S S ++ +S SSSSS S+S++SSSSSS D K + + K K+
Sbjct: 229 SKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKE 288
Query: 238 K----KKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPV 280
K+ K ++ K + +A + P G +D PV
Sbjct: 289 PPSAYKEPPKAYREDKTEPKAYRRRRSLSP--------LGGRDDSPV 327
Score = 43.1 bits (100), Expect = 4e-04
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 116 QGGRARGAMAHVGSRKRSRSRSR---SRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
+ G++R + S + SRSRSR SR R S + +A ++ +KA A
Sbjct: 405 RSGKSRSRSPY--SSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAA 462
Query: 173 PGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKD 232
A A+ + E + KA ++ +S++S+ + ++ +S+S+S ++ K K K
Sbjct: 463 EAARAAEAAKAAEAT--KAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKDVKKIKI 520
Query: 233 KRRKKKKKRKKLKK-KGKEKAEAQQVEALPGPSLDQWHRSA---GEEEDGPVLTDEQKSR 288
+ LK K K K Q + +D+ + A G+E +E S
Sbjct: 521 EHAPSPSSGGTLKNDKAKTKPPLQVTKVENNLIVDKATKKAVIVGKESKSAATKEESVSL 580
Query: 289 IQAMKPMT 296
+ KP+T
Sbjct: 581 KEKTKPLT 588
Score = 37.0 bits (84), Expect = 0.027
Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 31/188 (16%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPL-----PLEKARGGLSGP 115
+S+ GGR + + T S ++ R + R ++S P P + R + P
Sbjct: 251 SSSSGGRRKSAS---ATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPPKAYREDKTEP 307
Query: 116 QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGA 175
+ R R +++ +G R S R+ + +SRK S S+ R+
Sbjct: 308 KAYRRRRSLSPLGGRDDSPVSHRA------SQSLRSRKSPSPAGGGSSPYSRRLPR---- 357
Query: 176 EASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 235
SPSP +RRR S S S SS S S SSS R+ R Y R
Sbjct: 358 --SPSPY--------SRRR---SPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPVLR 404
Query: 236 KKKKKRKK 243
+ K R +
Sbjct: 405 RSGKSRSR 412
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 62.0 bits (149), Expect = 8e-10
Identities = 72/287 (25%), Positives = 108/287 (37%), Gaps = 37/287 (12%)
Query: 20 PRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKG 79
P P + A AA AA+A + C + GP + G+ R G R +G
Sbjct: 52 PPPPPPLLFLAAPGTAAAAAAAAAASSS---CFSPGPPLEVKRLARGKRRAGGRQKRRRG 108
Query: 80 SGAAL------------PSRPASRAAPRPEASSPPLPLEKAR---------GGLSGPQGG 118
A P + A +P + E GG S
Sbjct: 109 PRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAA 168
Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTS-RNCSASTSQGRKASTAPGAEA 177
A G G S S ++ RG GSE+R ++ R+ +S R+ R+ G+EA
Sbjct: 169 TAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHREHRRRDGQRGGSEA 228
Query: 178 SPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKK 237
S S S ++ +S SSSSS S+S++SSSSSS D K + + K K+
Sbjct: 229 SKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKE 288
Query: 238 K----KKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPV 280
K+ K ++ K + +A + P G +D PV
Sbjct: 289 PPSAYKEPPKAYREDKTEPKAYRRRRSLSP--------LGGRDDSPV 327
Score = 43.1 bits (100), Expect = 4e-04
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 116 QGGRARGAMAHVGSRKRSRSRSR---SRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
+ G++R + S + SRSRSR SR R S + +A ++ +KA A
Sbjct: 405 RSGKSRSRSPY--SSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAA 462
Query: 173 PGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKD 232
A A+ + E + KA ++ +S++S+ + ++ +S+S+S ++ K K K
Sbjct: 463 EAARAAEAAKAAEAT--KAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKDVKKIKI 520
Query: 233 KRRKKKKKRKKLKK-KGKEKAEAQQVEALPGPSLDQWHRSA---GEEEDGPVLTDEQKSR 288
+ LK K K K Q + +D+ + A G+E +E S
Sbjct: 521 EHAPSPSSGGTLKNDKAKTKPPLQVTKVENNLIVDKATKKAVIVGKESKSAATKEESVSL 580
Query: 289 IQAMKPMT 296
+ KP+T
Sbjct: 581 KEKTKPLT 588
Score = 37.0 bits (84), Expect = 0.027
Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 31/188 (16%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPL-----PLEKARGGLSGP 115
+S+ GGR + + T S ++ R + R ++S P P + R + P
Sbjct: 251 SSSSGGRRKSAS---ATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPPKAYREDKTEP 307
Query: 116 QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGA 175
+ R R +++ +G R S R+ + +SRK S S+ R+
Sbjct: 308 KAYRRRRSLSPLGGRDDSPVSHRA------SQSLRSRKSPSPAGGGSSPYSRRLPR---- 357
Query: 176 EASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 235
SPSP +RRR S S S SS S S SSS R+ R Y R
Sbjct: 358 --SPSPY--------SRRR---SPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPVLR 404
Query: 236 KKKKKRKK 243
+ K R +
Sbjct: 405 RSGKSRSR 412
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 61.6 bits (148), Expect = 1e-09
Identities = 65/252 (25%), Positives = 100/252 (39%), Gaps = 17/252 (6%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
R R W + SR +S+ +SSP +++ G Q +R +
Sbjct: 349 RGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPN 408
Query: 127 VGSRKRSRSRSRSRGRG-SEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITE 185
+R RSRSRS + R S R +D SR+ S ++ R S +P S
Sbjct: 409 K-ARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHS---RS 464
Query: 186 RSKQKARRRTRSSSSSSSSSSSSSSSSS-------SSSSSSSSDGRKKRG--KYKDKRRK 236
RS KAR R+RS S S S S S S S S R+ R K +D RR
Sbjct: 465 RSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRS 524
Query: 237 KKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH---RSAGEEEDGPVLTDEQKSRIQAMK 293
+ +++ +++ + + + PS ++ H RS +E D K R +
Sbjct: 525 RSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQS 584
Query: 294 PMTKEEWDARQS 305
+ EE D +S
Sbjct: 585 RSSSEERDHSRS 596
Score = 51.6 bits (122), Expect = 1e-06
Identities = 66/244 (27%), Positives = 89/244 (36%), Gaps = 41/244 (16%)
Query: 95 RPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-------GRGSEKR 147
RP++ S ++R G R R +H R SR+RSR+R GR S+ R
Sbjct: 277 RPQSHSQSRSPRRSRSGSQKRTHSRVR---SHSWKRNHSRARSRTRKGILSQMGRHSQSR 333
Query: 148 KKKSRKDTSRNCSASTSQGRKA--STAPGAEASPSPCITERSKQKARRRTRSSSSSSSSS 205
K S+N S + +GR S P E S S RS K R SSS S
Sbjct: 334 SHSKGK--SQNQSRTPRRGRSHNWSRNPSKERSHS---HSRSSSKERDHRGSSSPRKESG 388
Query: 206 SSSSSS-------SSSSSSSSSSDGRKKRGKYKDKRRKKK----------------KKRK 242
S S S S S S + + D + R YK + R + K R
Sbjct: 389 RSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARD 448
Query: 243 KLKKKGKEKAEAQQVEALPGPSLDQWH-RSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWD 301
+ + + KA P + D+ RS +E D L K R +E
Sbjct: 449 RSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQ 508
Query: 302 ARQS 305
RQS
Sbjct: 509 CRQS 512
Score = 50.4 bits (119), Expect = 2e-06
Identities = 55/216 (25%), Positives = 83/216 (38%), Gaps = 30/216 (13%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAM-------AHVGSRKRSRSRSR 138
SR +A R + SP + +R R+R + +GS + R R
Sbjct: 440 SRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRR 499
Query: 139 SRGRGSEKRKKKSR-----KDTSRNCSASTSQGRKASTAPGAEA------SPSPCITER- 186
SR E++ ++SR +D R+ S S + R+ S +P E SPS R
Sbjct: 500 SRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQ 559
Query: 187 ----SKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRK---KRGKYKDKRRKKKK 239
SK++ RRR RS S S SSS S S S ++ R + K + +
Sbjct: 560 SRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSR 619
Query: 240 KRKKLKKKGKEKAEAQQVEALPG----PSLDQWHRS 271
R K+ ++ E+ P P W RS
Sbjct: 620 SRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRS 655
Score = 42.4 bits (98), Expect = 7e-04
Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSE 145
SR S+ R SP E+ + S + +R SR ++ SR R S
Sbjct: 560 SRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSR-------SRSPNKQSGYSRPRASS 612
Query: 146 KRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSS 205
K K SR T + SQ R +S E+ PS RS R TR+SS S + +
Sbjct: 613 KEKAHSRSRTPSK-EGNHSQSRTSSK----ESDPSQSTVPRSPDWKRSPTRTSSLSQNRT 667
Query: 206 SSSSSSSSSSSSSS 219
S +SS S S+ S
Sbjct: 668 PSKTSSHSPSTFPS 681
Score = 40.4 bits (93), Expect = 0.002
Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 18/189 (9%)
Query: 85 PSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGS 144
P+ +SR +AS+ P ++ P+ R+ G+ SR RS S R+ R
Sbjct: 259 PTEMSSRVKSYNQASTRSRPQSHSQS--RSPRRSRS-GSQKRTHSRVRSHSWKRNHSRAR 315
Query: 145 EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSS 204
+ +K R+ SQ R S S +P R + R S S S
Sbjct: 316 SRTRKGILSQMGRH-----SQSRSHSKGKSQNQSRTP---RRGRSHNWSRNPSKERSHSH 367
Query: 205 SSSSS-------SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQV 257
S SSS SSS S S G + + + R K R + + + KA +
Sbjct: 368 SRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSR 427
Query: 258 EALPGPSLD 266
P + D
Sbjct: 428 SRSPNKARD 436
Score = 37.4 bits (85), Expect = 0.021
Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 17/183 (9%)
Query: 80 SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRS 139
SG+++P+ A P+P AS L + +R ++ S K ++S S
Sbjct: 17 SGSSMPT-----ADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKSTKSTSTK 71
Query: 140 RG---RGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTR 196
R R S + + +S+ T S T KAS A R + RR +R
Sbjct: 72 RAPSNRPSSRSRVRSKARTPSRVSTDTRTS-KASKASDVRCHQRRGTHSRGRTPGRRGSR 130
Query: 197 SSSSSSSSSSS--------SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 248
SS S S +S+ + +S + +S + RGK + R ++R + +
Sbjct: 131 SSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQPRN 190
Query: 249 KEK 251
K
Sbjct: 191 LSK 193
Score = 33.1 bits (74), Expect = 0.40
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 9/140 (6%)
Query: 87 RPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAM-----AHVGSRKRSRSRSRSRG 141
R S+ R ++ S + +R Q G +R AH SR S+ + S+
Sbjct: 573 RSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQS 632
Query: 142 RGSEKRKKKSRKDTSRNCSASTSQGRKASTA----PGAEASPSPCITERSKQKARRRTRS 197
R S K S+ R+ S R +S + P +S SP Q +
Sbjct: 633 RTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHSPSTFPSGGQTLSQDDSQ 692
Query: 198 SSSSSSSSSSSSSSSSSSSS 217
+ +++S ++ SSSSSS
Sbjct: 693 ADATTSKATLPGERSSSSSS 712
Score = 29.3 bits (64), Expect = 5.7
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 144 SEKRKKKSRKDTSRNCSASTSQGRK--ASTAPGAEASPSPCITERSKQKARRRTRSSSSS 201
S KR K + + S+ + K AS A+P+ + +R S SSS
Sbjct: 3 SPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSSS 62
Query: 202 SSSSSSSSSSSSSSSSSSSSDGRKK 226
S+ S+S+ + S+ SS S R K
Sbjct: 63 KSTKSTSTKRAPSNRPSSRSRVRSK 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.123 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,667,175
Number of Sequences: 37866
Number of extensions: 872423
Number of successful extensions: 35030
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 1324
Number of HSP's that attempted gapping in prelim test: 12714
Number of HSP's gapped (non-prelim): 10356
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.