SMNDC1 31534

Name: SMNDC1	Sequence: fasta or formatted (238aa)		NCBI GI: 5032113
Description: survival motor neuron domain containing 1		Referenced in: Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.4 20 2 C cysteine 1.3 3 1 D aspartate 5.0 12 1 E glutamate 10.5 25 2 F phenylalanine 1.7 4 1 G glycine 5.9 14 1 H histidine 0.8 2 1 I isoleucine 3.4 8 1 K lysine 12.6 30 4 L leucine 7.6 18 2 M methionine 2.5 6 1 N asparagine 4.2 10 2 P proline 3.4 8 1 Q glutamine 8.0 19 2 R arginine 2.9 7 1 S serine 7.6 18 2 T threonine 5.0 12 1 V valine 5.0 12 1 W tryptophan 1.3 3 1 Y tyrosine 2.9 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 survival motor neuron domain containing 1 SMN2 0.078 survival of motor neuron 2, centromeric isoform b [H... SMN2 0.078 survival of motor neuron 2, centromeric isoform c [H... SMN2 0.078 survival of motor neuron 2, centromeric isoform d [H... SMN2 0.078 survival of motor neuron 2, centromeric isoform a [H... SMN1 0.078 survival of motor neuron 1, telomeric isoform d [Homo... SMN1 0.078 survival of motor neuron 1, telomeric isoform b [Hom... TDRD3 0.067 tudor domain containing 3 isoform 2 TDRD3 0.067 tudor domain containing 3 isoform 1 TDRD3 0.067 tudor domain containing 3 isoform 2 ZGPAT 0.049 zinc finger, CCCH-type with G patch domain isoform ... ZGPAT 0.049 zinc finger, CCCH-type with G patch domain isoform ... ZGPAT 0.049 zinc finger, CCCH-type with G patch domain isoform ... RNF20 0.036 ring finger protein 20 SR140 0.036 U2-associated SR140 protein MATR3 0.029 matrin 3 MATR3 0.029 matrin 3 CHAF1A 0.027 chromatin assembly factor 1, subunit A (p150) DDX55 0.027 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 TDRD1 0.027 tudor domain containing 1 ROCK2 0.024 Rho-associated, coiled-coil containing protein kinas... AKAP12 0.024 A kinase (PRKA) anchor protein 12 isoform 1 AKAP12 0.024 A kinase (PRKA) anchor protein 12 isoform 2 HOOK1 0.024 hook homolog 1 PHRF1 0.024 PHD and ring finger domains 1 SMC2 0.024 structural maintenance of chromosomes 2 SMC2 0.024 structural maintenance of chromosomes 2 SMC2 0.024 structural maintenance of chromosomes 2 CHD2 0.024 chromodomain helicase DNA binding protein 2 isoform... PHF14 0.024 PHD finger protein 14 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.