Guide to the Human Genome
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Name: CNIH Sequence: fasta or formatted (144aa) NCBI GI: 5031639
Description:

cornichon-like

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         16           2
 C cysteine            4.2          6           1
 D aspartate           3.5          5           1
 E glutamate           2.8          4           1
 F phenylalanine       8.3         12           2
 G glycine             3.5          5           1
 H histidine           2.1          3           1
 I isoleucine          6.9         10           2
 K lysine              2.8          4           1
 L leucine            16.0         23           3
 M methionine          5.6          8           1
 N asparagine          3.5          5           1
 P proline             4.9          7           1
 Q glutamine           1.4          2           1
 R arginine            1.4          2           1
 S serine              2.8          4           2
 T threonine           4.9          7           2
 V valine              3.5          5           1
 W tryptophan          2.8          4           1
 Y tyrosine            8.3         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cornichon-like 
CNIH3                 0.715   cornichon homolog 3 
CNIH2                 0.701   cornichon homolog 2 
CNIH4                 0.260   cornichon homolog 4 
DNAH10                0.014   dynein, axonemal, heavy chain 10 
ADAD2                 0.007   adenosine deaminase domain containing 2 isoform 2 [...
ADAD2                 0.007   adenosine deaminase domain containing 2 isoform 1 [...
OR52A4                0.007   olfactory receptor, family 52, subfamily A, member 4...
TIE1                  0.007   tyrosine kinase with immunoglobulin-like and EGF-like...
NMUR2                 0.007   neuromedin U receptor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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