Guide to the Human Genome
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Name: CNIH3 Sequence: fasta or formatted (160aa) NCBI GI: 22749039
Description:

cornichon homolog 3

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         14           2
 C cysteine            6.2         10           1
 D aspartate           3.8          6           1
 E glutamate           4.4          7           1
 F phenylalanine      10.0         16           2
 G glycine             0.6          1           1
 H histidine           3.1          5           1
 I isoleucine          6.2         10           2
 K lysine              2.5          4           1
 L leucine            15.0         24           2
 M methionine          3.1          5           1
 N asparagine          2.5          4           1
 P proline             4.4          7           2
 Q glutamine           1.9          3           1
 R arginine            4.4          7           1
 S serine              6.2         10           2
 T threonine           3.1          5           1
 V valine              4.4          7           2
 W tryptophan          2.5          4           1
 Y tyrosine            6.9         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cornichon homolog 3 
CNIH2                 0.820   cornichon homolog 2 
CNIH                  0.634   cornichon-like 
CNIH4                 0.186   cornichon homolog 4 
GPR107                0.022   G protein-coupled receptor 107 isoform 2 
FMN2                  0.013   formin 2 
RIPK2                 0.009   receptor-interacting serine-threonine kinase 2 
GPR107                0.009   G protein-coupled receptor 107 isoform 1 
KMO                   0.006   kynurenine 3-monooxygenase 
DLG4                  0.006   post-synaptic density protein 95 isoform 1 
DLG4                  0.006   post-synaptic density protein 95 isoform 2 
CFHR4                 0.006   complement factor H-related 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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