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Search of human proteins with 4885385
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885385 H3 histone, family 3B [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885385 H3 histone, family 3B [Homo sapiens] 265 1e-71
gi|4504279 H3 histone, family 3A [Homo sapiens] 265 1e-71
gi|53793688 histone cluster 2, H3a [Homo sapiens] 258 8e-70
gi|31742503 histone cluster 2, H3c [Homo sapiens] 258 8e-70
gi|183076548 histone cluster 2, H3d [Homo sapiens] 258 8e-70
gi|4504287 histone cluster 1, H3e [Homo sapiens] 256 3e-69
gi|4504295 histone cluster 1, H3h [Homo sapiens] 256 3e-69
gi|4504289 histone cluster 1, H3i [Homo sapiens] 256 3e-69
gi|4504281 histone cluster 1, H3a [Homo sapiens] 256 3e-69
gi|10440560 histone cluster 1, H3f [Homo sapiens] 256 3e-69
gi|21071021 histone cluster 1, H3d [Homo sapiens] 256 3e-69
gi|4504297 histone cluster 1, H3b [Homo sapiens] 256 3e-69
gi|4504293 histone cluster 1, H3j [Homo sapiens] 256 3e-69
gi|4504285 histone cluster 1, H3c [Homo sapiens] 256 3e-69
gi|4504291 H3 histone family, member H [Homo sapiens] 256 3e-69
gi|4504299 histone cluster 3, H3 [Homo sapiens] 251 1e-67
gi|188528667 histone H3-like [Homo sapiens] 248 8e-67
gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens] 222 8e-59
gi|169167761 PREDICTED: similar to HIStone family member (his-72... 218 9e-58
gi|88987392 PREDICTED: similar to HIStone family member (his-72)... 218 9e-58
gi|41147170 PREDICTED: similar to HIStone family member (his-72)... 218 9e-58
gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens] 214 2e-56
gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens] 164 3e-41
gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens] 164 3e-41
gi|4502775 centromere protein A isoform a [Homo sapiens] 109 6e-25
gi|109637779 centromere protein A isoform b [Homo sapiens] 83 8e-17
gi|126722969 centromere protein T [Homo sapiens] 32 0.12
gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens] 32 0.12
gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens] 32 0.12
gi|4507963 zinc finger protein 37 homolog [Homo sapiens] 32 0.16
>gi|4885385 H3 histone, family 3B [Homo sapiens]
Length = 136
Score = 265 bits (676), Expect = 1e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504279 H3 histone, family 3A [Homo sapiens]
Length = 136
Score = 265 bits (676), Expect = 1e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|53793688 histone cluster 2, H3a [Homo sapiens]
Length = 136
Score = 258 bits (660), Expect = 8e-70
Identities = 132/136 (97%), Positives = 135/136 (99%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|31742503 histone cluster 2, H3c [Homo sapiens]
Length = 136
Score = 258 bits (660), Expect = 8e-70
Identities = 132/136 (97%), Positives = 135/136 (99%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|183076548 histone cluster 2, H3d [Homo sapiens]
Length = 136
Score = 258 bits (660), Expect = 8e-70
Identities = 132/136 (97%), Positives = 135/136 (99%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504287 histone cluster 1, H3e [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504295 histone cluster 1, H3h [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504289 histone cluster 1, H3i [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504281 histone cluster 1, H3a [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|10440560 histone cluster 1, H3f [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|21071021 histone cluster 1, H3d [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504297 histone cluster 1, H3b [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504293 histone cluster 1, H3j [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504285 histone cluster 1, H3c [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504291 H3 histone family, member H [Homo sapiens]
Length = 136
Score = 256 bits (655), Expect = 3e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504299 histone cluster 3, H3 [Homo sapiens]
Length = 136
Score = 251 bits (641), Expect = 1e-67
Identities = 127/136 (93%), Positives = 132/136 (97%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATK ARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRL+REIAQDFKTDLRFQS+A+ ALQEA E+YLVGLFEDTNLC IHAKRVTI
Sbjct: 61 LLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|188528667 histone H3-like [Homo sapiens]
Length = 135
Score = 248 bits (634), Expect = 8e-67
Identities = 130/136 (95%), Positives = 131/136 (96%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKS PST GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDF TDLRFQSAA+GALQEASEAYLVGL EDTNLCAIHAKRVTI
Sbjct: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 120 MPKDIQLARRIRGERA 135
>gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]
Length = 147
Score = 222 bits (565), Expect = 8e-59
Identities = 112/136 (82%), Positives = 124/136 (91%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARK+T +APRK LATKAARK A TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1 MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LL+RKLPFQRLVREIAQ DLRFQSAAIGALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MP+D+QLARR+RGE A
Sbjct: 121 MPRDMQLARRLRGEGA 136
>gi|169167761 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 218 bits (556), Expect = 9e-58
Identities = 110/134 (82%), Positives = 122/134 (91%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARK+T +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1 MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LL+RKLPFQRLVREIAQ DLRFQSAAIGALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
Query: 121 MPKDIQLARRIRGE 134
MP+D+QLARR+R E
Sbjct: 121 MPRDMQLARRLRRE 134
>gi|88987392 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 218 bits (556), Expect = 9e-58
Identities = 110/134 (82%), Positives = 122/134 (91%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARK+T +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1 MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LL+RKLPFQRLVREIAQ DLRFQSAAIGALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
Query: 121 MPKDIQLARRIRGE 134
MP+D+QLARR+R E
Sbjct: 121 MPRDMQLARRLRRE 134
>gi|41147170 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 218 bits (556), Expect = 9e-58
Identities = 110/134 (82%), Positives = 122/134 (91%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARK+T +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1 MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LL+RKLPFQRLVREIAQ DLRFQSAAIGALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
Query: 121 MPKDIQLARRIRGE 134
MP+D+QLARR+R E
Sbjct: 121 MPRDMQLARRLRRE 134
>gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens]
Length = 141
Score = 214 bits (544), Expect = 2e-56
Identities = 109/122 (89%), Positives = 116/122 (95%)
Query: 15 KAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 74
KA RKQL TKAA KSAPSTGGVKKPH YRPGTVALREIRRYQK+TELLIRKL FQRLV+E
Sbjct: 20 KAARKQLGTKAAHKSAPSTGGVKKPHHYRPGTVALREIRRYQKATELLIRKLRFQRLVQE 79
Query: 75 IAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134
IAQD KTDLRFQSAAIGALQEASEAYLVGLFED+NLCAIHAKR+TIMPK+IQLARRI+G+
Sbjct: 80 IAQDLKTDLRFQSAAIGALQEASEAYLVGLFEDSNLCAIHAKRLTIMPKEIQLARRIQGK 139
Query: 135 RA 136
RA
Sbjct: 140 RA 141
>gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens]
Length = 193
Score = 164 bits (414), Expect = 3e-41
Identities = 83/101 (82%), Positives = 91/101 (90%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARK+T +APRK LATKAARK A TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 46 MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 105
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYL 101
LL+RKLPFQRLVREIAQ DLRFQSAAIGALQEASEAYL
Sbjct: 106 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 146
>gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens]
Length = 193
Score = 164 bits (414), Expect = 3e-41
Identities = 83/101 (82%), Positives = 91/101 (90%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARK+T +APRK LATKAARK A TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 46 MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 105
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYL 101
LL+RKLPFQRLVREIAQ DLRFQSAAIGALQEASEAYL
Sbjct: 106 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 146
>gi|4502775 centromere protein A isoform a [Homo sapiens]
Length = 140
Score = 109 bits (273), Expect = 6e-25
Identities = 68/132 (51%), Positives = 83/132 (62%), Gaps = 9/132 (6%)
Query: 9 RKSTGGKAPRKQ----LATKAARKSAPSTGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
R+S +APR++ T + PS G H R R G L+EIR+ QKST LLI
Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
Query: 64 RKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121
RKLPF RL REI F D +Q+ A+ ALQEA+EA+LV LFED L +HA RVT+
Sbjct: 63 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
Query: 122 PKDIQLARRIRG 133
PKD+QLARRIRG
Sbjct: 123 PKDVQLARRIRG 134
>gi|109637779 centromere protein A isoform b [Homo sapiens]
Length = 114
Score = 82.8 bits (203), Expect = 8e-17
Identities = 57/130 (43%), Positives = 69/130 (53%), Gaps = 31/130 (23%)
Query: 9 RKSTGGKAPRKQ----LATKAARKSAPSTGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
R+S +APR++ T + PS G H R R G L+EIR+ QKST LLI
Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
Query: 64 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123
RKLPF RL A+EA+LV LFED L +HA RVT+ PK
Sbjct: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
Query: 124 DIQLARRIRG 133
D+QLARRIRG
Sbjct: 99 DVQLARRIRG 108
>gi|126722969 centromere protein T [Homo sapiens]
Length = 561
Score = 32.3 bits (72), Expect = 0.12
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 79 FKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
F + + A+ +++ + Y L +D + A HA R T+ P+D++L R +G
Sbjct: 469 FYAKMPMERKALEMVEKCLDKYFQHLCDDLEVFAAHAGRKTVKPEDLELLMRRQG 523
>gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]
Length = 257
Score = 32.3 bits (72), Expect = 0.12
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 61
A ++ T+ + + P++ +TKA ++ G ++ H R G Y
Sbjct: 113 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 166
Query: 62 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121
F R+++++ Q L A+ + L + + A + KRVTI
Sbjct: 167 ------FPRVLKQVHQG----LSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 216
Query: 122 PKDIQLARRI 131
+DIQ+A R+
Sbjct: 217 SRDIQMAVRL 226
>gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]
Length = 257
Score = 32.3 bits (72), Expect = 0.12
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 61
A ++ T+ + + P++ +TKA ++ G ++ H R G Y
Sbjct: 113 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 166
Query: 62 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121
F R+++++ Q L A+ + L + + A + KRVTI
Sbjct: 167 ------FPRVLKQVHQG----LSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 216
Query: 122 PKDIQLARRI 131
+DIQ+A R+
Sbjct: 217 SRDIQMAVRL 226
>gi|4507963 zinc finger protein 37 homolog [Homo sapiens]
Length = 630
Score = 32.0 bits (71), Expect = 0.16
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 11 STGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ- 69
S G +AP+ + +K + AP G K+P + P +A R QK T+ ++K Q
Sbjct: 70 SMGCQAPKPDMISKLEKGEAPWLGKGKRPSQGCPSKIA----RPKQKETDGKVQKDDDQL 125
Query: 70 --------RLVREIAQDFKTDLRFQSAAIGAL 93
+L+RE+A KT + + G+L
Sbjct: 126 ENIQKSQNKLLREVAVKKKTQAKKNGSDCGSL 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,484,048
Number of Sequences: 37866
Number of extensions: 164177
Number of successful extensions: 625
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 58
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.