Guide to the Human Genome
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Name: SPOPL Sequence: fasta or formatted (392aa) NCBI GI: 48717263
Description:

speckle-type POZ protein-like

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         29           3
 C cysteine            3.1         12           1
 D aspartate           5.9         23           2
 E glutamate           7.7         30           2
 F phenylalanine       5.6         22           2
 G glycine             4.1         16           1
 H histidine           1.5          6           1
 I isoleucine          2.8         11           1
 K lysine              7.9         31           2
 L leucine             9.9         39           3
 M methionine          3.6         14           2
 N asparagine          5.4         21           2
 P proline             4.1         16           2
 Q glutamine           3.3         13           1
 R arginine            5.6         22           2
 S serine              8.4         33           2
 T threonine           4.1         16           1
 V valine              6.1         24           2
 W tryptophan          1.8          7           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   speckle-type POZ protein-like 
SPOP                  0.805   speckle-type POZ protein 
SPOP                  0.805   speckle-type POZ protein 
SPOP                  0.805   speckle-type POZ protein 
SPOP                  0.805   speckle-type POZ protein 
SPOP                  0.805   speckle-type POZ protein 
SPOP                  0.805   speckle-type POZ protein 
KLHL7                 0.078   kelch-like 7 isoform 1 
KLHL7                 0.076   kelch-like 7 isoform 2 
KBTBD2                0.070   kelch repeat and BTB (POZ) domain containing 2 [Hom...
BTBD9                 0.069   BTB (POZ) domain containing 9 isoform a 
BTBD9                 0.069   BTB (POZ) domain containing 9 isoform a 
KLHL25                0.065   BTB/POZ KELCH domain protein 
KLHL21                0.063   kelch-like 21 
KLHL17                0.063   kelch-like 17 
KLHL6                 0.061   kelch-like 6 
KLHL11                0.058   kelch-like 11 
KBTBD6                0.058   kelch repeat and BTB (POZ) domain-containing 6 [Homo...
KBTBD7                0.057   kelch repeat and BTB (POZ) domain containing 7 [Homo...
KLHL3                 0.056   kelch-like 3 
KLHL2                 0.056   kelch-like 2, Mayven isoform 2 
KLHL2                 0.056   kelch-like 2, Mayven isoform 1 
KLHL38                0.054   kelch-like 38 
ENC1                  0.054   ectodermal-neural cortex (with BTB-like domain) [Homo...
LZTR1                 0.053   leucine-zipper-like transcription regulator 1 
IBTK                  0.053   inhibitor of Bruton's tyrosine kinase 
KBTBD4                0.052   kelch repeat and BTB (POZ) domain containing 4 isof...
KBTBD4                0.052   kelch repeat and BTB (POZ) domain containing 4 isof...
ABTB2                 0.052   ankyrin repeat and BTB (POZ) domain containing 2 [Ho...
KBTBD8                0.050   T-cell activation kelch repeat protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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