Guide to the Human Genome
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Name: GDF6 Sequence: fasta or formatted (455aa) NCBI GI: 48475062
Description:

growth differentiation factor 6 precursor

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         38           2
 C cysteine            2.0          9           2
 D aspartate           4.8         22           2
 E glutamate           6.2         28           2
 F phenylalanine       3.5         16           2
 G glycine             7.7         35           1
 H histidine           2.2         10           1
 I isoleucine          2.9         13           2
 K lysine              3.7         17           2
 L leucine             9.7         44           3
 M methionine          2.0          9           1
 N asparagine          1.8          8           2
 P proline            10.5         48           4
 Q glutamine           5.3         24           2
 R arginine            9.2         42           5
 S serine              8.6         39           6
 T threonine           3.1         14           1
 V valine              4.4         20           2
 W tryptophan          2.2         10           1
 Y tyrosine            2.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth differentiation factor 6 precursor 
GDF5                  0.343   growth differentiation factor 5 preproprotein 
GDF7                  0.313   growth differentiation factor 7 preproprotein 
BMP4                  0.128   bone morphogenetic protein 4 preproprotein 
BMP4                  0.128   bone morphogenetic protein 4 preproprotein 
BMP4                  0.128   bone morphogenetic protein 4 preproprotein 
BMP10                 0.127   bone morphogenetic protein 10 preproprotein 
BMP5                  0.127   bone morphogenetic protein 5 preproprotein 
BMP2                  0.124   bone morphogenetic protein 2 preproprotein 
BMP7                  0.123   bone morphogenetic protein 7 precursor 
BMP8B                 0.122   bone morphogenetic protein 8B preproprotein 
BMP8A                 0.122   bone morphogenetic protein 8A 
GDF2                  0.117   growth differentiation factor 2 
BMP6                  0.116   bone morphogenetic protein 6 preproprotein 
NODAL                 0.107   nodal precursor 
BMP3                  0.098   bone morphogenetic protein 3 preproprotein 
BMP15                 0.096   bone morphogenetic protein 15 precursor 
GDF3                  0.095   growth differentiation factor 3 precursor 
GDF10                 0.092   growth differentiation factor 10 precursor 
GDF1                  0.091   growth differentiation factor 1 
INHBA                 0.085   inhibin beta A precursor 
INHBE                 0.074   activin beta E 
MSTN                  0.065   myostatin 
GDF11                 0.064   growth differentiation factor 11 precursor 
INHBB                 0.064   inhibin beta B subunit preproprotein 
GDF9                  0.063   growth differentiation factor 9 precursor 
INHBC                 0.059   inhibin beta C chain preproprotein 
TGFB3                 0.053   transforming growth factor, beta 3 
GDF15                 0.053   growth differentiation factor 15 
LOC100292463          0.053   PREDICTED: similar to growth differentiation factor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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