Guide to the Human Genome
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Name: BMP5 Sequence: fasta or formatted (454aa) NCBI GI: 10835091
Description:

bone morphogenetic protein 5 preproprotein

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         31           2
 C cysteine            2.0          9           2
 D aspartate           5.1         23           2
 E glutamate           5.1         23           2
 F phenylalanine       4.8         22           2
 G glycine             5.3         24           2
 H histidine           3.7         17           1
 I isoleucine          4.6         21           2
 K lysine              5.1         23           2
 L leucine             8.8         40           2
 M methionine          2.2         10           1
 N asparagine          6.4         29           2
 P proline             4.8         22           2
 Q glutamine           4.2         19           1
 R arginine            7.3         33           2
 S serine              8.4         38           3
 T threonine           4.4         20           2
 V valine              6.2         28           2
 W tryptophan          1.3          6           1
 Y tyrosine            3.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bone morphogenetic protein 5 preproprotein 
BMP7                  0.595   bone morphogenetic protein 7 precursor 
BMP6                  0.546   bone morphogenetic protein 6 preproprotein 
BMP8B                 0.416   bone morphogenetic protein 8B preproprotein 
BMP8A                 0.411   bone morphogenetic protein 8A 
BMP4                  0.168   bone morphogenetic protein 4 preproprotein 
BMP4                  0.168   bone morphogenetic protein 4 preproprotein 
BMP4                  0.168   bone morphogenetic protein 4 preproprotein 
BMP2                  0.166   bone morphogenetic protein 2 preproprotein 
GDF5                  0.137   growth differentiation factor 5 preproprotein 
GDF6                  0.129   growth differentiation factor 6 precursor 
BMP10                 0.127   bone morphogenetic protein 10 preproprotein 
GDF7                  0.119   growth differentiation factor 7 preproprotein 
GDF3                  0.111   growth differentiation factor 3 precursor 
GDF2                  0.110   growth differentiation factor 2 
GDF1                  0.103   growth differentiation factor 1 
BMP3                  0.101   bone morphogenetic protein 3 preproprotein 
GDF10                 0.092   growth differentiation factor 10 precursor 
BMP15                 0.087   bone morphogenetic protein 15 precursor 
INHBA                 0.085   inhibin beta A precursor 
NODAL                 0.083   nodal precursor 
GDF11                 0.076   growth differentiation factor 11 precursor 
MSTN                  0.075   myostatin 
TGFB2                 0.068   transforming growth factor, beta 2 isoform 1 
TGFB2                 0.068   transforming growth factor, beta 2 isoform 2 
INHBB                 0.067   inhibin beta B subunit preproprotein 
TGFB3                 0.066   transforming growth factor, beta 3 
INHBE                 0.066   activin beta E 
GDF9                  0.065   growth differentiation factor 9 precursor 
INHBC                 0.061   inhibin beta C chain preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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