Guide to the Human Genome
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Name: NODAL Sequence: fasta or formatted (347aa) NCBI GI: 222352098
Description:

nodal precursor

Referenced in:

Ring Finger Proteins
TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         25           2
 C cysteine            2.9         10           2
 D aspartate           4.3         15           1
 E glutamate           6.1         21           2
 F phenylalanine       3.5         12           1
 G glycine             4.9         17           2
 H histidine           3.7         13           2
 I isoleucine          2.6          9           2
 K lysine              3.5         12           1
 L leucine            13.0         45           2
 M methionine          2.3          8           1
 N asparagine          2.3          8           1
 P proline             7.5         26           2
 Q glutamine           6.3         22           2
 R arginine            6.1         21           2
 S serine              8.1         28           2
 T threonine           4.6         16           1
 V valine              5.2         18           1
 W tryptophan          3.5         12           2
 Y tyrosine            2.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nodal precursor 
GDF6                  0.139   growth differentiation factor 6 precursor 
GDF2                  0.124   growth differentiation factor 2 
GDF7                  0.115   growth differentiation factor 7 preproprotein 
BMP8B                 0.115   bone morphogenetic protein 8B preproprotein 
BMP4                  0.112   bone morphogenetic protein 4 preproprotein 
BMP4                  0.112   bone morphogenetic protein 4 preproprotein 
BMP4                  0.112   bone morphogenetic protein 4 preproprotein 
BMP8A                 0.112   bone morphogenetic protein 8A 
BMP2                  0.111   bone morphogenetic protein 2 preproprotein 
GDF5                  0.111   growth differentiation factor 5 preproprotein 
BMP7                  0.109   bone morphogenetic protein 7 precursor 
BMP6                  0.107   bone morphogenetic protein 6 preproprotein 
BMP5                  0.107   bone morphogenetic protein 5 preproprotein 
BMP10                 0.102   bone morphogenetic protein 10 preproprotein 
GDF3                  0.099   growth differentiation factor 3 precursor 
INHBA                 0.087   inhibin beta A precursor 
BMP3                  0.087   bone morphogenetic protein 3 preproprotein 
GDF10                 0.084   growth differentiation factor 10 precursor 
GDF1                  0.081   growth differentiation factor 1 
INHBE                 0.080   activin beta E 
BMP15                 0.078   bone morphogenetic protein 15 precursor 
GDF9                  0.075   growth differentiation factor 9 precursor 
INHBB                 0.068   inhibin beta B subunit preproprotein 
INHBC                 0.062   inhibin beta C chain preproprotein 
GDF15                 0.060   growth differentiation factor 15 
LOC100292463          0.060   PREDICTED: similar to growth differentiation factor...
GDF11                 0.057   growth differentiation factor 11 precursor 
MSTN                  0.055   myostatin 
TGFB2                 0.043   transforming growth factor, beta 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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