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Search of human proteins with 47777319
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47777319 hypothetical protein LOC55181 [Homo sapiens]
(991 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47777319 hypothetical protein LOC55181 [Homo sapiens] 2045 0.0
gi|188536004 zinc finger protein 469 [Homo sapiens] 49 2e-05
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 35 0.27
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 35 0.27
gi|73476377 LBXCOR1 homolog [Homo sapiens] 35 0.35
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 35 0.35
gi|42518068 trans-golgi network protein 2 [Homo sapiens] 35 0.46
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 35 0.46
gi|4557857 somatostatin receptor 1 [Homo sapiens] 34 0.59
gi|119395750 keratin 1 [Homo sapiens] 34 0.78
gi|148596957 myosin binding protein C, cardiac [Homo sapiens] 34 0.78
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 34 0.78
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 34 0.78
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 34 0.78
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 33 1.0
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 33 1.0
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 33 1.3
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 33 1.3
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 33 1.3
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 33 1.3
gi|239757272 PREDICTED: hypothetical protein [Homo sapiens] 33 1.3
gi|239751775 PREDICTED: hypothetical protein [Homo sapiens] 33 1.3
gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo ... 33 1.3
gi|84570137 homeobox B3 [Homo sapiens] 33 1.7
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 33 1.7
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 32 2.3
gi|46370086 transcription factor 12 isoform c [Homo sapiens] 32 2.3
gi|46370084 transcription factor 12 isoform b [Homo sapiens] 32 2.3
gi|4507391 transcription factor 12 isoform b [Homo sapiens] 32 2.3
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 32 2.3
>gi|47777319 hypothetical protein LOC55181 [Homo sapiens]
Length = 991
Score = 2045 bits (5298), Expect = 0.0
Identities = 991/991 (100%), Positives = 991/991 (100%)
Query: 1 MAGPVSLRDLLMGASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRL 60
MAGPVSLRDLLMGASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRL
Sbjct: 1 MAGPVSLRDLLMGASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRL 60
Query: 61 NSEKFSLVNTVCDRQVFPLFRHQDPGDPGPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSG 120
NSEKFSLVNTVCDRQVFPLFRHQDPGDPGPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSG
Sbjct: 61 NSEKFSLVNTVCDRQVFPLFRHQDPGDPGPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSG 120
Query: 121 AVAEGNRTEAGSQDYSLLQAYYSQESKVLYLLLTSICDNSQLLRACRALQSGEAGGGLSL 180
AVAEGNRTEAGSQDYSLLQAYYSQESKVLYLLLTSICDNSQLLRACRALQSGEAGGGLSL
Sbjct: 121 AVAEGNRTEAGSQDYSLLQAYYSQESKVLYLLLTSICDNSQLLRACRALQSGEAGGGLSL 180
Query: 181 PHAEAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPL 240
PHAEAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPL
Sbjct: 181 PHAEAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPL 240
Query: 241 LKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRNQDPAHPDKPKKHSPKRRL 300
LKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRNQDPAHPDKPKKHSPKRRL
Sbjct: 241 LKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRNQDPAHPDKPKKHSPKRRL 300
Query: 301 QHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVGMLLDQLRSHCT 360
QHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVGMLLDQLRSHCT
Sbjct: 301 QHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVGMLLDQLRSHCT 360
Query: 361 VKDPESLLVPAPLSGPRRYQVMRQHSRQQLSFHIDSSSSSSSGQLVDFTLREFLWQHVEL 420
VKDPESLLVPAPLSGPRRYQVMRQHSRQQLSFHIDSSSSSSSGQLVDFTLREFLWQHVEL
Sbjct: 361 VKDPESLLVPAPLSGPRRYQVMRQHSRQQLSFHIDSSSSSSSGQLVDFTLREFLWQHVEL 420
Query: 421 VLSKKGFDDSVGRNPQPSHFELPTYQKWISAASKLYEVAIDGKEEDLGSPTGELTSKILS 480
VLSKKGFDDSVGRNPQPSHFELPTYQKWISAASKLYEVAIDGKEEDLGSPTGELTSKILS
Sbjct: 421 VLSKKGFDDSVGRNPQPSHFELPTYQKWISAASKLYEVAIDGKEEDLGSPTGELTSKILS 480
Query: 481 SIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHAR 540
SIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHAR
Sbjct: 481 SIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHAR 540
Query: 541 GPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLY 600
GPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLY
Sbjct: 541 GPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLY 600
Query: 601 HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDP 660
HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDP
Sbjct: 601 HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDP 660
Query: 661 APAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQAGGDNP 720
APAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQAGGDNP
Sbjct: 661 APAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQAGGDNP 720
Query: 721 EVHGQVEVKTEKRPNFVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFH 780
EVHGQVEVKTEKRPNFVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFH
Sbjct: 721 EVHGQVEVKTEKRPNFVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFH 780
Query: 781 TGLDQQGFIPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRD 840
TGLDQQGFIPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRD
Sbjct: 781 TGLDQQGFIPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRD 840
Query: 841 DIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGL 900
DIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGL
Sbjct: 841 DIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGL 900
Query: 901 KPHYAQLMRLFVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAY 960
KPHYAQLMRLFVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAY
Sbjct: 901 KPHYAQLMRLFVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAY 960
Query: 961 VTERGPCFPPKENVQLMSYKVLRGVLKAVTQ 991
VTERGPCFPPKENVQLMSYKVLRGVLKAVTQ
Sbjct: 961 VTERGPCFPPKENVQLMSYKVLRGVLKAVTQ 991
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 48.9 bits (115), Expect = 2e-05
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 4 PVSLRDLLMGASAWMGSESPGGSPTEGGGSAAG--GPEPPWREDEICVVGIFGKT-ALRL 60
P ++ +L M +AW G E P +P + S+ G PEPP E E C G+ G T L L
Sbjct: 2956 PEAIPELHMVPAAWRGLEMP--APADDSSSSLGDVSPEPPSLERERCDGGLPGNTHLLPL 3013
Query: 61 NSEKFSLVNTVCDRQ-VFPLFRHQDP-GDPGPGIRTEAGAVGEAG--GAEDPGAAAGGSV 116
+ F +++T + Q + L +DP G PGP G G AA G
Sbjct: 3014 RATDFEVLSTKFEMQDLCFLGPFEDPVGLPGPSFLDFEGTASSQGPQSRRTEEAAGAGRA 3073
Query: 117 RGSGAVAEGNR 127
+G G A+G R
Sbjct: 3074 QGRGRPAKGRR 3084
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 35.4 bits (80), Expect = 0.27
Identities = 37/127 (29%), Positives = 44/127 (34%), Gaps = 14/127 (11%)
Query: 13 GASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVC 72
G G GSP G G P PP + V G G+ L +
Sbjct: 514 GEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQG---VPGPKGEAGLDGAKGEKGFQGEKG 570
Query: 73 DRQVFPLFRHQDPGDPGP-GIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAV-----AEGN 126
DR L PG PGP G+ AG GE G DPG G + +GN
Sbjct: 571 DRGPLGL-----PGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGN 625
Query: 127 RTEAGSQ 133
R E G +
Sbjct: 626 RGERGKK 632
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 35.4 bits (80), Expect = 0.27
Identities = 37/127 (29%), Positives = 44/127 (34%), Gaps = 14/127 (11%)
Query: 13 GASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVC 72
G G GSP G G P PP + V G G+ L +
Sbjct: 536 GEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQG---VPGPKGEAGLDGAKGEKGFQGEKG 592
Query: 73 DRQVFPLFRHQDPGDPGP-GIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAV-----AEGN 126
DR L PG PGP G+ AG GE G DPG G + +GN
Sbjct: 593 DRGPLGL-----PGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGN 647
Query: 127 RTEAGSQ 133
R E G +
Sbjct: 648 RGERGKK 654
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 35.0 bits (79), Expect = 0.35
Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 29/163 (17%)
Query: 3 GPVSLRDLLMGASAWMGSESPGGS-PTEGGGSAAGGPEPPWREDEICVVGIFGKTALRLN 61
GP + L G G P P G G A G P G+ + +
Sbjct: 275 GPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVP 334
Query: 62 SEKFSLVNTVCDRQVFPLFRH--------------QDP----GDP--GPGIRTEAGAVGE 101
S+ F L+ + PLF H DP G+P GPG + G G
Sbjct: 335 SKGFGLLQKLPP----PLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGT 390
Query: 102 AGGAEDPGAA----AGGSVRGSGAVAEGNRTEAGSQDYSLLQA 140
GGA PGA+ G+ G GA+ G++ ++D + + A
Sbjct: 391 GGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAA 433
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 35.0 bits (79), Expect = 0.35
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 72 CDRQVFPLFRHQDPGDPG-PGIRTEAGAVGEAGGAEDPGAAAGGSV--RGSGAVA--EGN 126
C+R++ + DPGDPG PG G GE G +PG A G RG G + +G+
Sbjct: 235 CERKICECEKG-DPGDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGGIPGYKGD 293
Query: 127 RTEAG 131
+ E G
Sbjct: 294 KGERG 298
>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
Length = 437
Score = 34.7 bits (78), Expect = 0.46
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 50/213 (23%)
Query: 654 EPSTPDPAPAKNESSPAPPD-------------SDADKLKEKEPQTQGESTSL--SLALS 698
EP TP +P+K+ + P+ D+ E +TQ STS S A +
Sbjct: 59 EPQTPKDSPSKSSAEAQTPEDTPNKSGAEAKTQKDSSNKSGAEAKTQKGSTSKSGSEAQT 118
Query: 699 LGQST-----------DSLGTYPADPQAGGDNPEVHGQVEVKTEK-RPNFVDRQASTVEY 746
ST DS G A+ Q D+P G E KT+K P+ +A T +
Sbjct: 119 TKDSTSKSHPELQTPKDSTGKSGAEAQTPEDSPNRSG-AEAKTQKDSPSKSGSEAQTTKD 177
Query: 747 LPGMLHSNCPKGLLPK-FSSWSLVKLGPAKSYNFHTGLDQQGFIPGTNYLMPWDIVIRTR 805
+P + + G PK SS S + K +G ++Q G+N ++
Sbjct: 178 VP---NKSGADGQTPKDGSSKSGAEDQTPKDVPNKSGAEKQTPKDGSN---------KSG 225
Query: 806 AEDEGDLD---------TNSWPAPNKAIPGKRS 829
AE++G +D S +PNK +P + S
Sbjct: 226 AEEQGPIDGPSKSGAEEQTSKDSPNKVVPEQPS 258
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 34.7 bits (78), Expect = 0.46
Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 14/125 (11%)
Query: 13 GASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVC 72
G G GSP G G P PP + V G G+ L +
Sbjct: 485 GEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQG---VPGPKGEAGLDGAKGEKGFQGEKG 541
Query: 73 DRQVFPLFRHQDPGDPGP-GIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAV-----AEGN 126
DR L PG PGP G+ AG GE G DPG G + +GN
Sbjct: 542 DRGPLGL-----PGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGN 596
Query: 127 RTEAG 131
R E G
Sbjct: 597 RGEDG 601
>gi|4557857 somatostatin receptor 1 [Homo sapiens]
Length = 391
Score = 34.3 bits (77), Expect = 0.59
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 79 LFRHQDPGDPGPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTEAGSQDYSLL 138
+F + P G+ GE GG+ PGA A + G A N T + Q ++L
Sbjct: 1 MFPNGTASSPSSSPSPSPGSCGEGGGSRGPGAGAADGMEEPGRNASQNGTLSEGQGSAIL 60
Query: 139 QAY-YSQESKVLYLLLTSICDNSQLL 163
++ YS + L +C NS ++
Sbjct: 61 ISFIYS------VVCLVGLCGNSMVI 80
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 33.9 bits (76), Expect = 0.78
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 97 GAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTEAGSQDYSLLQAYYS 143
G G +GG G ++GGS+ G G+ + G ++ GS + YS
Sbjct: 594 GGGGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSGGSSSVKFVSTTYS 640
>gi|148596957 myosin binding protein C, cardiac [Homo sapiens]
Length = 1274
Score = 33.9 bits (76), Expect = 0.78
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 658 PDPAPAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQAG 716
P PAPA+ +P + A +L E P +G S++ + G D +G + PQ G
Sbjct: 106 PAPAPAEATGAPGEAPAPAAELGESAPSPKGSSSAALNGPTPGAPDDPIGLFVMRPQDG 164
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 33.9 bits (76), Expect = 0.78
Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 11 LMGASAWMGSESPGGSPTEGGGSAAGGP-EPPWREDEICVVGIFGKTALRLNSEKFSLVN 69
L G G P GSP E G + +GGP PP R G G+ + EK +
Sbjct: 915 LKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG--VPGEKGPIGP 972
Query: 70 TVCDRQVFPLFRHQDPGDPG-PGIRTEAGAVGEAGGAEDPG 109
T D P+ PG G PG+ E G GE G DPG
Sbjct: 973 TGRDGVQGPVGL---PGPAGPPGVAGEDGDKGEVG---DPG 1007
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 33.9 bits (76), Expect = 0.78
Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 11 LMGASAWMGSESPGGSPTEGGGSAAGGP-EPPWREDEICVVGIFGKTALRLNSEKFSLVN 69
L G G P GSP E G + +GGP PP R G G+ + EK +
Sbjct: 894 LKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG--VPGEKGPIGP 951
Query: 70 TVCDRQVFPLFRHQDPGDPG-PGIRTEAGAVGEAGGAEDPG 109
T D P+ PG G PG+ E G GE G DPG
Sbjct: 952 TGRDGVQGPVGL---PGPAGPPGVAGEDGDKGEVG---DPG 986
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 33.9 bits (76), Expect = 0.78
Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 11 LMGASAWMGSESPGGSPTEGGGSAAGGP-EPPWREDEICVVGIFGKTALRLNSEKFSLVN 69
L G G P GSP E G + +GGP PP R G G+ + EK +
Sbjct: 1001 LKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG--VPGEKGPIGP 1058
Query: 70 TVCDRQVFPLFRHQDPGDPG-PGIRTEAGAVGEAGGAEDPG 109
T D P+ PG G PG+ E G GE G DPG
Sbjct: 1059 TGRDGVQGPVGL---PGPAGPPGVAGEDGDKGEVG---DPG 1093
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 33.5 bits (75), Expect = 1.0
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 34/205 (16%)
Query: 654 EPSTPDPAPAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADP 713
E P P P + +PAP + ADK P+ G S A +S D
Sbjct: 10 EQPQPPPPPPEEPGAPAPSPAAADKRPRGRPRKDGAS-PFQRARKKPRSRGKTAVEDEDS 68
Query: 714 QAGGDNPEVHGQVEVKTEKRPNFVDRQA---STVEYLPGMLHSNCPKGLLPKFSSWSLVK 770
G + E VE + +++ D +A ++ + +P + S + + S+ SLV
Sbjct: 69 MDGLETTETETIVETEIKEQSAEEDAEAEVDNSKQLIPTLQRS------VSEESANSLVS 122
Query: 771 LG---------------PAKSYNFHTGLDQQGFIPGTNYLMPWDIVIRTRAEDEGDLDTN 815
+G KS L Q PG +++PW R + ++ D+D N
Sbjct: 123 VGVEAKISEQLCAFCYCGEKSSLGQGDLKQFRITPG--FILPW----RNQPSNKKDIDDN 176
Query: 816 SWPAPNKAIPGKRSAVVMGRGRRRD 840
S K + SA RG+R++
Sbjct: 177 SNGTYEKM---QNSAPRKQRGQRKE 198
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 33.5 bits (75), Expect = 1.0
Identities = 38/134 (28%), Positives = 45/134 (33%), Gaps = 16/134 (11%)
Query: 13 GASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVC 72
G G GSP G G P PP + V G G+ L +
Sbjct: 536 GEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQG---VPGPKGEAGLDGAKGEKGFQGEKG 592
Query: 73 DRQVFPL-------FRHQDPGDPGP-GIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAV-- 122
DR L R PG PGP G+ AG GE G DPG G +
Sbjct: 593 DRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHG 652
Query: 123 ---AEGNRTEAGSQ 133
+GNR E G +
Sbjct: 653 PPGDKGNRGERGKK 666
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 33.1 bits (74), Expect = 1.3
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 84 DPGDPGP-GIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTEAGSQ 133
DPG PGP G EAG G G PGAA +G +G + EAG++
Sbjct: 1352 DPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE----KGAKGEAGAE 1398
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 33.1 bits (74), Expect = 1.3
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 84 DPGDPGP-GIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTEAGSQ 133
DPG PGP G EAG G G PGAA +G +G + EAG++
Sbjct: 1301 DPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE----KGAKGEAGAE 1347
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 33.1 bits (74), Expect = 1.3
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 84 DPGDPGP-GIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTEAGSQ 133
DPG PGP G EAG G G PGAA +G +G + EAG++
Sbjct: 1340 DPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE----KGAKGEAGAE 1386
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.1 bits (74), Expect = 1.3
Identities = 40/134 (29%), Positives = 47/134 (35%), Gaps = 30/134 (22%)
Query: 11 LMGASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALR-LNSEKFSLVN 69
L GA G P G EGG AAG P PP G G L+ + E+ L +
Sbjct: 688 LAGAPGLRGGAGPPGP--EGGKGAAGPPGPP---------GAAGTPGLQGMPGERGGLGS 736
Query: 70 TVCDRQVFPLFRHQDPGDPG-------PGIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAV 122
P +PG PG G R G +G G A PG G G +
Sbjct: 737 P------GPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGI 790
Query: 123 A-----EGNRTEAG 131
A G R E G
Sbjct: 791 AGPRGSPGERGETG 804
Score = 30.8 bits (68), Expect = 6.6
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 85 PGDPG----PGIRTEAGAVGEAGGAEDPGAAA--GGSVRGSGAVAEGNRTEAGS 132
PG PG PG + E GA GE G PG A GGS +G + E GS
Sbjct: 812 PGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGS 865
Score = 30.4 bits (67), Expect = 8.6
Identities = 38/131 (29%), Positives = 46/131 (35%), Gaps = 30/131 (22%)
Query: 11 LMGASAWMGSESPGGSPTEGGGSAAGGPE-PPWREDEICVVGIFGKTALRLNSEKFSLVN 69
+MG G++ G E GG GP+ PP + E G G T
Sbjct: 577 VMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG------------ 624
Query: 70 TVCDRQVFPLFRHQDPGDPGP----GIRTEAGAVGEAGGAEDPG----AAAGGSVRGSG- 120
P D G PGP G+ G GE G +PG A A G+ G G
Sbjct: 625 --------PGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGD 676
Query: 121 AVAEGNRTEAG 131
A A G R G
Sbjct: 677 AGAPGERGPPG 687
Score = 30.4 bits (67), Expect = 8.6
Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 31/127 (24%)
Query: 19 GSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVCDRQVFP 78
G P G+P G A GP+ P R D+ G+T R + + + FP
Sbjct: 1068 GPAGPAGAPGPAGSRGAPGPQGP-RGDK-------GETGERGAA-------GIKGHRGFP 1112
Query: 79 LFRHQDPGDPG-PGIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVA-----------EGN 126
+PG PG PG + GA+G G A G G + GN
Sbjct: 1113 ----GNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGN 1168
Query: 127 RTEAGSQ 133
R E GS+
Sbjct: 1169 RGERGSE 1175
>gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 33.1 bits (74), Expect = 1.3
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 89 GPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTE 129
GPG R AGA GGAE A++GG + G G R E
Sbjct: 176 GPGSRVPAGA---GGGAETAAASSGGGITGEGRSKVRGRVE 213
>gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 33.1 bits (74), Expect = 1.3
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 89 GPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTE 129
GPG R AGA GGAE A++GG + G G R E
Sbjct: 176 GPGSRVPAGA---GGGAETAAASSGGGITGEGRSKVRGRVE 213
>gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo
sapiens]
Length = 314
Score = 33.1 bits (74), Expect = 1.3
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 89 GPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTE 129
GPG R AGA GGAE A++GG + G G R E
Sbjct: 176 GPGSRVPAGA---GGGAETAAASSGGGITGEGRSKVRGRVE 213
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 32.7 bits (73), Expect = 1.7
Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 24/122 (19%)
Query: 15 SAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVCDR 74
SA GS P +PT +++ G P C G N+ +
Sbjct: 84 SAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPG----------------TNSTLTK 127
Query: 75 QVFPLFRHQDPGDP----GPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTEA 130
Q+FP + PG G G GG G +GGS G G G+++
Sbjct: 128 QIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGG----GGGSGGSGGGGGGGGGGDKSPP 183
Query: 131 GS 132
GS
Sbjct: 184 GS 185
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 32.7 bits (73), Expect = 1.7
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 644 KLDHINFPVFEPSTPDPAPAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLGQST 703
K + + P P PAP + +S P P +A+K E T + S L
Sbjct: 1052 KTEKKDLPPPPPPPQPPAPIQPQSVPPPIQPEAEKFPSTETATLAQKPSQDTEKPL---- 1107
Query: 704 DSLGTYPADPQAGGDNPEVHGQVEVKTEKRPNFVDRQASTVE 745
+ + T +P N + VK EK+P V + +E
Sbjct: 1108 EPVSTVQVEPAVKTVNQQTMAAPVVKEEKQPEKVISKDLVIE 1149
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 32.3 bits (72), Expect = 2.3
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 81 RHQDPGDPGPGIRTEAGAVGEAGGAEDPGAAAG---GSVRGSGAVAEGNRTEAGSQDYS 136
R ++ G + EAGA EAG + GA AG G+ G+GA A G TE+G+ +S
Sbjct: 1888 RSEEVAYMGSCVGAEAGAGAEAGAGAEAGAGAGAEAGAEAGAGAGA-GPGTESGAGVWS 1945
>gi|46370086 transcription factor 12 isoform c [Homo sapiens]
Length = 512
Score = 32.3 bits (72), Expect = 2.3
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 288 PDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDP 347
P P + LQ +ED++ R+ VL N ++ ++PA + ++ + G P
Sbjct: 214 PSSPSYENSLHSLQSRMEDRLDRLDDAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAP 273
Query: 348 VGML 351
+G L
Sbjct: 274 IGSL 277
>gi|46370084 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 32.3 bits (72), Expect = 2.3
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 288 PDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDP 347
P P + LQ +ED++ R+ VL N ++ ++PA + ++ + G P
Sbjct: 384 PSSPSYENSLHSLQSRMEDRLDRLDDAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAP 443
Query: 348 VGML 351
+G L
Sbjct: 444 IGSL 447
>gi|4507391 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 32.3 bits (72), Expect = 2.3
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 288 PDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDP 347
P P + LQ +ED++ R+ VL N ++ ++PA + ++ + G P
Sbjct: 384 PSSPSYENSLHSLQSRMEDRLDRLDDAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAP 443
Query: 348 VGML 351
+G L
Sbjct: 444 IGSL 447
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 32.3 bits (72), Expect = 2.3
Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 20/127 (15%)
Query: 655 PSTPDPAPAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQ 714
P TP PAP E P+P + K + P L L + +GQ + +P+
Sbjct: 678 PPTPTPAPCPTEPPPSPLICFSLKTPDSPPTP--APLLLDLGIPVGQRSAKSPRREEEPR 735
Query: 715 AGGDNPEVHGQVEVKTEKRPNFVDRQASTVEYLP-----GMLHSNCPKGLLPKFSSWSLV 769
G +P P R A P G++ P L + WS V
Sbjct: 736 GGTVSP-------------PPGTSRSAPGTPGTPRSPPLGLISRPRPSPLRSRIDPWSFV 782
Query: 770 KLGPAKS 776
GP S
Sbjct: 783 SAGPRPS 789
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,838,368
Number of Sequences: 37866
Number of extensions: 2454430
Number of successful extensions: 12517
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 11983
Number of HSP's gapped (non-prelim): 696
length of query: 991
length of database: 18,247,518
effective HSP length: 112
effective length of query: 879
effective length of database: 14,006,526
effective search space: 12311736354
effective search space used: 12311736354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.