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Search of human proteins with 4758430
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A
[Homo sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Hom... 607 e-174
gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo... 607 e-174
gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Hom... 501 e-142
gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens] 49 7e-06
gi|209571584 farnesyl diphosphate synthase isoform b [Homo sapiens] 45 1e-04
gi|209571582 farnesyl diphosphate synthase isoform a [Homo sapiens] 45 1e-04
gi|4503685 farnesyl diphosphate synthase isoform a [Homo sapiens] 45 1e-04
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 30 3.4
gi|94818891 type 1 tumor necrosis factor receptor shedding amino... 29 4.4
gi|94818901 type 1 tumor necrosis factor receptor shedding amino... 29 4.4
gi|188528663 solute carrier organic anion transporter family, me... 29 4.4
gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens] 29 4.4
gi|11141903 FAST kinase domains 5 [Homo sapiens] 29 4.4
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 29 4.4
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 29 4.4
gi|221307575 Rho-type GTPase-activating protein FLJ32810 [Homo s... 29 5.8
gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens] 29 5.8
gi|27437049 colony stimulating factor 3 isoform b precursor [Hom... 29 5.8
gi|4503079 colony stimulating factor 3 isoform a precursor [Homo... 29 5.8
gi|46877066 plasticity related gene 3 [Homo sapiens] 29 5.8
gi|46877064 plasticity related gene 3 [Homo sapiens] 29 5.8
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 28 7.6
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 28 7.6
gi|38570149 WWC family member 3 [Homo sapiens] 28 7.6
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 28 9.9
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 28 9.9
>gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Homo
sapiens]
Length = 300
Score = 607 bits (1566), Expect = e-174
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS 60
MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS
Sbjct: 1 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS 60
Query: 61 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL 120
LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL
Sbjct: 61 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL 120
Query: 121 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL 180
ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL
Sbjct: 121 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL 180
Query: 181 GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN 240
GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN
Sbjct: 181 GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN 240
Query: 241 IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE 300
IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
Sbjct: 241 IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE 300
>gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo
sapiens]
Length = 300
Score = 607 bits (1566), Expect = e-174
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS 60
MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS
Sbjct: 1 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS 60
Query: 61 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL 120
LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL
Sbjct: 61 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL 120
Query: 121 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL 180
ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL
Sbjct: 121 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL 180
Query: 181 GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN 240
GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN
Sbjct: 181 GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN 240
Query: 241 IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE 300
IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
Sbjct: 241 IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE 300
>gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Homo
sapiens]
Length = 246
Score = 501 bits (1291), Expect = e-142
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 55 MLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKL 114
MLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKL
Sbjct: 1 MLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKL 60
Query: 115 FTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLK 174
FTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLK
Sbjct: 61 FTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLK 120
Query: 175 PLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNIL 234
PLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNIL
Sbjct: 121 PLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNIL 180
Query: 235 RQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKM 294
RQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKM
Sbjct: 181 RQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKM 240
Query: 295 FKEENE 300
FKEENE
Sbjct: 241 FKEENE 246
>gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens]
Length = 415
Score = 48.5 bits (114), Expect = 7e-06
Identities = 49/242 (20%), Positives = 103/242 (42%), Gaps = 8/242 (3%)
Query: 52 VTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDA 111
+ EM+H ASL+ DD+ D++ RRG + I+G + + + + + + +
Sbjct: 168 IAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTV 227
Query: 112 VKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE 171
+ + T+ + +L +G+ L + ++N Y +KT L + + +
Sbjct: 228 ISILTQVIEDLVRGEFLQLGSKENEN-ERFAHYLEKTFKKTASLIANSCKAVSVLGCPDP 286
Query: 172 DLKPLL----NTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPES 227
+ + +G+ FQ+ DD + S K DL G + P + A PE
Sbjct: 287 VVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEM 346
Query: 228 TQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVAL 287
+ I+R+ + D+ + + L+ G + T ++ +A ++I +PE AL
Sbjct: 347 NAM--IMRRFSLPGDVDRARQYVLQSDG-VQQTTYLAQQYCHEAIREISKLRPSPERDAL 403
Query: 288 VK 289
++
Sbjct: 404 IQ 405
>gi|209571584 farnesyl diphosphate synthase isoform b [Homo sapiens]
Length = 353
Score = 44.7 bits (104), Expect = 1e-04
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 30/229 (13%)
Query: 54 EMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVY--FLGLEKVLTLDHP- 109
E+L L+ DDI D+S RRG + G+ IN AN + L K+ + P
Sbjct: 93 ELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPY 152
Query: 110 --DAVKLFTRQLLELHQGQGLDIYWRDNYTCP----TEEEYKAMVLQKTGGL---FGLAV 160
+ ++LF + + GQ LD+ TE+ YK++V KT +A
Sbjct: 153 YLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAA 212
Query: 161 GLMQLFSDYKED---LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 217
+ D +++ K +L +G FFQI+DDY +L + S D+ + K S+
Sbjct: 213 AMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFG-DPSVTGKIGTDIQDNKCSWLV 271
Query: 218 IHAIW-SRPESTQV----------QNILRQRT--ENIDIKKYCVHYLED 253
+ + + PE Q+ + + R + E +D+ + Y ED
Sbjct: 272 VQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEED 320
>gi|209571582 farnesyl diphosphate synthase isoform a [Homo sapiens]
Length = 419
Score = 44.7 bits (104), Expect = 1e-04
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 30/229 (13%)
Query: 54 EMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVY--FLGLEKVLTLDHP- 109
E+L L+ DDI D+S RRG + G+ IN AN + L K+ + P
Sbjct: 159 ELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPY 218
Query: 110 --DAVKLFTRQLLELHQGQGLDIYWRDNYTCP----TEEEYKAMVLQKTGGL---FGLAV 160
+ ++LF + + GQ LD+ TE+ YK++V KT +A
Sbjct: 219 YLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAA 278
Query: 161 GLMQLFSDYKED---LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 217
+ D +++ K +L +G FFQI+DDY +L + S D+ + K S+
Sbjct: 279 AMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFG-DPSVTGKIGTDIQDNKCSWLV 337
Query: 218 IHAIW-SRPESTQV----------QNILRQRT--ENIDIKKYCVHYLED 253
+ + + PE Q+ + + R + E +D+ + Y ED
Sbjct: 338 VQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEED 386
>gi|4503685 farnesyl diphosphate synthase isoform a [Homo sapiens]
Length = 419
Score = 44.7 bits (104), Expect = 1e-04
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 30/229 (13%)
Query: 54 EMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVY--FLGLEKVLTLDHP- 109
E+L L+ DDI D+S RRG + G+ IN AN + L K+ + P
Sbjct: 159 ELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPY 218
Query: 110 --DAVKLFTRQLLELHQGQGLDIYWRDNYTCP----TEEEYKAMVLQKTGGL---FGLAV 160
+ ++LF + + GQ LD+ TE+ YK++V KT +A
Sbjct: 219 YLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAA 278
Query: 161 GLMQLFSDYKED---LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 217
+ D +++ K +L +G FFQI+DDY +L + S D+ + K S+
Sbjct: 279 AMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFG-DPSVTGKIGTDIQDNKCSWLV 337
Query: 218 IHAIW-SRPESTQV----------QNILRQRT--ENIDIKKYCVHYLED 253
+ + + PE Q+ + + R + E +D+ + Y ED
Sbjct: 338 VQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEED 386
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 29.6 bits (65), Expect = 3.4
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 158 LAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLT-------- 209
L + L++L ++Y+ + L ++ D NL +KE N+S E T
Sbjct: 441 LQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEEL 500
Query: 210 EGKFSFPTIHAIWSRPESTQVQN----ILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLK 265
+ + T H I + + ++ QN I+ + ++++ +K VH LED + K
Sbjct: 501 DRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLED-----DKMDITK 555
Query: 266 ELEAKAYKQIDARGGNPELVALVKHLSKMFKEE 298
EL+ + K I + +L HL+K E+
Sbjct: 556 ELDVQKEKLIQSEVALNDL-----HLTKQKLED 583
>gi|94818891 type 1 tumor necrosis factor receptor shedding
aminopeptidase regulator isoform b [Homo sapiens]
Length = 941
Score = 29.3 bits (64), Expect = 4.4
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 43 EDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANY 94
ED + ++++ L + +I D E SK+ + V S+Y +P IN A+Y
Sbjct: 233 EDHFDVTVKMSTYL--VAFIISDFESVSKITKS-GVKVSVYAVPDKINQADY 281
>gi|94818901 type 1 tumor necrosis factor receptor shedding
aminopeptidase regulator isoform a [Homo sapiens]
Length = 948
Score = 29.3 bits (64), Expect = 4.4
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 43 EDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANY 94
ED + ++++ L + +I D E SK+ + V S+Y +P IN A+Y
Sbjct: 233 EDHFDVTVKMSTYL--VAFIISDFESVSKITKS-GVKVSVYAVPDKINQADY 281
>gi|188528663 solute carrier organic anion transporter family,
member 2A1 [Homo sapiens]
Length = 643
Score = 29.3 bits (64), Expect = 4.4
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 7 TVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDK 45
T+ L EPY+Y L G R + HW +P K
Sbjct: 116 TLPHFLSEPYQYTLASTGNNSRLQAELCQKHWQDLPPSK 154
>gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens]
Length = 4557
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 12 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDK-----LQIIIEVTEMLHNASLL---- 62
L EP KY + PG + + K + VP D+ ++++E + L + +
Sbjct: 2011 LNEPLKYSILNPGNKFKIKSTSGVIQTTGVPFDREEQELYELVVEASRELDHLRVARVVV 2070
Query: 63 ---IDDIEDNSKLRRGFP 77
I+DI DNS + G P
Sbjct: 2071 RVNIEDINDNSPVFVGLP 2088
>gi|11141903 FAST kinase domains 5 [Homo sapiens]
Length = 764
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 183 FFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENID 242
F I Y NLH K+ S ++ +H I+ E+ QV L Q+ E++
Sbjct: 261 FLNIFSSYLNLHWKDLSLSQ--------------LVHLIYVIGENRQVSQDLMQKLESLI 306
Query: 243 IKKYCVHYLEDVGS 256
+K + LE+VG+
Sbjct: 307 LKYIDLINLEEVGT 320
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 29.3 bits (64), Expect = 4.4
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 41/158 (25%)
Query: 12 LLEPYKYLLQLPGKQVRTKLSQ--AFNHWLK---VPEDKLQIIIEVTEMLHNASLLIDDI 66
L + K L K+ +KLS+ +FN+ LK + + LQ ++ + L+N LL+ ++
Sbjct: 591 LCQRLKEQLDALEKETASKLSEMDSFNNQLKCGNMDDSVLQCLLSLLSCLNNLFLLLKEL 650
Query: 67 EDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQG- 125
+ ++ L LE++ + D +K R+ LEL Q
Sbjct: 651 RETYNTQQ-----------------------LALEQLYKIKR-DKLKEIERKRLELMQKK 686
Query: 126 -----------QGLDIYWRDNYTCPTEEEYKAMVLQKT 152
QG + W++N EE+ K + +KT
Sbjct: 687 KLEDEAARKAKQGKENLWKENLRKEEEEKQKRLQEEKT 724
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 29.3 bits (64), Expect = 4.4
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 41/158 (25%)
Query: 12 LLEPYKYLLQLPGKQVRTKLSQ--AFNHWLK---VPEDKLQIIIEVTEMLHNASLLIDDI 66
L + K L K+ +KLS+ +FN+ LK + + LQ ++ + L+N LL+ ++
Sbjct: 591 LCQRLKEQLDALEKETASKLSEMDSFNNQLKCGNMDDSVLQCLLSLLSCLNNLFLLLKEL 650
Query: 67 EDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQG- 125
+ ++ L LE++ + D +K R+ LEL Q
Sbjct: 651 RETYNTQQ-----------------------LALEQLYKIKR-DKLKEIERKRLELMQKK 686
Query: 126 -----------QGLDIYWRDNYTCPTEEEYKAMVLQKT 152
QG + W++N EE+ K + +KT
Sbjct: 687 KLEDEAARKAKQGKENLWKENLRKEEEEKQKRLQEEKT 724
>gi|221307575 Rho-type GTPase-activating protein FLJ32810 [Homo
sapiens]
Length = 874
Score = 28.9 bits (63), Expect = 5.8
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 201 NKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYC--VHYLEDVGSFE 258
+K+F ++E K S + S PE ++++ +R++T++ID K++C + +E G
Sbjct: 295 SKTFTMSVSEMKSSGKMNGLVTSSPEMFKLKSCIRRKTDSID-KRFCFDIEVVERHGII- 352
Query: 259 YTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEE 298
T E K + ++A G + L +SK KEE
Sbjct: 353 -TLQAFSEANRKLW--LEAMDGKEPIYTLPAIISK--KEE 387
>gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens]
Length = 200
Score = 28.9 bits (63), Expect = 5.8
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 125 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 182
G L I W +CP++ A L Q GLF L GL+Q +L P L+TL L
Sbjct: 77 GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 134
>gi|27437049 colony stimulating factor 3 isoform b precursor [Homo
sapiens]
Length = 204
Score = 28.9 bits (63), Expect = 5.8
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 125 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 182
G L I W +CP++ A L Q GLF L GL+Q +L P L+TL L
Sbjct: 81 GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 138
>gi|4503079 colony stimulating factor 3 isoform a precursor [Homo
sapiens]
Length = 207
Score = 28.9 bits (63), Expect = 5.8
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 125 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 182
G L I W +CP++ A L Q GLF L GL+Q +L P L+TL L
Sbjct: 84 GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 141
>gi|46877066 plasticity related gene 3 [Homo sapiens]
Length = 325
Score = 28.9 bits (63), Expect = 5.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 54 EMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYV 95
+ ++N ++ D+E K RR FP H+ I S + + Y+
Sbjct: 174 QFINNGNICTGDLEVIEKARRSFPSKHAALSIYSALYATMYI 215
>gi|46877064 plasticity related gene 3 [Homo sapiens]
Length = 325
Score = 28.9 bits (63), Expect = 5.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 54 EMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYV 95
+ ++N ++ D+E K RR FP H+ I S + + Y+
Sbjct: 174 QFINNGNICTGDLEVIEKARRSFPSKHAALSIYSALYATMYI 215
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 28.5 bits (62), Expect = 7.6
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 34/149 (22%)
Query: 162 LMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 221
L + D KE + PL TL F Q +++ N K+ + NK + L + K IH
Sbjct: 762 LYREIKDAKEQVSPLETTLEKFQQEKEELIN---KKNTSNKIAQDKLNDIKEKVKNIHGY 818
Query: 222 --------------WSRPESTQVQNILRQRTE-----------------NIDIKKYCVHY 250
+ + + T++ ++ Q +E +ID +K +
Sbjct: 819 MKDIENYIQDGKDDYKKQKETELNKVIAQLSECEKHKEKINEDMRLMRQDIDTQKIQERW 878
Query: 251 LEDVGSFEYTRNTLKELEAKAYKQIDARG 279
L+D + LKE+E + + + G
Sbjct: 879 LQDNLTLRKRNEELKEVEEERKQHLKEMG 907
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 28.5 bits (62), Expect = 7.6
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 34/149 (22%)
Query: 162 LMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 221
L + D KE + PL TL F Q +++ N K+ + NK + L + K IH
Sbjct: 901 LYREIKDAKEQVSPLETTLEKFQQEKEELIN---KKNTSNKIAQDKLNDIKEKVKNIHGY 957
Query: 222 --------------WSRPESTQVQNILRQRTE-----------------NIDIKKYCVHY 250
+ + + T++ ++ Q +E +ID +K +
Sbjct: 958 MKDIENYIQDGKDDYKKQKETELNKVIAQLSECEKHKEKINEDMRLMRQDIDTQKIQERW 1017
Query: 251 LEDVGSFEYTRNTLKELEAKAYKQIDARG 279
L+D + LKE+E + + + G
Sbjct: 1018 LQDNLTLRKRNEELKEVEEERKQHLKEMG 1046
>gi|38570149 WWC family member 3 [Homo sapiens]
Length = 1092
Score = 28.5 bits (62), Expect = 7.6
Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 164 QLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWS 223
++ +Y + LN +QI+ L +EY + CED + S + ++ +
Sbjct: 23 RMLKEYLIVAQEALNAKKEIYQIKQQRFELAQEEYQQLHKMCEDDSRSYASSFSGYSTNT 82
Query: 224 RPESTQVQNILRQRTENID-IKKYCVHYLEDVGSFEYTRNTLKELEAK------AYKQID 276
+ + Q++ + R + + +K+ +++ E TL+E++ K +YK +
Sbjct: 83 KYDPHQIKAEIASRRDRLSRLKRELTQMKQELQYKEKGVETLQEIDRKMSSTHTSYKLDE 142
Query: 277 ARGGNPELVALVKHLSKMFKEENE 300
A+ EL + K + KE +
Sbjct: 143 AQAIMSELRTIKKAICTGEKERRD 166
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 28.1 bits (61), Expect = 9.9
Identities = 21/106 (19%), Positives = 46/106 (43%)
Query: 184 FQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDI 243
++ R D A++ S + +NK + E K + + +S + + R+ + + D
Sbjct: 1217 YKDRKDRASVDSTQDKKNKQKLPEKAEKKHAAEDKAKSKHKEKSDKEHSKERKSSRSADA 1276
Query: 244 KKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVK 289
+K + LE+ EY ++ ++ + RG P L A ++
Sbjct: 1277 EKSLLEKLEEEALHEYREDSNDKISEVSSDSFTDRGQEPGLTAFLE 1322
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23
[Homo sapiens]
Length = 1636
Score = 28.1 bits (61), Expect = 9.9
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 103 VLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGL 162
++T DH + KLF QL + Q L +Y N ++ L + + +
Sbjct: 590 LVTTDHSEMKKLFEEQLKKYDQ---LKVYLEQNLAA---QDRVLCALTEANVQY---AAV 640
Query: 163 MQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIW 222
++ SD + L TL ++ +D K+ E + F DL E K + A+
Sbjct: 641 RRVLSDLDQKWNSTLQTLVASYEAYEDL----MKKSQEGRDFYADL-ESK-----VAALL 690
Query: 223 SRPEST-QVQNILRQRTENIDIKK 245
R +ST Q + RQ+ + ++KK
Sbjct: 691 ERTQSTCQAREAARQQLLDRELKK 714
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,089,980
Number of Sequences: 37866
Number of extensions: 468665
Number of successful extensions: 1126
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 27
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.