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Search of human proteins with 4758248
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758248 ephrin-B1 precursor [Homo sapiens]
(346 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758248 ephrin-B1 precursor [Homo sapiens] 707 0.0
gi|4758250 ephrin B2 [Homo sapiens] 363 e-100
gi|4503489 ephrin-B3 precursor [Homo sapiens] 238 6e-63
gi|33359680 ephrin A1 isoform b precursor [Homo sapiens] 71 2e-12
gi|33359682 ephrin A1 isoform a precursor [Homo sapiens] 70 3e-12
gi|27894381 ephrin-A2 precursor [Homo sapiens] 63 3e-10
gi|4503487 ephrin-A5 [Homo sapiens] 59 5e-09
gi|33359686 ephrin A4 isoform b [Homo sapiens] 54 3e-07
gi|4885197 ephrin A4 isoform a [Homo sapiens] 53 5e-07
gi|100913200 ephrin A4 isoform c [Homo sapiens] 52 6e-07
gi|4826708 ephrin A3 [Homo sapiens] 52 8e-07
gi|86793109 complement receptor 1 isoform S precursor [Homo sapi... 35 0.099
gi|86793036 complement receptor 1 isoform F precursor [Homo sapi... 35 0.099
gi|125661043 leukocyte immunoglobulin-like receptor, subfamily B... 35 0.099
gi|125661045 leukocyte immunoglobulin-like receptor, subfamily B... 35 0.099
gi|21450717 sushi domain containing 3 [Homo sapiens] 35 0.13
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 33 0.29
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 33 0.38
gi|119943125 G protein-coupled receptor 64 isoform 3 [Homo sapiens] 33 0.49
gi|119943116 G protein-coupled receptor 64 isoform 2 [Homo sapiens] 33 0.49
gi|119943120 G protein-coupled receptor 64 isoform 1 [Homo sapiens] 33 0.49
gi|119943129 G protein-coupled receptor 64 isoform 4 [Homo sapiens] 33 0.49
gi|40548378 syndecan 2 precursor [Homo sapiens] 32 1.1
gi|239743055 PREDICTED: hypothetical protein XP_002342730 [Homo ... 32 1.1
gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo sapi... 32 1.1
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 31 1.4
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 31 1.4
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 31 1.9
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 31 1.9
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 31 1.9
>gi|4758248 ephrin-B1 precursor [Homo sapiens]
Length = 346
Score = 707 bits (1825), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKL 60
MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKL
Sbjct: 1 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKL 60
Query: 61 DIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPN 120
DIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPN
Sbjct: 61 DIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPN 120
Query: 121 YMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSR 180
YMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSR
Sbjct: 121 YMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSR 180
Query: 181 PSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVAL 240
PSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVAL
Sbjct: 181 PSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVAL 240
Query: 241 FAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPS 300
FAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPS
Sbjct: 241 FAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPS 300
Query: 301 DIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 346
DIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
Sbjct: 301 DIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 346
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 363 bits (932), Expect = e-100
Identities = 191/343 (55%), Positives = 238/343 (69%), Gaps = 22/343 (6%)
Query: 8 WLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRA 67
W W V MV LCR A + LEP+ W+S N KFL G+GLV+YP+IGDKLDIICP+
Sbjct: 9 WKYCWGVLMV---LCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKV 65
Query: 68 EAGR--PYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPNYMGLE 125
++ YEYYK+Y+V +QA C+ + L+ C +P+Q+I+FTIKFQEFSPN GLE
Sbjct: 66 DSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLE 125
Query: 126 FKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAV--TPEQLTTSRPSK 183
F+K+ DYYI STSNGSLEGL+N+EGGVC+TR MKI+MKVGQD ++ T + T RP
Sbjct: 126 FQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPTRRPEL 185
Query: 184 EADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVALFAA 243
EA + +T +P + + G S G S G SG+ S+VALFA
Sbjct: 186 EAGTNGRSSTTSPFVKPNPGSSTD-------------GNSAGHSGN--NILGSEVALFAG 230
Query: 244 VGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPSDII 303
+ +GC+IF++III L VLLLK R+RHRKH+ Q LSLSTLA+PK G+EPSDII
Sbjct: 231 IASGCIIFIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSDII 290
Query: 304 IPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 346
IPLRT ++ +CPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
Sbjct: 291 IPLRTADSVFCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 333
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 238 bits (607), Expect = 6e-63
Identities = 136/329 (41%), Positives = 180/329 (54%), Gaps = 30/329 (9%)
Query: 31 NLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEAGRP-----YEYYKLYLVRPEQ 85
+LEPV W+S N +F + G V+YP+IGD+LD++CPRA P YE+YKLYLV Q
Sbjct: 29 SLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQ 88
Query: 86 AAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPNYMGLEFKKHHDYYITSTSNGSLEGL 145
C PN+L+TC+RP+ ++RFTIKFQE+SPN G EF+ HHDYYI +TS+G+ EGL
Sbjct: 89 GRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGL 148
Query: 146 ENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQAPGSRGSLGDS 205
E+ +GGVC TR MK++++VGQ P + S E D + + PG GD
Sbjct: 149 ESLQGGVCLTRGMKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLE-PGKENLPGDP 207
Query: 206 DGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKL 265
+ E P + +G G + + A GA C
Sbjct: 208 TSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMC----------------W 251
Query: 266 RKRHRKHTQQR-----AAALSLSTLASPKGGSGTAGTEPSDIIIPLR---TTENNYCPHY 317
R+R K ++ R + S GG G EP ++ I LR + +CPHY
Sbjct: 252 RRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHY 311
Query: 318 EKVSGDYGHPVYIVQEMPPQSPANIYYKV 346
EKVSGDYGHPVYIVQ+ PPQSP NIYYKV
Sbjct: 312 EKVSGDYGHPVYIVQDGPPQSPPNIYYKV 340
>gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
Length = 183
Score = 70.9 bits (172), Expect = 2e-12
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 11 KWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAE-- 68
++L A ++ C LA A + V W+S NPKF + + I+ ++ D +DIICP E
Sbjct: 2 EFLWAPLLGLCCSLA---AADRHTVFWNSSNPKFRN-EDYTIHVQLNDYVDIICPHYEDH 57
Query: 69 --AGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEI---RFTIKFQEFSPNYMG 123
A E Y LYLV E+ C V CNRP + + + KFQ F+P +G
Sbjct: 58 SVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG 117
Query: 124 LEFKKHHDYYITSTS 138
EFK+ H YY S S
Sbjct: 118 KEFKEGHSYYYISHS 132
>gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
Length = 205
Score = 70.1 bits (170), Expect = 3e-12
Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 11 KWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAE-- 68
++L A ++ C LA A + V W+S NPKF + + I+ ++ D +DIICP E
Sbjct: 2 EFLWAPLLGLCCSLA---AADRHTVFWNSSNPKFRN-EDYTIHVQLNDYVDIICPHYEDH 57
Query: 69 --AGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEI---RFTIKFQEFSPNYMG 123
A E Y LYLV E+ C V CNRP + + + KFQ F+P +G
Sbjct: 58 SVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG 117
Query: 124 LEFKKHHDYYITS 136
EFK+ H YY S
Sbjct: 118 KEFKEGHSYYYIS 130
>gi|27894381 ephrin-A2 precursor [Homo sapiens]
Length = 213
Score = 63.2 bits (152), Expect = 3e-10
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 35 VSWSSLNPKFLSGKG-----LVIYPKIGDKLDIICPRAEAGRP----YEYYKLYLVRPEQ 85
V W+ NP+F +G G + I D LDI CP A P E+Y LY+V E
Sbjct: 39 VYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEG 98
Query: 86 AAACSTVLDPNVLVTCNRPEQE---IRFTIKFQEFSPNYMGLEFKKHHDYYITSTS 138
A+C CNRP ++F+ KFQ F+P +G EF+ H+YY S +
Sbjct: 99 HASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISAT 154
>gi|4503487 ephrin-A5 [Homo sapiens]
Length = 228
Score = 59.3 bits (142), Expect = 5e-09
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 13 LVAMVVWALCRLATPLAKNLEP---VSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEA 69
LV +V+W P +K + V W+S NP+F G I I D LD+ CP E
Sbjct: 9 LVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGD-YHIDVCINDYLDVFCPHYED 67
Query: 70 GRPY---EYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQE---IRFTIKFQEFSPNYMG 123
P E Y LY+V + +AC CNRP ++F+ KFQ F+P +G
Sbjct: 68 SVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLG 127
Query: 124 LEFKKHHDYYITSTS 138
EF+ +Y+ S++
Sbjct: 128 FEFRPGREYFYISSA 142
>gi|33359686 ephrin A4 isoform b [Homo sapiens]
Length = 207
Score = 53.5 bits (127), Expect = 3e-07
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 13 LVAMVVWALCRLATPL---AKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEA 69
L+ V+WA L +PL + V W+S NP+ L G V+ + D LDI+CP E
Sbjct: 6 LLRTVLWAAF-LGSPLRGGSSLRHVVYWNSSNPRLLRGDA-VVELGLNDYLDIVCPHYEG 63
Query: 70 GRPYE---YYKLYLVRPEQAAACSTVLDPNVLV--TCNRPEQEIRFTIKFQEFSPNYMGL 124
P E + LY+V +C P C+ P ++F+ K Q F+P +G
Sbjct: 64 PGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGF 122
Query: 125 EFKKHHDYYITS--TSNGSLEGLENREGGVCRTRTMKII 161
EF YY S T S + L + C+ R +++
Sbjct: 123 EFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVL 161
>gi|4885197 ephrin A4 isoform a [Homo sapiens]
Length = 201
Score = 52.8 bits (125), Expect = 5e-07
Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 13 LVAMVVWALCRLATPL---AKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEA 69
L+ V+WA L +PL + V W+S NP+ L G V+ + D LDI+CP E
Sbjct: 6 LLRTVLWAAF-LGSPLRGGSSLRHVVYWNSSNPRLLRGDA-VVELGLNDYLDIVCPHYEG 63
Query: 70 GRPYE---YYKLYLVRPEQAAACSTVLDPNVLV--TCNRPEQEIRFTIKFQEFSPNYMGL 124
P E + LY+V +C P C+ P ++F+ K Q F+P +G
Sbjct: 64 PGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGF 122
Query: 125 EFKKHHDYYITS--TSNGSLEGLENREGGVCRTRTMKIIMKVG 165
EF YY S T S + L + C+ R + VG
Sbjct: 123 EFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVG 165
>gi|100913200 ephrin A4 isoform c [Homo sapiens]
Length = 193
Score = 52.4 bits (124), Expect = 6e-07
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 13 LVAMVVWALCRLATPL---AKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEA 69
L+ V+WA L +PL + V W+S NP+ L G V+ + D LDI+CP E
Sbjct: 6 LLRTVLWAAF-LGSPLRGGSSLRHVVYWNSSNPRLLRGDA-VVELGLNDYLDIVCPHYEG 63
Query: 70 GRPYE---YYKLYLVRPEQAAACSTVLDPNVLV--TCNRPEQEIRFTIKFQEFSPNYMGL 124
P E + LY+V +C P C+ P ++F+ K Q F+P +G
Sbjct: 64 PGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGF 122
Query: 125 EFKKHHDYYITS--TSNGSLEGLENREGGVCRTRTM 158
EF YY S T S + L + C+ R +
Sbjct: 123 EFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNL 158
>gi|4826708 ephrin A3 [Homo sapiens]
Length = 238
Score = 52.0 bits (123), Expect = 8e-07
Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 37/208 (17%)
Query: 31 NLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEA-----------GRPYEYYKLY 79
N V W+S N + L +G + + D LDI CP + G E Y LY
Sbjct: 31 NRHAVYWNSSN-QHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLY 89
Query: 80 LVRPEQAAACSTVLDPNVLVTCNRPE---QEIRFTIKFQEFSPNYMGLEFKKHHDYYITS 136
+V C+ CNRP I+F+ KFQ +S +G EF H+YY S
Sbjct: 90 MVSRNGYRTCNASQGFKRW-ECNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYIS 148
Query: 137 TSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQAP 196
T +L + MK+ + +TS ++ T+ T P
Sbjct: 149 TPTHNLH---------WKCLRMKVFVCCA-----------STSHSGEKPVPTLPQFTMGP 188
Query: 197 GSR-GSLGDSDGKHETVNQEEKSGPGAS 223
+ L D +G++ V + EKS G S
Sbjct: 189 NVKINVLEDFEGENPQVPKLEKSISGTS 216
>gi|86793109 complement receptor 1 isoform S precursor [Homo sapiens]
Length = 2489
Score = 35.0 bits (79), Expect = 0.099
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 239 ALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGS 292
AL +G + F+L+IIFL+ ++LK RK + H + A+ L + +GGS
Sbjct: 2422 ALIVGTLSGTIFFILLIIFLSWIILKHRKGNNAHENPKEVAIHLHS----QGGS 2471
>gi|86793036 complement receptor 1 isoform F precursor [Homo sapiens]
Length = 2039
Score = 35.0 bits (79), Expect = 0.099
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 239 ALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGS 292
AL +G + F+L+IIFL+ ++LK RK + H + A+ L + +GGS
Sbjct: 1972 ALIVGTLSGTIFFILLIIFLSWIILKHRKGNNAHENPKEVAIHLHS----QGGS 2021
>gi|125661043 leukocyte immunoglobulin-like receptor, subfamily B,
member 3 isoform 1 [Homo sapiens]
Length = 632
Score = 35.0 bits (79), Expect = 0.099
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 221 GASGGSSGDPDGFFNSK-VALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAA 279
G SGGSS P G ++ + + V G + ++++FL + LL R+RH KH R +
Sbjct: 420 GHSGGSSLPPTGPPSTPGLGRYLEVLIGVSVAFVLLLFLLLFLLLRRQRHSKH---RTSD 476
Query: 280 LSLSTLASPKGGSGTAGTEPSD 301
+ P +G A TEP D
Sbjct: 477 QRKTDFQRP---AGAAETEPKD 495
>gi|125661045 leukocyte immunoglobulin-like receptor, subfamily B,
member 3 isoform 2 [Homo sapiens]
Length = 631
Score = 35.0 bits (79), Expect = 0.099
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 221 GASGGSSGDPDGFFNSK-VALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAA 279
G SGGSS P G ++ + + V G + ++++FL + LL R+RH KH R +
Sbjct: 420 GHSGGSSLPPTGPPSTPGLGRYLEVLIGVSVAFVLLLFLLLFLLLRRQRHSKH---RTSD 476
Query: 280 LSLSTLASPKGGSGTAGTEPSD 301
+ P +G A TEP D
Sbjct: 477 QRKTDFQRP---AGAAETEPKD 495
>gi|21450717 sushi domain containing 3 [Homo sapiens]
Length = 255
Score = 34.7 bits (78), Expect = 0.13
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 230 PDGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAAL 280
P F KVA+ A++ + +I L+ + FLT LLK K+ ++ R+A L
Sbjct: 96 PHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCVKKSKRRRSNRSAQL 146
>gi|238624188 diffuse panbronchiolitis critical region 1 protein [Homo
sapiens]
Length = 1393
Score = 33.5 bits (75), Expect = 0.29
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 21/156 (13%)
Query: 135 TSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQ 194
T T ++ EN E T+T+K +KV D + T T+S +K ++ Q
Sbjct: 1219 TETIKAPVKSTENPEKTAAVTKTIKPSVKVTGDKSLTT----TSSHLNK-----TEVTHQ 1269
Query: 195 APGSRGSLGDSDGKHETVNQE------------EKSGPGASGGSSGDPDGFFNSKVALFA 242
P +L S K ++ E + S G G G+ D F + +
Sbjct: 1270 VPTGSFTLITSRTKLSSITSEATGNESHPYLNKDGSQKGIHAGQMGENDSFPAWAIVIVV 1329
Query: 243 AVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAA 278
V ++ L +IFL +++ R+ ++TQ A
Sbjct: 1330 LVAVILLLVFLGLIFLVSYMMRTRRTLTQNTQYNDA 1365
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 33.1 bits (74), Expect = 0.38
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 181 PSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGF 233
PS K + ++GS GD G V E GPG+ GG G P +
Sbjct: 535 PSPGRSRRGKTRHRKASAKGSCGDLPGLRTAVPPHEPGGPGSPGGLGGGPSAW 587
>gi|119943125 G protein-coupled receptor 64 isoform 3 [Homo sapiens]
Length = 995
Score = 32.7 bits (73), Expect = 0.49
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 227 SGDPDGFF---NSKVALFAAVGAGCVIFLL-IIIFLTVL--LLKLRKRHRKHTQQRAAAL 280
+G PD F N+ V VG CVIFLL + +F+ VL L +++K+ + Q++ +
Sbjct: 749 NGSPDDFCWINNNAVFYITVVGYFCVIFLLNVSMFIVVLVQLCRIKKKKQLGAQRKTSIQ 808
Query: 281 SLSTLA 286
L ++A
Sbjct: 809 DLRSIA 814
>gi|119943116 G protein-coupled receptor 64 isoform 2 [Homo sapiens]
Length = 1003
Score = 32.7 bits (73), Expect = 0.49
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 227 SGDPDGFF---NSKVALFAAVGAGCVIFLL-IIIFLTVL--LLKLRKRHRKHTQQRAAAL 280
+G PD F N+ V VG CVIFLL + +F+ VL L +++K+ + Q++ +
Sbjct: 757 NGSPDDFCWINNNAVFYITVVGYFCVIFLLNVSMFIVVLVQLCRIKKKKQLGAQRKTSIQ 816
Query: 281 SLSTLA 286
L ++A
Sbjct: 817 DLRSIA 822
>gi|119943120 G protein-coupled receptor 64 isoform 1 [Homo sapiens]
Length = 1017
Score = 32.7 bits (73), Expect = 0.49
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 227 SGDPDGFF---NSKVALFAAVGAGCVIFLL-IIIFLTVL--LLKLRKRHRKHTQQRAAAL 280
+G PD F N+ V VG CVIFLL + +F+ VL L +++K+ + Q++ +
Sbjct: 771 NGSPDDFCWINNNAVFYITVVGYFCVIFLLNVSMFIVVLVQLCRIKKKKQLGAQRKTSIQ 830
Query: 281 SLSTLA 286
L ++A
Sbjct: 831 DLRSIA 836
>gi|119943129 G protein-coupled receptor 64 isoform 4 [Homo sapiens]
Length = 1014
Score = 32.7 bits (73), Expect = 0.49
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 227 SGDPDGFF---NSKVALFAAVGAGCVIFLL-IIIFLTVL--LLKLRKRHRKHTQQRAAAL 280
+G PD F N+ V VG CVIFLL + +F+ VL L +++K+ + Q++ +
Sbjct: 768 NGSPDDFCWINNNAVFYITVVGYFCVIFLLNVSMFIVVLVQLCRIKKKKQLGAQRKTSIQ 827
Query: 281 SLSTLA 286
L ++A
Sbjct: 828 DLRSIA 833
>gi|40548378 syndecan 2 precursor [Homo sapiens]
Length = 201
Score = 31.6 bits (70), Expect = 1.1
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 165 GQDPNAVTPEQLTTSRP----------SKEADNTVKMATQAPGSRGSLGDSDGKHETVNQ 214
G D + +PE LTTSRP K T+ + + P S ++D + ++
Sbjct: 58 GADEDVESPE-LTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSD 116
Query: 215 EEKSGPGASGGSSGDPDGFFNS---KVALFAAVGAGCVIFLLIIIFLTVLLL-KLRKR 268
E+ A ++ + +S + + AAV AG VI L IFL +LL+ ++RK+
Sbjct: 117 SERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKK 174
>gi|239743055 PREDICTED: hypothetical protein XP_002342730 [Homo
sapiens]
Length = 235
Score = 31.6 bits (70), Expect = 1.1
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 STVLDPNVLVTCNRPEQEIRFTIKFQEFSPNYMGLEF-----KKHHDYYITSTSNGSL-- 142
S L P TC+ P +R + Q L F ++ H+++++S+S S
Sbjct: 40 SITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSACG 99
Query: 143 --EGLENREGGVCRTRT 157
G+ +G +CRTRT
Sbjct: 100 AGPGVGAAKGALCRTRT 116
>gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo
sapiens]
Length = 950
Score = 31.6 bits (70), Expect = 1.1
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 134 ITSTSNGSLEGLENREGGVC----RTRTMKIIMKVGQDPNAVTPEQLTTSRPSKEADNTV 189
+ S++ GS + R VC + +T + G P A + E+ T PS +D+T
Sbjct: 740 VCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCAGSTER--TGEPSASSDSTG 797
Query: 190 KMATQAPGSRGSLGDSDGKHETVNQEE----KSGPG 221
K P R S G H +V+ EE ++GPG
Sbjct: 798 KPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPG 833
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 31.2 bits (69), Expect = 1.4
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 165 GQDPNAVTPEQLTTSRP-----SKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSG 219
GQD + + T RP +KE + + PG GS G+ +G + + + E G
Sbjct: 622 GQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGGGGSKGNKNGDNNSNHNGE--G 679
Query: 220 PGASGGSSGDP 230
G SG S+ P
Sbjct: 680 NGQSGHSAAGP 690
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 168 PNAVTPEQLTTSRPSKEADNTVKMATQAPGSR-GSLGDSDGKHETVNQEEKSGPGASGGS 226
P A T + L+ P ++ G R G G S ++ ++ K PG S G
Sbjct: 967 PGAATHDSLSDYGPQDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKLKMSPGRSRGP 1026
Query: 227 SGDP 230
GDP
Sbjct: 1027 GGDP 1030
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 31.2 bits (69), Expect = 1.4
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 165 GQDPNAVTPEQLTTSRP-----SKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSG 219
GQD + + T RP +KE + + PG GS G+ +G + + + E G
Sbjct: 622 GQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGGGGSKGNKNGDNNSNHNGE--G 679
Query: 220 PGASGGSSGDP 230
G SG S+ P
Sbjct: 680 NGQSGHSAAGP 690
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 168 PNAVTPEQLTTSRPSKEADNTVKMATQAPGSR-GSLGDSDGKHETVNQEEKSGPGASGGS 226
P A T + L+ P ++ G R G G S ++ ++ K PG S G
Sbjct: 967 PGAATHDSLSDYGPQDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKLKMSPGRSRGP 1026
Query: 227 SGDP 230
GDP
Sbjct: 1027 GGDP 1030
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 30.8 bits (68), Expect = 1.9
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 134 ITSTSNGSLEGLENREGGV------CRTRTMKIIMKVGQDPN---AVTPEQLTTSRPSKE 184
+ +T S +G E+R+ + RT K K+G +V+PE+ +T+ K
Sbjct: 1255 VDTTKESSRKGWESRKRKLSGDQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKA 1314
Query: 185 ADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDP 230
+ + +GSLG K E + +K GG +P
Sbjct: 1315 KRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQSNP 1360
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 30.8 bits (68), Expect = 1.9
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 134 ITSTSNGSLEGLENREGGV------CRTRTMKIIMKVGQDPN---AVTPEQLTTSRPSKE 184
+ +T S +G E+R+ + RT K K+G +V+PE+ +T+ K
Sbjct: 1294 VDTTKESSRKGWESRKRKLSGDQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKA 1353
Query: 185 ADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDP 230
+ + +GSLG K E + +K GG +P
Sbjct: 1354 KRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQSNP 1399
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 30.8 bits (68), Expect = 1.9
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 134 ITSTSNGSLEGLENREGGV------CRTRTMKIIMKVGQDPN---AVTPEQLTTSRPSKE 184
+ +T S +G E+R+ + RT K K+G +V+PE+ +T+ K
Sbjct: 1331 VDTTKESSRKGWESRKRKLSGDQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKA 1390
Query: 185 ADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDP 230
+ + +GSLG K E + +K GG +P
Sbjct: 1391 KRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQSNP 1436
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,227,339
Number of Sequences: 37866
Number of extensions: 710498
Number of successful extensions: 2807
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2728
Number of HSP's gapped (non-prelim): 81
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.