Guide to the Human Genome
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Name: NHEDC2 Sequence: fasta or formatted (537aa) NCBI GI: 47271479
Description:

Na+/H+ exchanger domain containing 2

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         39           2
 C cysteine            2.0         11           1
 D aspartate           3.0         16           2
 E glutamate           5.0         27           2
 F phenylalanine       4.7         25           2
 G glycine            10.1         54           3
 H histidine           1.5          8           1
 I isoleucine          7.8         42           3
 K lysine              4.7         25           2
 L leucine            14.5         78           3
 M methionine          2.4         13           1
 N asparagine          2.2         12           1
 P proline             4.5         24           2
 Q glutamine           3.2         17           1
 R arginine            2.8         15           1
 S serine              6.9         37           3
 T threonine           5.6         30           2
 V valine              9.1         49           3
 W tryptophan          1.5          8           1
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Na+/H+ exchanger domain containing 2 
NHEDC1                0.523   Na+/H+ exchanger domain containing 1 isoform 1 [Homo...
NHEDC1                0.469   Na+/H+ exchanger domain containing 1 isoform 2 [Hom...
LOC100134103          0.280   PREDICTED: similar to Na+/H+ exchanger domain conta...
LOC653097             0.043   PREDICTED: similar to hCG1988827 
LOC653097             0.043   PREDICTED: similar to hCG1988827 
SLC2A10               0.009   solute carrier family 2 member 10 
TAS2R4                0.007   taste receptor T2R4 
CLTC                  0.006   clathrin heavy chain 1 
C6orf174              0.005   hypothetical protein LOC387104 
SLC26A6               0.005   solute carrier family 26, member 6 isoform 4 
SLC26A6               0.005   solute carrier family 26, member 6 isoform 3 
SLC26A6               0.005   solute carrier family 26, member 6 isoform 2 
SLC26A6               0.005   solute carrier family 26, member 6 isoform 1 
PTPRZ1                0.004   protein tyrosine phosphatase, receptor-type, zeta1 p...
RDH5                  0.004   retinol dehydrogenase 5 (11-cis and 9-cis) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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